-
1
-
-
79958022433
-
Genetic control of biosynthesis and transport of riboflavin and flavin nucleotides and construction of robust biotechnological producers
-
Abbas CA, Sibirny AA. 2011. Genetic control of biosynthesis and transport of riboflavin and flavin nucleotides and construction of robust biotechnological producers. Microbiol. Mol. Biol. Rev. 75:321-360.
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 321-360
-
-
Abbas, C.A.1
Sibirny, A.A.2
-
2
-
-
0034668291
-
Structural and functional analysis of the riboflavin synthesis genes encoding GTP cyclohydrolase II (ribA), DHBP synthase (ribBA), riboflavin synthase (ribC), and riboflavin deaminase/reductase (ribD) from Helicobacter pylori strain P1
-
Fassbinder F, Kist M, Bereswill S. 2000. Structural and functional analysis of the riboflavin synthesis genes encoding GTP cyclohydrolase II (ribA), DHBP synthase (ribBA), riboflavin synthase (ribC), and riboflavin deaminase/reductase (ribD) from Helicobacter pylori strain P1. FEMS Microbiol. Lett. 191:191-197.
-
(2000)
FEMS Microbiol. Lett.
, vol.191
, pp. 191-197
-
-
Fassbinder, F.1
Kist, M.2
Bereswill, S.3
-
3
-
-
37349057886
-
Riboflavin biosynthesis is associated with assimilatory ferric reduction and iron acquisition by Campylobacter jejuni
-
Crossley RA, Gaskin DJ, Holmes K, Mulholland F, Wells JM, Kelly DJ, van Vliet AH, Walton NJ. 2007. Riboflavin biosynthesis is associated with assimilatory ferric reduction and iron acquisition by Campylobacter jejuni. Appl. Environ. Microbiol. 73:7819-7825.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 7819-7825
-
-
Crossley, R.A.1
Gaskin, D.J.2
Holmes, K.3
Mulholland, F.4
Wells, J.M.5
Kelly, D.J.6
van Vliet, A.H.7
Walton, N.J.8
-
5
-
-
73649141295
-
The Mtr respiratory pathway is essential for reducing flavins and electrodes in Shewanella oneidensis
-
Coursolle D, Baron DB, Bond DR, Gralnick JA. 2010. The Mtr respiratory pathway is essential for reducing flavins and electrodes in Shewanella oneidensis. J. Bacteriol. 192:467-474.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 467-474
-
-
Coursolle, D.1
Baron, D.B.2
Bond, D.R.3
Gralnick, J.A.4
-
6
-
-
38949214833
-
Secretion of flavins by Shewanella species and their role in extracellular electron transfer
-
von Canstein H, Ogawa J, Shimizu S, Lloyd JR. 2008. Secretion of flavins by Shewanella species and their role in extracellular electron transfer. Appl. Environ. Microbiol. 74:615-623.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 615-623
-
-
von Canstein, H.1
Ogawa, J.2
Shimizu, S.3
Lloyd, J.R.4
-
7
-
-
41649085415
-
Shewanella secretes flavins that mediate extracellular electron transfer
-
Marsili E, Baron DB, Shikhare ID, Coursolle D, Gralnick JA, Bond DR. 2008. Shewanella secretes flavins that mediate extracellular electron transfer. Proc. Natl. Acad. Sci. U.S.A. 105:3968-3973.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 3968-3973
-
-
Marsili, E.1
Baron, D.B.2
Shikhare, I.D.3
Coursolle, D.4
Gralnick, J.A.5
Bond, D.R.6
-
8
-
-
84868307698
-
Geothrix fermentans secretes two different redox-active compounds to utilize electron acceptors across a wide range of redox potentials
-
Mehta-Kolte MG, Bond DR. 2012. Geothrix fermentans secretes two different redox-active compounds to utilize electron acceptors across a wide range of redox potentials. Appl. Environ. Microbiol. 78:6987-6995.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 6987-6995
-
-
Mehta-Kolte, M.G.1
Bond, D.R.2
-
9
-
-
0033607264
-
Identification of lumichrome as a sinorhizobium enhancer of alfalfa root respiration and shoot growth
-
Phillips DA, Joseph CM, Yang GP, Martinez-Romero E, Sanborn JR, Volpin H. 1999. Identification of lumichrome as a sinorhizobium enhancer of alfalfa root respiration and shoot growth. Proc. Natl. Acad. Sci. U.S.A. 96:12275-12280.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 12275-12280
-
-
Phillips, D.A.1
Joseph, C.M.2
Yang, G.P.3
Martinez-Romero, E.4
Sanborn, J.R.5
Volpin, H.6
-
10
-
-
0035991169
-
Roles for riboflavin in the Sinorhizobium-alfalfa association
-
Yang G, Bhuvaneswari TV, Joseph CM, King MD, Phillips DA. 2002. Roles for riboflavin in the Sinorhizobium-alfalfa association. Mol. Plant- Microbe Interact. 15:456-462.
