-
1
-
-
0033966457
-
The terminase enzyme from bacteriophage lambda: A DNA-packaging machine
-
Catalano, C.E. (2000) The terminase enzyme from bacteriophage lambda: a DNA-packaging machine. Cell. Mol. Life Sci., 57, 128-148.
-
(2000)
Cell. Mol. Life Sci.
, vol.57
, pp. 128-148
-
-
Catalano, C.E.1
-
2
-
-
0037022213
-
DNA packaging: A new class of molecular motors
-
Moore, S.D. and Prevelige, P.E. Jr (2002) DNA packaging: a new class of molecular motors. Curr. Biol., 12, R96-R98.
-
(2002)
Curr. Biol.
, vol.12
-
-
Moore, S.D.1
Prevelige Jr., P.E.2
-
3
-
-
0034619668
-
Structure of the bacteriophage phi29 DNA packaging motor
-
Simpson, A.A., Tao, Y., Leiman, P.G., Badasso, M.O., He, Y., Jardine, P.J., Olson, N.H., Morais, M.C., Grimes, S., Anderson, D.L. et al. (2000) Structure of the bacteriophage phi29 DNA packaging motor. Nature, 408, 745-750.
-
(2000)
Nature
, vol.408
, pp. 745-750
-
-
Simpson, A.A.1
Tao, Y.2
Leiman, P.G.3
Badasso, M.O.4
He, Y.5
Jardine, P.J.6
Olson, N.H.7
Morais, M.C.8
Grimes, S.9
Anderson, D.L.10
-
4
-
-
84858273215
-
The bacteriophage DNA packaging machine
-
Feiss, M. and Rao, V.B. (2012) The bacteriophage DNA packaging machine. Adv. Exp. Med. Biol., 726, 489-509.
-
(2012)
Adv. Exp. Med. Biol.
, vol.726
, pp. 489-509
-
-
Feiss, M.1
Rao, V.B.2
-
5
-
-
0035909370
-
The bacteriophage straight phi29 portal motor can package DNA against a large internal force
-
Smith, D.E., Tans, S.J., Smith, S.B., Grimes, S., Anderson, D.L. and Bustamante, C. (2001) The bacteriophage straight phi29 portal motor can package DNA against a large internal force. Nature, 413, 748-752.
-
(2001)
Nature
, vol.413
, pp. 748-752
-
-
Smith, D.E.1
Tans, S.J.2
Smith, S.B.3
Grimes, S.4
Anderson, D.L.5
Bustamante, C.6
-
6
-
-
84861303555
-
Family cystoviridae
-
King, A.M.Q., Carstens, E., Adams, M. and Lefkowitz, E.J. (eds), Elsevier, London, UK
-
Poranen, M.M. and Bamford, D.H. (2012) Family Cystoviridae. In: King, A.M.Q., Carstens, E., Adams, M. and Lefkowitz, E.J. (eds), Virus Taxonomy, Ninth Report of the International Committee on Taxonomy of Viruses. Elsevier, London, UK, pp. 515-518.
-
(2012)
Virus Taxonomy, Ninth Report of the International Committee on Taxonomy of Viruses.
, pp. 515-518
-
-
Poranen, M.M.1
Bamford, D.H.2
-
7
-
-
0032486109
-
Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage phi 6
-
Juuti, J.T., Bamford, D.H., Tuma, R. and Thomas, G.J. Jr (1998) Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage phi 6. J. Mol. Biol., 279, 347-359.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 347-359
-
-
Juuti, J.T.1
Bamford, D.H.2
Tuma, R.3
Thomas Jr., G.J.4
-
8
-
-
0348111460
-
RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein
-
Kainov, D.E., Pirttimaa, M., Tuma, R., Butcher, S.J., Thomas, G.J. Jr, Bamford, D.H. and Makeyev, E.V. (2003) RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein. J. Biol. Chem., 278, 48084-48091.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 48084-48091
-
-
Kainov, D.E.1
Pirttimaa, M.2
Tuma, R.3
Butcher, S.J.4
Thomas Jr., G.J.5
Bamford, D.H.6
Makeyev, E.V.7
-
9
-
-
84863012080
-
Ionic strength-dependent persistence lengths of single-stranded RNA and DNA
-
Chen, H., Meisburger, S.P., Pabit, S.A., Sutton, J.L., Webb, W.W. and Pollack, L. (2012) Ionic strength-dependent persistence lengths of single-stranded RNA and DNA. Proc. Natl Acad. Sci. USA, 109, 799-804.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 799-804
-
-
Chen, H.1
Meisburger, S.P.2
Pabit, S.A.3
Sutton, J.L.4
Webb, W.W.5
Pollack, L.6
-
10
-
-
33846785442
-
Electron cryomicroscopy comparison of the architectures of the enveloped bacteriophages phi6 and phi8
-
Jaalinoja, H.T., Huiskonen, J.T. and Butcher, S.J. (2007) Electron cryomicroscopy comparison of the architectures of the enveloped bacteriophages phi6 and phi8. Structure, 15, 157-167.
