-
1
-
-
0003273069
-
Isolation, purification, and function of assembly intermediates and subviral particles of bacteriophage PRD1 and φ6
-
Bamford DH, Ojala PM, Frilander M, Walin L, Bamford JKH. 1995. Isolation, purification, and function of assembly intermediates and subviral particles of bacteriophage PRD1 and φ6. Methods Mol Genet 6:455-474.
-
(1995)
Methods Mol Genet
, vol.6
, pp. 455-474
-
-
Bamford, D.H.1
Ojala, P.M.2
Frilander, M.3
Walin, L.4
Bamford, J.K.H.5
-
2
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
3
-
-
0030872369
-
Intermediates in the assembly pathway of the double-stranded RNA virus φ6
-
Butcher SJ, Dokland T, Ojala PM, Bamford DH, Fuller SD. 1997. Intermediates in the assembly pathway of the double-stranded RNA virus φ6. EMBO J 16:4477-4487.
-
(1997)
EMBO J
, vol.16
, pp. 4477-4487
-
-
Butcher, S.J.1
Dokland, T.2
Ojala, P.M.3
Bamford, D.H.4
Fuller, S.D.5
-
4
-
-
0033607480
-
A symmetry mismatch at the site of RNA packaging in the polymerase complex of dsRNA bacteriophage φ6
-
de Haas F, Paatero AO, Mindich L, Bamford DH, Fuller SD. 1999. A symmetry mismatch at the site of RNA packaging in the polymerase complex of dsRNA bacteriophage φ6. J Mol Biol 294:357-372.
-
(1999)
J Mol Biol
, vol.294
, pp. 357-372
-
-
De Haas, F.1
Paatero, A.O.2
Mindich, L.3
Bamford, D.H.4
Fuller, S.D.5
-
5
-
-
0030829855
-
RnaViz, a program for the visualization of RNA secondary structure
-
De Rijk P, De Wachter R. 1997. RnaViz, a program for the visualization of RNA secondary structure. Nucleic Acids Res 25:4679-4684.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4679-4684
-
-
De Rijk, P.1
De Wachter, R.2
-
6
-
-
0023665268
-
Probing the structure of RNAs in solution
-
Ehresmann C, Baudin F, Mougel M, Romby P, Ebel J-P, Ehresmann B. 1987. Probing the structure of RNAs in solution. Nucleic Acids Res 15:9109-9128.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 9109-9128
-
-
Ehresmann, C.1
Baudin, F.2
Mougel, M.3
Romby, P.4
Ebel, J.-P.5
Ehresmann, B.6
-
7
-
-
0028928032
-
In vitro packaging of the single-stranded RNA genomic precursors of the double-stranded RNA bacteriophage φ6: The three segments modulate each other's packaging efficiency
-
Frilander M, Bamford DH. 1995. In vitro packaging of the single-stranded RNA genomic precursors of the double-stranded RNA bacteriophage φ6: The three segments modulate each other's packaging efficiency. J Mol Biol 246:418-428.
-
(1995)
J Mol Biol
, vol.246
, pp. 418-428
-
-
Frilander, M.1
Bamford, D.H.2
-
8
-
-
0026627864
-
Dependence of minus-strand synthesis on complete genomic packaging in the double-stranded RNA bacteriophage φ6
-
Frilander M, Gottlieb P, Strassman J, Bamford DH, Mindich L 1992. Dependence of minus-strand synthesis on complete genomic packaging in the double-stranded RNA bacteriophage φ6. J Virol 66:5013-5017.
-
(1992)
J Virol
, vol.66
, pp. 5013-5017
-
-
Frilander, M.1
Gottlieb, P.2
Strassman, J.3
Bamford, D.H.4
Mindich, L.5
-
9
-
-
0029330856
-
The large genome segment of dsRNA bacteriophage φ6 is the key regulator in the in vitro minus and plus strand synthesis
-
Frilander M, Poranen M, Bamford DH. 1995. The large genome segment of dsRNA bacteriophage φ6 is the key regulator in the in vitro minus and plus strand synthesis. RNA 1:510-518.
-
(1995)
RNA
, vol.1
, pp. 510-518
-
-
Frilander, M.1
Poranen, M.2
Bamford, D.H.3
-
10
-
-
0023841702
-
Nucleotide sequence of the middle dsRNA segment of bacteriophage φ6: Placement of the genes of membrane-associated proteins
-
Gottlieb P, Metzger S, Romantschuk M, Carton J, Strassman J, Bamford DH, Kalkkinen N, Mindich L. 1988a. Nucleotide sequence of the middle dsRNA segment of bacteriophage φ6: Placement of the genes of membrane-associated proteins. Virology 163:183-190.