-
(2002)
Mol. Plant- Microbe Interact.
, vol.15
, pp. 456-462
-
-
Yang, G.1
Bhuvaneswari, T.V.2
Joseph, C.M.3
King, M.D.4
Phillips, D.A.5
-
11
-
-
51949112781
-
The vitamin riboflavin and its derivative lumichrome activate the LasR bacterial quorum-sensing receptor
-
Rajamani S, Bauer WD, Robinson JB, Farrow JM, 3rd, Pesci EC, Teplitski M, Gao M, Sayre RT, Phillips DA. 2008. The vitamin riboflavin and its derivative lumichrome activate the LasR bacterial quorum-sensing receptor. Mol. Plant-Microbe Interact. 21:1184-1192.
-
(2008)
Mol. Plant-Microbe Interact.
, vol.21
, pp. 1184-1192
-
-
Rajamani, S.1
Bauer, W.D.2
Robinson, J.B.3
Farrow I.I.I, J.M.4
Pesci, E.C.5
Teplitski, M.6
Gao, M.7
Sayre, R.T.8
Phillips, D.A.9
-
12
-
-
0033040385
-
GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone 4-phosphate synthase are rate-limiting enzymes in riboflavin synthesis of an industrial Bacillus subtilis strain used for riboflavin production
-
Hümbelin M, Griesser V, Keller T, Schurter W, Haiker M, Hohmann HP, Ritz H, Richter G, Bacher A, van Loon APGM. 1999. GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone 4-phosphate synthase are rate-limiting enzymes in riboflavin synthesis of an industrial Bacillus subtilis strain used for riboflavin production. J. Ind. Microbiol. Biotechnol. 22:1-7.
-
(1999)
J. Ind. Microbiol. Biotechnol.
, vol.22
, pp. 1-7
-
-
Hümbelin, M.1
Griesser, V.2
Keller, T.3
Schurter, W.4
Haiker, M.5
Hohmann, H.P.6
Ritz, H.7
Richter, G.8
Bacher, A.9
van Loon, A.P.G.M.10
-
14
-
-
44349179377
-
Ecophysiology of the genus Shewanella
-
Springer, New York, NY.
-
Nealson KH, Scott J. 2006. Ecophysiology of the genus Shewanella, p 1133-1151. In Prokaryotes, vol 6. Springer, New York, NY.
-
(2006)
Prokaryotes
, vol.6
, pp. 1133-1151
-
-
Nealson, K.H.1
Scott, J.2
-
15
-
-
34848889237
-
Ecology and biotechnology of the genus Shewanella
-
Hau HH, Gralnick JA. 2007. Ecology and biotechnology of the genus Shewanella. Annu. Rev. Microbiol. 61:237-258.
-
(2007)
Annu. Rev. Microbiol.
, vol.61
, pp. 237-258
-
-
Hau, H.H.1
Gralnick, J.A.2
-
16
-
-
0020820909
-
3 linkage groups of the genes of riboflavin biosynthesis in Escherichia coli
-
Bandrin SV, Rabinovich PM, Stepanov AI. 1983. 3 linkage groups of the genes of riboflavin biosynthesis in Escherichia coli. Genetika 19:1419-1425.
-
(1983)
Genetika
, vol.19
, pp. 1419-1425
-
-
Bandrin, S.V.1
Rabinovich, P.M.2
Stepanov, A.I.3
-
17
-
-
0017030513
-
New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressurized atmosphere
-
Balch WE, Wolfe RS. 1976. New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressurized atmosphere. Appl. Environ. Microbiol. 32:781-791.
-
(1976)
Appl. Environ. Microbiol.
, vol.32
, pp. 781-791
-
-
Balch, W.E.1
Wolfe, R.S.2
-
18
-
-
78649371078
-
An essential role for UshA in processing of extracellular flavin electron shuttles by Shewanella oneidensis
-
Covington ED, Gelbmann CB, Kotloski NJ, Gralnick JA. 2010. An essential role for UshA in processing of extracellular flavin electron shuttles by Shewanella oneidensis. Mol. Microbiol. 78:519-532.
-
(2010)
Mol. Microbiol.
, vol.78
, pp. 519-532
-
-
Covington, E.D.1
Gelbmann, C.B.2
Kotloski, N.J.3
Gralnick, J.A.4
-
19
-
-
0024558335
-
One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution
-
Chung CT, Niemela SL, Miller RH. 1989. One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc. Natl. Acad. Sci. U.S.A. 86:2172-2175.