-
(2007)
Structure
, vol.15
, pp. 157-167
-
-
Jaalinoja, H.T.1
Huiskonen, J.T.2
Butcher, S.J.3
-
11
-
-
0034041604
-
RNA secondary structures of the bacteriophage phi6 packaging regions
-
Pirttimaa, M.J. and Bamford, D.H. (2000) RNA secondary structures of the bacteriophage phi6 packaging regions. RNA, 6, 880-889.
-
(2000)
RNA
, vol.6
, pp. 880-889
-
-
Pirttimaa, M.J.1
Bamford, D.H.2
-
12
-
-
0017225416
-
Studies of virus structure by laser-Raman spectroscopy. II. MS2 phage. MS2 capsids and MS2 RNA in aqueous solutions
-
Thomas, G.J. Jr, Prescott, B., McDonald-Ordzie, P.E. and Hartman, K.A. (1976) Studies of virus structure by laser-Raman spectroscopy. II. MS2 phage, MS2 capsids and MS2 RNA in aqueous solutions. J. Mol. Biol., 102, 103-124.
-
(1976)
J. Mol. Biol.
, vol.102
, pp. 103-124
-
-
Thomas Jr., G.J.1
Prescott, B.2
McDonald-Ordzie, P.E.3
Hartman, K.A.4
-
13
-
-
0033007294
-
Precise packaging of the three genomic segments of the double-stranded-RNA bacteriophage phi6
-
Mindich, L. (1999) Precise packaging of the three genomic segments of the double-stranded-RNA bacteriophage phi6. Microbiol. Mol. Biol. Rev., 63, 149-160.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 149-160
-
-
Mindich, L.1
-
14
-
-
0036598511
-
Evolution of viral structure
-
Bamford, D.H., Burnett, R.M. and Stuart, D.I. (2002) Evolution of viral structure. Theor. Popul. Biol., 61, 461-470.
-
(2002)
Theor. Popul. Biol.
, vol.61
, pp. 461-470
-
-
Bamford, D.H.1
Burnett, R.M.2
Stuart, D.I.3
-
15
-
-
0030872369
-
Intermediates in the assembly pathway of the double-stranded RNA virus phi6
-
Butcher, S.J., Dokland, T., Ojala, P.M., Bamford, D.H. and Fuller, S.D. (1997) Intermediates in the assembly pathway of the double-stranded RNA virus phi6. EMBO J., 16, 4477-4487.
-
(1997)
EMBO J.
, vol.16
, pp. 4477-4487
-
-
Butcher, S.J.1
Dokland, T.2
Ojala, P.M.3
Bamford, D.H.4
Fuller, S.D.5
-
16
-
-
0033607480
-
A symmetry mismatch at the site of RNA packaging in the polymerase complex of dsRNA bacteriophage phi6
-
de Haas, F., Paatero, A.O., Mindich, L., Bamford, D.H. and Fuller, S.D. (1999) A symmetry mismatch at the site of RNA packaging in the polymerase complex of dsRNA bacteriophage phi6. J. Mol. Biol., 294, 357-372.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 357-372
-
-
De Haas, F.1
Paatero, A.O.2
Mindich, L.3
Bamford, D.H.4
Fuller, S.D.5
-
17
-
-
0019300794
-
Assignment of viral proteins to the three double-stranded RNA segments of bacteriophage phi 6 genome: Translation of phi 6 messenger RNAs transcribed in vitro
-
Emori, Y., Iba, H. and Okada, Y. (1980) Assignment of viral proteins to the three double-stranded RNA segments of bacteriophage phi 6 genome: translation of phi 6 messenger RNAs transcribed in vitro. Mol. Gen. Genet., 180, 385-389.