-
(1988)
Virology
, vol.163
, pp. 183-190
-
-
Gottlieb, P.1
Metzger, S.2
Romantschuk, M.3
Carton, J.4
Strassman, J.5
Bamford, D.H.6
Kalkkinen, N.7
Mindich, L.8
-
11
-
-
0028222195
-
Identification of the packaging regions within the genomic RNA segments of bacteriophage φ6
-
Gottlieb P, Qiao X, Strassman J, Frilander M, Mindich L. 1994. Identification of the packaging regions within the genomic RNA segments of bacteriophage φ6. Virology 200:42-47.
-
(1994)
Virology
, vol.200
, pp. 42-47
-
-
Gottlieb, P.1
Qiao, X.2
Strassman, J.3
Frilander, M.4
Mindich, L.5
-
12
-
-
0023675432
-
Production of a polyhedral particle in Escherichia coli from a cDNA copy of the large genomic segment of bacteriophage φ6
-
Gottlieb P, Strassman J, Bamford DH, Mindich L. 1988b. Production of a polyhedral particle in Escherichia coli from a cDNA copy of the large genomic segment of bacteriophage φ6. J Virol 62:181-187.
-
(1988)
J Virol
, vol.62
, pp. 181-187
-
-
Gottlieb, P.1
Strassman, J.2
Bamford, D.H.3
Mindich, L.4
-
13
-
-
0025893698
-
In vitro packaging of the bacteriophage φ6 ssRNA genomic precursors
-
Gottlieb P, Strassman J, Frucht A, Qiao X, Mindich L. 1991. In vitro packaging of the bacteriophage φ6 ssRNA genomic precursors. Virology 181:589-594.
-
(1991)
Virology
, vol.181
, pp. 589-594
-
-
Gottlieb, P.1
Strassman, J.2
Frucht, A.3
Qiao, X.4
Mindich, L.5
-
14
-
-
0026657924
-
Protein P4 of the bacteriophage φ6 procapsid has a nucleoside triphosphate-binding site with associated nucleoside triphosphate phosphohydrolase activity
-
Gottlieb P, Strassman J, Mindich L. 1992a. Protein P4 of the bacteriophage φ6 procapsid has a nucleoside triphosphate-binding site with associated nucleoside triphosphate phosphohydrolase activity. J Virol 66:6220-6222.
-
(1992)
J Virol
, vol.66
, pp. 6220-6222
-
-
Gottlieb, P.1
Strassman, J.2
Mindich, L.3
-
15
-
-
0026560654
-
In vitro packaging and replication of individual genomic segments of bacteriophage φ6 RNA
-
Gottlieb P, Strassman J, Qiao X, Frilander M, Frucht A, Mindich L. 1992b. In vitro packaging and replication of individual genomic segments of bacteriophage φ6 RNA. J Virol 66:2611-2616.
-
(1992)
J Virol
, vol.66
, pp. 2611-2616
-
-
Gottlieb, P.1
Strassman, J.2
Qiao, X.3
Frilander, M.4
Frucht, A.5
Mindich, L.6
-
16
-
-
0025030197
-
In vitro replication, packaging and transcription of the segmented double-stranded RNA genome of bacteriophage φ6: Studies with procapsids assembled from plasmid-encoded proteins
-
Gottlieb P, Strassman J, Qiao X, Frucht A, Mindich L. 1990. In vitro replication, packaging and transcription of the segmented double-stranded RNA genome of bacteriophage φ6: Studies with procapsids assembled from plasmid-encoded proteins. J Bacteriol 172:5774-5782.
-
(1990)
J Bacteriol
, vol.172
, pp. 5774-5782
-
-
Gottlieb, P.1
Strassman, J.2
Qiao, X.3
Frucht, A.4
Mindich, L.5
-
17
-
-
0029060842
-
RNA binding, packaging and polymerase activities of the different incomplete polymerase complex particles of dsRNA bacteriophage φ6
-
Juuti JT, Bamford DH. 1995. RNA binding, packaging and polymerase activities of the different incomplete polymerase complex particles of dsRNA bacteriophage φ6. J Mol Biol 249:545-554.