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 2172-2175
-
-
Chung, C.T.1
Niemela, S.L.2
Miller, R.H.3
-
21
-
-
48449090786
-
NCBI BLAST: a better web interface
-
Johnson M, Zaretskaya I, Raytselis Y, Merezhuk Y, McGinnis S, Madden TL. 2008. NCBI BLAST: a better web interface. Nucleic Acids Res. 36:W5-W9.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Johnson, M.1
Zaretskaya, I.2
Raytselis, Y.3
Merezhuk, Y.4
McGinnis, S.5
Madden, T.L.6
-
22
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
23
-
-
74549125386
-
SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M, Guindon S, Gascuel O. 2010. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 27:221-224.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
24
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
25
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones DT, Taylor WR, Thornton JM. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
26
-
-
0037100667
-
Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation
-
Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS. 2002. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Res. 30:3141-3151.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3141-3151
-
-
Vitreschak, A.G.1
Rodionov, D.A.2
Mironov, A.A.3
Gelfand, M.S.4
-
27
-
-
84867449264
-
Anomalies of the anaerobic tricarboxylic acid cycle in Shewanella oneidensis revealed by Tn-seq
-
Brutinel ED, Gralnick JA. 2012. Anomalies of the anaerobic tricarboxylic acid cycle in Shewanella oneidensis revealed by Tn-seq. Mol. Microbiol. 86:273-283.
-
(2012)
Mol. Microbiol.
, vol.86
, pp. 273-283
-
-
Brutinel, E.D.1
Gralnick, J.A.2
-
28
-
-
27744517816
-
GTP cyclohydrolase II structure and mechanism
-
Ren J, Kotaka M, Lockyer M, Lamb HK, Hawkins AR, Stammers DK. 2005. GTP cyclohydrolase II structure and mechanism. J. Biol. Chem. 280:36912-36919.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 36912-36919
-
-
Ren, J.1
Kotaka, M.2
Lockyer, M.3
Lamb, H.K.4
Hawkins, A.R.5
Stammers, D.K.6
-
29
-
-
0035155856
-
Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase of riboflavin biosynthesis
-
Liao DI, Calabrese JC, Wawrzak Z, Viitanen PV, Jordan DB. 2001. Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase of riboflavin biosynthesis. Structure 9:11-18.
-
(2001)
Structure
, vol.9
, pp. 11-18
-
-
Liao, D.I.1
Calabrese, J.C.2
Wawrzak, Z.3
Viitanen, P.V.4
Jordan, D.B.5
-
30
-
-
0035818528
-
The NMR structure of the 47-kDa dimeric enzyme 3,4-dihydroxy-2- butanone-4-phosphate synthase and ligand binding studies reveal the location of the active site
-
Kelly MJ, Ball LJ, Krieger C, Yu Y, Fischer M, Schiffmann S, Schmieder P, Kuhne R, Bermel W, Bacher A, Richter G, Oschkinat H. 2001. The NMR structure of the 47-kDa dimeric enzyme 3,4-dihydroxy-2- butanone-4-phosphate synthase and ligand binding studies reveal the location of the active site. Proc. Natl. Acad. Sci. U.S.A. 98:13025-13030.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 13025-13030
-
-
Kelly, M.J.1
Ball, L.J.2
Krieger, C.3
Yu, Y.4
Fischer, M.5
Schiffmann, S.6
Schmieder, P.7
Kuhne, R.8
Bermel, W.9
Bacher, A.10
Richter, G.11
Oschkinat, H.12
-
31
-
-
63849246525
-
Protein structure prediction on the Web: a case study using the Phyre server
-
Kelley LA, Sternberg MJ. 2009. Protein structure prediction on the Web: a case study using the Phyre server. Nat. Protoc. 4:363-371.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
32
-
-
0035941188
-
Biosynthesis of riboflavin. Single turnover kinetic analysis of GTP cyclohydrolase II
-
Schramek N, Bracher A, Bacher A. 2001. Biosynthesis of riboflavin. Single turnover kinetic analysis of GTP cyclohydrolase II. J. Biol. Chem. 276:44157-44162.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 44157-44162
-
-
Schramek, N.1
Bracher, A.2
Bacher, A.3
-
33
-
-
0026642218
-
Biosynthesis of riboflavin: cloning, sequencing, and expression of the gene coding for 3,4-dihydroxy-2-butanone 4-phosphate synthase of Escherichia coli
-
Richter G, Volk R, Krieger C, Lahm HW, Rothlisberger U, Bacher A. 1992. Biosynthesis of riboflavin: cloning, sequencing, and expression of the gene coding for 3,4-dihydroxy-2-butanone 4-phosphate synthase of Escherichia coli. J. Bacteriol. 174:4050-4056.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 4050-4056
-
-
Richter, G.1
Volk, R.2
Krieger, C.3
Lahm, H.W.4
Rothlisberger, U.5
Bacher, A.6
|