-
(1980)
Mol. Gen. Genet.
, vol.180
, pp. 385-389
-
-
Emori, Y.1
Iba, H.2
Okada, Y.3
-
18
-
-
0020066788
-
Morphogenetic pathway of bacteriophage phi 6. A flow analysis of subviral and viral particles in infected cells
-
Emori, Y., Iba, H. and Okada, Y. (1982) Morphogenetic pathway of bacteriophage phi 6. A flow analysis of subviral and viral particles in infected cells. J. Mol. Biol., 154, 287-310.
-
(1982)
J. Mol. Biol.
, vol.154
, pp. 287-310
-
-
Emori, Y.1
Iba, H.2
Okada, Y.3
-
19
-
-
0028928032
-
In vitro packaging of the single-stranded RNA genomic precursors of the segmented double-stranded RNA bacteriophage phi. 6: The three segments modulate each other's packaging efficiency
-
Frilander, M. and Bamford, D.H. (1995) In vitro packaging of the single-stranded RNA genomic precursors of the segmented double-stranded RNA bacteriophage phi 6: the three segments modulate each other's packaging efficiency. J. Mol. Biol., 246, 418-428.
-
(1995)
J. Mol. Biol.
, vol.246
, pp. 418-428
-
-
Frilander, M.1
Bamford, D.H.2
-
20
-
-
0026560654
-
In vitro packaging and replication of individual genomic segments of bacteriophage phi 6 RNA
-
Gottlieb, P., Strassman, J., Qiao, X., Frilander, M., Frucht, A. and Mindich, L. (1992) In vitro packaging and replication of individual genomic segments of bacteriophage phi 6 RNA. J. Virol., 66, 2611-2616.
-
(1992)
J. Virol.
, vol.66
, pp. 2611-2616
-
-
Gottlieb, P.1
Strassman, J.2
Qiao, X.3
Frilander, M.4
Frucht, A.5
Mindich, L.6
-
21
-
-
0036786440
-
Nonspecific nucleoside triphosphatase P4 of doublestranded RNA bacteriophage phi6 is required for single-stranded RNA packaging and transcription
-
Pirttimaa, M.J., Paatero, A.O., Frilander, M.J. and Bamford, D.H. (2002) Nonspecific nucleoside triphosphatase P4 of doublestranded RNA bacteriophage phi6 is required for single-stranded RNA packaging and transcription. J. Virol., 76, 10122-10127.
-
(2002)
J. Virol.
, vol.76
, pp. 10122-10127
-
-
Pirttimaa, M.J.1
Paatero, A.O.2
Frilander, M.J.3
Bamford, D.H.4
-
22
-
-
0028916125
-
In vitro packaging of individual genomic segments of bacteriophage phi 6 RNA: Serial dependence relationships
-
Qiao, X., Casini, G., Qiao, J. and Mindich, L. (1995) In vitro packaging of individual genomic segments of bacteriophage phi 6 RNA: serial dependence relationships. J. Virol., 69, 2926-2931.
-
(1995)
J. Virol.
, vol.69
, pp. 2926-2931
-
-
Qiao, X.1
Casini, G.2
Qiao, J.3
Mindich, L.4
-
23
-
-
0015910976
-
Characterization of segmented double-helical RNA from bacteriophage phi6
-
Semancik, J.S., Vidaver, A.K. and Van Etten, J.L. (1973) Characterization of segmented double-helical RNA from bacteriophage phi6. J. Mol. Biol., 78, 617-625.
-
(1973)
J. Mol. Biol.
, vol.78
, pp. 617-625
-
-
Semancik, J.S.1
Vidaver, A.K.2
Van Etten, J.L.3
-
24
-
-
84869124928
-
Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage Phi6
-
Sun, X., Bamford, D.H. and Poranen, M.M. (2012) Probing, by self-assembly, the number of potential binding sites for minor protein subunits in the procapsid of double-stranded RNA bacteriophage Phi6. J. Virol., 86, 12208-12216.
