Overcoming the false-minima problem in direct methods: Structure determination of the packaging enzyme P4 from bacteriophage φ13

Acta Crystallographica Section D: Biological Crystallography

Volumn 61, Issue 9, 2005, Pages 1238-1244

  Meier, Christoph ^a   Mancini, Erika J ^a   Bamford, Dennis H ^b   Walsh, Martin A ^c   Stuart, David I ^a   Grimes, Jonathan M ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF HELSINKI   (Finland)

^c EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEASE; P4 PROTEIN, BACTERIOPHAGE PHI 13; SELENIUM; VIRUS PROTEIN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; METHODOLOGY; PROTEIN CONFORMATION; STANDARD; TECHNIQUE; X RAY CRYSTALLOGRAPHY;

CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; ENDODEOXYRIBONUCLEASES; METHODS; MOLECULAR STRUCTURE; PROTEIN CONFORMATION; SELENIUM; VIRAL PROTEINS;

EID: 32944456658     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444905019761     Document Type: Article

References (25)

1. Blessing, R. H. & Smith, G. D. (1999). J. Appl. Cryst. 32, 664-670.
2. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
3. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
4. Deacon, A., Weeks, C., Miller, R. & Ealick, S. (1998). Proc. Natl Acad. Sci. USA, 95, 9284-9289.
5. Deacon, A. M. & Ealick, S. E. (1999). Structure, 7, 161-166.
6. Delft, F. von, Inoue, T., Saldanha, S. A., Ottenhof, H. H., Schmitzberger, F., Birch, L. M., Dhanaraj, V., Witty, M., Smith, A. G., Blundell, T. L. & Abell, C. (2003). Structure, 11, 985-996.
7. Evans, G. & Pettifer, R. F. (2001). J. Appl. Cryst. 34, 82-86.
8. Green, D. W., Ingram, V. M. & Perutz, M. F. (1954). Proc. R. Soc. London Ser. A, 225, 287-307.
9. Harlos, K. (1992). J. Appl. Cryst. 25, 536-538.
10. Hendrickson, W. A. (1991). Science, 254, 51-58.
11. Kainov, D. E., Pirttimaa, M., Tuma, R., Butcher, S. J., Thomas, G. J. Jr, Bamford, D. H. & Makeyev, E. V. (2003). J. Biol. Chem. 278, 48084-48091.
12. La Fortelle, E. de & Bricogne, G. (1997). Methods Enzymol. 276, 472-494.
13. Mancini, E. J., Grimes, J. M., Malby, R., Sutton, G. C., Kainov, D. E., Juuti, J. T., Makeyev, E. V., Tuma, R., Bamford, D. H. & Stuart, D. I. (2003). Acta Cryst. D59, 2337-2341.
14. Mancini, E. J., Kainov, D. E., Grimes, J. M., Tuma, R., Bamford, D. H. & Stuart, D. I. (2004). Cell, 118, 743-755.
15. Mancini, E. J., Kainov, D. E., Wei, H., Gottlieb, P., Tuma, R., Bamford, D. H., Stuart, D. I. & Grimes, J. M. (2004). Acta Cryst. D60, 588-590.
16. Miller, R., DeTitta, G. T., Jones, R., Langs, D. A., Weeks, C. M. & Hauptman, H. A. (1993). Science, 259, 1430-1433.
17. Mindich, L. (1999). Microbiol. Mol. Biol. Rev. 63, 149-160.
18. Nanduri, B., Byrd, A., Eoff, R. L., Tackett, A. J. & Raney, K. D. (2002). Proc. Natl Acad. Sci. USA, 99, 14722-14727.
19. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
20. Schneider, T. R. & Sheldrick, G. M. (2002). Acta Cryst. D58, 1772-1779.
21. Sheldrick, G. M., Hauptman, H. A., Weeks, C. M., Miller, R. & Uson, I. (2001). International Tables for Crystallography, Vol. F, edited by M. G. Rossmann & E. Arnold, pp 333-351. Dordrecht: Kluwer Academic Publishers.
22. Sheldrick, G. M. & Schneider, T. R. (1997). Methods Enzymol. 277, 319-343.
23. Weeks, C. M. & Miller, R. (1999). J. Appl. Cryst. 32, 120-124.
24. Weeks, C. M., Sheldrick, G. M., Miller, R., Uson, I. & Hauptman, H. A. (2001). Advances in Structure Analysis (XVIIIth European Crystallographic Meeting, 16-20 August 1998, Prague, Czech Republic), edited by R. Kusel & J. Hasek, pp. 37-64. Prague: Czech & Slovak Crystallographic Association.
25. Xu, H., Weeks, C. M., Deacon, A. M., Miller, R. & Hauptman, H. A. (2000). Acta Cryst. A56, 112-118.