-
(2012)
J. Virol.
, vol.86
, pp. 12208-12216
-
-
Sun, X.1
Bamford, D.H.2
Poranen, M.M.3
-
25
-
-
0035002345
-
Self-assembly of a viral molecular machine from purified protein and RNA constituents
-
Poranen, M.M., Paatero, A.O., Tuma, R. and Bamford, D.H. (2001) Self-assembly of a viral molecular machine from purified protein and RNA constituents. Mol. Cell, 7, 845-854.
-
(2001)
Mol. Cell
, vol.7
, pp. 845-854
-
-
Poranen, M.M.1
Paatero, A.O.2
Tuma, R.3
Bamford, D.H.4
-
26
-
-
3142702664
-
Packaging motor from double-stranded RNA bacteriophage phi12 acts as an obligatory passive conduit during transcription
-
Kainov, D.E., Lisal, J., Bamford, D.H. and Tuma, R. (2004) Packaging motor from double-stranded RNA bacteriophage phi12 acts as an obligatory passive conduit during transcription. Nucleic Acids Res., 32, 3515-3521.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3515-3521
-
-
Kainov, D.E.1
Lisal, J.2
Bamford, D.H.3
Tuma, R.4
-
27
-
-
34248171243
-
Structure of a hexameric RNA packaging motor in a viral polymerase complex
-
Huiskonen, J.T., Jaalinoja, H.T., Briggs, J.A., Fuller, S.D. and Butcher, S.J. (2007) Structure of a hexameric RNA packaging motor in a viral polymerase complex. J. Struct. Biol., 158, 156-164.
-
(2007)
J. Struct. Biol.
, vol.158
, pp. 156-164
-
-
Huiskonen, J.T.1
Jaalinoja, H.T.2
Briggs, J.A.3
Fuller, S.D.4
Butcher, S.J.5
-
28
-
-
17944371487
-
In vivo studies of genomic packaging in the dsRNA bacteriophage Phi8
-
Qiao, J., Qiao, X. and Mindich, L. (2005) In vivo studies of genomic packaging in the dsRNA bacteriophage Phi8. BMC Microbiol., 5, 10.
-
(2005)
BMC Microbiol.
, vol.5
, pp. 10
-
-
Qiao, J.1
Qiao, X.2
Mindich, L.3
-
29
-
-
0142245619
-
Analysis of specific binding involved in genomic packaging of the double-stranded- RNA bacteriophage phi6
-
Qiao, X., Qiao, J. and Mindich, L. (2003) Analysis of specific binding involved in genomic packaging of the double-stranded- RNA bacteriophage phi6. J. Bacteriol., 185, 6409-6414.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6409-6414
-
-
Qiao, X.1
Qiao, J.2
Mindich, L.3
-
30
-
-
33745293696
-
Hexameric molecular motors: P4 packaging ATPase unravels the mechanism
-
Kainov, D.E., Tuma, R. and Mancini, E.J. (2006) Hexameric molecular motors: P4 packaging ATPase unravels the mechanism. Cell. Mol. Life Sci., 63, 1095-1105.
-
(2006)
Cell. Mol. Life Sci.
, vol.63
, pp. 1095-1105
-
-
Kainov, D.E.1
Tuma, R.2
Mancini, E.J.3
-
31
-
-
4544386863
-
Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation
-
Mancini, E.J., Kainov, D.E., Grimes, J.M., Tuma, R., Bamford, D.H. and Stuart, D.I. (2004) Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation. Cell, 118, 743-755.
-
(2004)
Cell
, vol.118
, pp. 743-755
-
-
Mancini, E.J.1
Kainov, D.E.2
Grimes, J.M.3
Tuma, R.4
Bamford, D.H.5
Stuart, D.I.6
-
32
-
-
4344567409
-
Production, crystallization and preliminary X-ray crystallographic studies of the bacteriophage phi 12 packaging motor
-
Mancini, E.J., Kainov, D.E., Wei, H., Gottlieb, P., Tuma, R., Bamford, D.H., Stuart, D.I. and Grimes, J.M. (2004) Production, crystallization and preliminary X-ray crystallographic studies of the bacteriophage phi 12 packaging motor. Acta Crystallogr. D Biol. Crystallogr., 60, 588-590.
-
(2004)
Acta Crystallogr. D Biol. Crystallogr.
, vol.60
, pp. 588-590
-
-
Mancini, E.J.1
Kainov, D.E.2
Wei, H.3
Gottlieb, P.4
Tuma, R.5
Bamford, D.H.6
Stuart, D.I.7
Grimes, J.M.8
-
33
-
-
0033428970
-
Helicase motifs: The engine that powers DNA unwinding
-
Hall, M.C. and Matson, S.W. (1999) Helicase motifs: the engine that powers DNA unwinding. Mol. Microbiol., 34, 867-877.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 867-877
-
-
Hall, M.C.1
Matson, S.W.2
-
34
-
-
0026704305
-
Organization and evolution of bacterial and bacteriophage primase-helicase systems
-
Ilyina, T.V., Gorbalenya, A.E. and Koonin, E.V. (1992) Organization and evolution of bacterial and bacteriophage primase-helicase systems. J. Mol. Evol., 34, 351-357.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 351-357
-
-
Ilyina, T.V.1
Gorbalenya, A.E.2
Koonin, E.V.3
-
35
-
-
41249097479
-
Structural basis of mechanochemical coupling in a hexameric molecular motor
-
Kainov, D.E., Mancini, E.J., Telenius, J., Lisal, J., Grimes, J.M., Bamford, D.H., Stuart, D.I. and Tuma, R. (2008) Structural basis of mechanochemical coupling in a hexameric molecular motor. J. Biol. Chem., 283, 3607-3617.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 3607-3617
-
-
Kainov, D.E.1
Mancini, E.J.2
Telenius, J.3
Lisal, J.4
Grimes, J.M.5
Bamford, D.H.6
Stuart, D.I.7
Tuma, R.8
-
36
-
-
20744434561
-
Cooperative mechanism of RNA packaging motor
-
Lisal, J. and Tuma, R. (2005) Cooperative mechanism of RNA packaging motor. J. Biol. Chem., 280, 23157-23164.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 23157-23164
-
-
Lisal, J.1
Tuma, R.2
-
37
-
-
33744808616
-
Interaction of packaging motor with the polymerase complex of dsRNA bacteriophage
-
Lisal, J., Kainov, D.E., Lam, T.T., Emmett, M.R., Wei, H., Gottlieb, P., Marshall, A.G. and Tuma, R. (2006) Interaction of packaging motor with the polymerase complex of dsRNA bacteriophage. Virology, 351, 73-79.
-
(2006)
Virology
, vol.351
, pp. 73-79
-
-
Lisal, J.1
Kainov, D.E.2
Lam, T.T.3
Emmett, M.R.4
Wei, H.5
Gottlieb, P.6
Marshall, A.G.7
Tuma, R.8
-
38
-
-
20444463552
-
Functional visualization of viral molecular motor by hydrogen-deuterium exchange reveals transient states
-
Lisal, J., Lam, T.T., Kainov, D.E., Emmett, M.R., Marshall, A.G. and Tuma, R. (2005) Functional visualization of viral molecular motor by hydrogen-deuterium exchange reveals transient states. Nat. Struct. Mol. Biol., 12, 460-466.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 460-466
-
-
Lisal, J.1
Lam, T.T.2
Kainov, D.E.3
Emmett, M.R.4
Marshall, A.G.5
Tuma, R.6
-
39
-
-
0346463026
-
Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages
-
Lisal, J., Kainov, D.E., Bamford, D.H., Thomas, G.J. Jr and Tuma, R. (2004) Enzymatic mechanism of RNA translocation in double-stranded RNA bacteriophages. J. Biol. Chem., 279, 1343-1350.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 1343-1350
-
-
Lisal, J.1
Kainov, D.E.2
Bamford, D.H.3
Thomas Jr., G.J.4
Tuma, R.5
-
40
-
-
0028805187
-
Doublestranded RNA bacteriophage phi 6 protein P4 is an unspecific nucleoside triphosphatase activated by calcium ions
-
Paatero, A.O., Syvaoja, J.E. and Bamford, D.H. (1995) Doublestranded RNA bacteriophage phi 6 protein P4 is an unspecific nucleoside triphosphatase activated by calcium ions. J. Virol., 69, 6729-6734.
-
(1995)
J. Virol.
, vol.69
, pp. 6729-6734
-
-
Paatero, A.O.1
Syvaoja, J.E.2
Bamford, D.H.3
-
41
-
-
0037427447
-
Conserved intermediates on the assembly pathway of doublestranded RNA bacteriophages
-
Kainov, D.E., Butcher, S.J., Bamford, D.H. and Tuma, R. (2003) Conserved intermediates on the assembly pathway of doublestranded RNA bacteriophages. J. Mol. Biol., 328, 791-804.
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 791-804
-
-
Kainov, D.E.1
Butcher, S.J.2
Bamford, D.H.3
Tuma, R.4
-
42
-
-
0345800877
-
Order and disorder in crystals of hexameric NTPases from dsRNA bacteriophages
-
Mancini, E.J., Grimes, J.M., Malby, R., Sutton, G.C., Kainov, D.E., Juuti, J.T., Makeyev, E.V., Tuma, R., Bamford, D.H. and Stuart, D.I. (2003) Order and disorder in crystals of hexameric NTPases from dsRNA bacteriophages. Acta Crystallogr. D Biol. Crystallogr., 59, 2337-2341.
-
(2003)
Acta Crystallogr. D Biol. Crystallogr.
, vol.59
, pp. 2337-2341
-
-
Mancini, E.J.1
Grimes, J.M.2
Malby, R.3
Sutton, G.C.4
Kainov, D.E.5
Juuti, J.T.6
Makeyev, E.V.7
Tuma, R.8
Bamford, D.H.9
Stuart, D.I.10
-
43
-
-
0027417243
-
Protein P4 of double-stranded RNA bacteriophage phi 6 is accessible on the nucleocapsid surface: Epitope mapping and orientation of the protein
-
Ojala, P.M., Juuti, J.T. and Bamford, D.H. (1993) Protein P4 of double-stranded RNA bacteriophage phi 6 is accessible on the nucleocapsid surface: epitope mapping and orientation of the protein. J. Virol., 67, 2879-2886.
-
(1993)
J. Virol.
, vol.67
, pp. 2879-2886
-
-
Ojala, P.M.1
Juuti, J.T.2
Bamford, D.H.3
-
44
-
-
35648976000
-
Stochastic detection of motor protein-RNA complexes by single-channel current recording
-
Astier, Y., Kainov, D.E., Bayley, H., Tuma, R. and Howorka, S. (2007) Stochastic detection of motor protein-RNA complexes by single-channel current recording. Chemphyschem, 8, 2189-2194.
-
(2007)
Chemphyschem
, vol.8
, pp. 2189-2194
-
-
Astier, Y.1
Kainov, D.E.2
Bayley, H.3
Tuma, R.4
Howorka, S.5
-
45
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z. and Minor, W. (1996) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 307-326.
-
(1996)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
46
-
-
34447508216
-
Phaser crystallographic software
-
McCoy, A.J., Grosse-Kunstleve, R.W., Adams, P.D., Winn, M.D., Storoni, L.C. and Read, R.J. (2007) Phaser crystallographic software. J. Appl. Crystallogr., 40, 658-674.
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
47
-
-
32944456658
-
Overcoming the false-minima problem in direct methods: Structure determination of the packaging enzyme P4 from bacteriophage phi13
-
Meier, C., Mancini, E.J., Bamford, D.H., Walsh, M.A., Stuart, D.I. and Grimes, J.M. (2005) Overcoming the false-minima problem in direct methods: structure determination of the packaging enzyme P4 from bacteriophage phi13. Acta Crystallogr. D Biol. Crystallogr., 61, 1238-1244.
-
(2005)
Acta Crystallogr. D Biol. Crystallogr.
, vol.61
, pp. 1238-1244
-
-
Meier, C.1
Mancini, E.J.2
Bamford, D.H.3
Walsh, M.A.4
Stuart, D.I.5
Grimes, J.M.6
-
48
-
-
77950793231
-
Experimental phasing with SHELXC/D/E: Combining chain tracing with density modification
-
Sheldrick, G.M. (2010) Experimental phasing with SHELXC/D/E: combining chain tracing with density modification. Acta Crystallogr. D Biol. Crystallogr., 66, 479-485.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 479-485
-
-
Sheldrick, G.M.1
-
49
-
-
36549027357
-
Automated structure solution with autoSHARP
-
Vonrhein, C., Blanc, E., Roversi, P. and Bricogne, G. (2007) Automated structure solution with autoSHARP. Methods Mol. Biol., 364, 215-230.
-
(2007)
Methods Mol. Biol.
, vol.364
, pp. 215-230
-
-
Vonrhein, C.1
Blanc, E.2
Roversi, P.3
Bricogne, G.4
-
51
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams, P.D., Grosse-Kunstleve, R.W., Hung, L.W., Ioerger, T.R., McCoy, A.J., Moriarty, N.W., Read, R.J., Sacchettini, J.C., Sauter, N.K. and Terwilliger, T.C. (2002) PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D Biol. Crystallogr., 58, 1948-1954.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
53
-
-
84873106260
-
-
global phasing Ltd, Cambridge
-
Bricogne, G., Blanc, E., Brandl, M., Flensburg, C., Keller, P., Paciorek, W., Roversi, P., Smart, O.S., Vonrhein, C. And Womack, T. (2008). BUSTER-TNT 2.5.1 and AUTOBUSTER 1.3.1, Global Phasing Ltd, Cambridge.
-
(2008)
BUSTER-TNT 2.5.1 and AUTOBUSTER 1.3.1
-
-
Bricogne, G.1
Blanc, E.2
Brandl, M.3
Flensburg, C.4
Keller, P.5
Paciorek, W.6
Roversi, P.7
Smart, O.S.8
Vonrhein, C.9
Womack, T.10
-
54
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov, G.N., Skubak, P., Lebedev, A.A., Pannu, N.S., Steiner, R.A., Nicholls, R.A., Winn, M.D., Long, F. and Vagin, A.A. (2011) REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr. D Biol. Crystallogr., 67, 355-367.
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubak, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
55
-
-
34547592557
-
MolProbity: All-atom contacts and structure validation for proteins and nucleic acids
-
Davis, I.W., Leaver-Fay, A., Chen, V.B., Block, J.N., Kapral, G.J., Wang, X., Murray, L.W., Arendall, W.B. 3rd, Snoeyink, J., Richardson, J.S. et al. (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res., 35, W375-W383.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall III, W.B.8
Snoeyink, J.9
Richardson, J.S.10
-
56
-
-
77954288774
-
Dali server: Conservation mapping in 3D
-
Holm, L. and Rosenstrom, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res., 38, W545-W549.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Holm, L.1
Rosenstrom, P.2
-
57
-
-
0018792428
-
Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A
-
Stuart, D.I., Levine, M., Muirhead, H. and Stammers, D.K. (1979) Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A. J. Mol. Biol., 134, 109-142.
-
(1979)
J. Mol. Biol.
, vol.134
, pp. 109-142
-
-
Stuart, D.I.1
Levine, M.2
Muirhead, H.3
Stammers, D.K.4
-
58
-
-
0013217441
-
-
Wiley, VCH Verlag GmbH & Co, KGaA, Weinheim, FRG
-
Levin, M.K. and Patel, S.S. (2004) Molecular Motors. Wiley-VCH Verlag GmbH & Co, KGaA, Weinheim, FRG, pp. 179-203.
-
(2004)
Molecular Motors.
, pp. 179-203
-
-
Levin, M.K.1
Patel, S.S.2
-
59
-
-
33750477997
-
Structural insights into RNA-dependent ring closure and ATPase activation by the Rho termination factor
-
Skordalakes, E. and Berger, J.M. (2006) Structural insights into RNA-dependent ring closure and ATPase activation by the Rho termination factor. Cell, 127, 553-564.
-
(2006)
Cell
, vol.127
, pp. 553-564
-
-
Skordalakes, E.1
Berger, J.M.2
-
60
-
-
20744437001
-
RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
-
Yang, Z.R., Thomson, R., McNeil, P. and Esnouf, R.M. (2005) RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. Bioinformatics, 21, 3369-3376.
-
(2005)
Bioinformatics
, vol.21
, pp. 3369-3376
-
-
Yang, Z.R.1
Thomson, R.2
McNeil, P.3
Esnouf, R.M.4
-
61
-
-
0031774382
-
Mutational analysis of the role of nucleoside triphosphatase P4 in the assembly of the RNA polymerase complex of bacteriophage phi6
-
Paatero, A.O., Mindich, L. and Bamford, D.H. (1998) Mutational analysis of the role of nucleoside triphosphatase P4 in the assembly of the RNA polymerase complex of bacteriophage phi6. J. Virol., 72, 10058-10065.
-
(1998)
J. Virol.
, vol.72
, pp. 10058-10065
-
-
Paatero, A.O.1
Mindich, L.2
Bamford, D.H.3
-
62
-
-
57149091105
-
Insights into RNA unwinding and ATP hydrolysis by the flavivirus NS3 protein
-
Luo, D., Xu, T., Watson, R.P., Scherer-Becker, D., Sampath, A., Jahnke, W., Yeong, S.S., Wang, C.H., Lim, S.P., Strongin, A. et al. (2008) Insights into RNA unwinding and ATP hydrolysis by the flavivirus NS3 protein. EMBO J., 27, 3209-3219.
-
(2008)
EMBO J.
, vol.27
, pp. 3209-3219
-
-
Luo, D.1
Xu, T.2
Watson, R.P.3
Scherer-Becker, D.4
Sampath, A.5
Jahnke, W.6
Yeong, S.S.7
Wang, C.H.8
Lim, S.P.9
Strongin, A.10
-
63
-
-
0344874271
-
Hexameric RSF1010 helicase RepA: The structural and functional importance of single amino acid residues
-
Ziegelin, G., Niedenzu, T., Lurz, R., Saenger, W. and Lanka, E. (2003) Hexameric RSF1010 helicase RepA: the structural and functional importance of single amino acid residues. Nucleic Acids Res., 31, 5917-5929.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5917-5929
-
-
Ziegelin, G.1
Niedenzu, T.2
Lurz, R.3
Saenger, W.4
Lanka, E.5
-
64
-
-
57649228017
-
The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces
-
Sun, S., Kondabagil, K., Draper, B., Alam, T.I., Bowman, V.D., Zhang, Z., Hegde, S., Fokine, A., Rossmann, M.G. and Rao, V.B. (2008) The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces. Cell, 135, 1251-1262.
-
(2008)
Cell
, vol.135
, pp. 1251-1262
-
-
Sun, S.1
Kondabagil, K.2
Draper, B.3
Alam, T.I.4
Bowman, V.D.5
Zhang, Z.6
Hegde, S.7
Fokine, A.8
Rossmann, M.G.9
Rao, V.B.10
-
65
-
-
84878563524
-
The structure of the herpes simplex virus DNApackaging terminase pUL15 nuclease domain suggests an evolutionary lineage among eukaryotic and prokaryotic viruses
-
Selvarajan Sigamani, S., Zhao, H., Kamau, Y.N., Baines, J.D. and Tang, L. (2013) The structure of the herpes simplex virus DNApackaging terminase pUL15 nuclease domain suggests an evolutionary lineage among eukaryotic and prokaryotic viruses. J. Virol., 87, 7140-7148.
-
(2013)
J. Virol.
, vol.87
, pp. 7140-7148
-
-
Selvarajan Sigamani, S.1
Zhao, H.2
Kamau, Y.N.3
Baines, J.D.4
Tang, L.5
-
66
-
-
84879785627
-
The ATPase of the phi29 DNA packaging motor is a member of the hexameric AAA+superfamily
-
Schwartz, C., De Donatis, G.M., Fang, H. and Guo, P. (2013) The ATPase of the phi29 DNA packaging motor is a member of the hexameric AAA+superfamily. Virology, 443, 20-27.
-
(2013)
Virology
, vol.443
, pp. 20-27
-
-
Schwartz, C.1
De Donatis, G.M.2
Fang, H.3
Guo, P.4
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