-
(1995)
J Mol Biol
, vol.249
, pp. 545-554
-
-
Juuti, J.T.1
Bamford, D.H.2
-
18
-
-
0031567131
-
Protein P7 of phage φ6 RNA polymerase complex, acquiring of RNA packaging activity by in vitro assembly of the purified protein onto deficient particles
-
Juuti JT, Bamford DH. 1997. Protein P7 of phage φ6 RNA polymerase complex, acquiring of RNA packaging activity by in vitro assembly of the purified protein onto deficient particles. J Mol Biol 266:891-900.
-
(1997)
J Mol Biol
, vol.266
, pp. 891-900
-
-
Juuti, J.T.1
Bamford, D.H.2
-
19
-
-
0032486109
-
Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage φ6
-
Juuti JT, Bamford DH, Tuma R, Thomas GJ Jr. 1998. Structure and NTPase activity of the RNA-translocating protein (P4) of bacteriophage φ6. J Mol Biol 279:347-359.
-
(1998)
J Mol Biol
, vol.279
, pp. 347-359
-
-
Juuti, J.T.1
Bamford, D.H.2
Tuma, R.3
Thomas G.J., Jr.4
-
20
-
-
0022973884
-
On the recognition of helical RNA by cobra venom V1 nuclease
-
Lowman HB, Draper DE. 1986. On the recognition of helical RNA by cobra venom V1 nuclease. J Biol Chem 261:5396-5403.
-
(1986)
J Biol Chem
, vol.261
, pp. 5396-5403
-
-
Lowman, H.B.1
Draper, D.E.2
-
21
-
-
0034602836
-
Replicase activity of purified recombinant protein P2 of double-stranded RNA bacteriophage φ6
-
Makeyev EV, Bamford DH. 2000. Replicase activity of purified recombinant protein P2 of double-stranded RNA bacteriophage φ6. EMBO J 19:124-133.
-
(2000)
EMBO J
, vol.19
, pp. 124-133
-
-
Makeyev, E.V.1
Bamford, D.H.2
-
22
-
-
0031014702
-
Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element
-
Mathews DH, Banerjee AR, Luan DD, Eickbush TH, Turner DH. 1997. Secondary structure model of the RNA recognized by the reverse transcriptase from the R2 retrotransposable element. RNA 3:1-16.
-
(1997)
RNA
, vol.3
, pp. 1-16
-
-
Mathews, D.H.1
Banerjee, A.R.2
Luan, D.D.3
Eickbush, T.H.4
Turner, D.H.5
-
23
-
-
0029955048
-
RNAdraw: An integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows
-
Matzura O, Wennborg A. 1996. RNAdraw: An integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. Comput Appl Biosci 12:247-249.
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 247-249
-
-
Matzura, O.1
Wennborg, A.2
-
24
-
-
0022453903
-
Nucleotide sequence of the small double-stranded RNA segment of bacteriophage φ6: Novel mechanism of natural translational control
-
McGraw T, Mindich L, Frangione B. 1986. Nucleotide sequence of the small double-stranded RNA segment of bacteriophage φ6: Novel mechanism of natural translational control. J Virol 58:142-151.
-
(1986)
J Virol
, vol.58
, pp. 142-151
-
-
McGraw, T.1
Mindich, L.2
Frangione, B.3
-
25
-
-
0033007294
-
Precise packaging of the three genomic segments of the double-stranded-RNA bacteriophage φ6
-
Mindich L. 1999. Precise packaging of the three genomic segments of the double-stranded-RNA bacteriophage φ6. Microbiol Mol Biol Rev 63:149-160.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 149-160
-
-
Mindich, L.1
-
26
-
-
0023991207
-
Nucleotide sequence of the large double-stranded RNA segment of bacteriophage φ6: Genes specifying the viral replicase and transcriptase
-
Mindich L, Nemhauser I, Gottlieb P, Romantschuk M, Carton J, Frucht S, Strassman J, Bamford DH, Kalkkinen N. 1988. Nucleotide sequence of the large double-stranded RNA segment of bacteriophage φ6: Genes specifying the viral replicase and transcriptase. J Virol 62:1180-1185.
-
(1988)
J Virol
, vol.62
, pp. 1180-1185
-
-
Mindich, L.1
Nemhauser, I.2
Gottlieb, P.3
Romantschuk, M.4
Carton, J.5
Frucht, S.6
Strassman, J.7
Bamford, D.H.8
Kalkkinen, N.9
-
27
-
-
0027978133
-
RNA structural requirements for stability and minus-strand synthesis in the dsRNA bacteriophage φ6
-
Mindich L, Qiao X, Onodera S, Gottlieb P, Frilander M. 1994. RNA structural requirements for stability and minus-strand synthesis in the dsRNA bacteriophage φ6. Virology 202:258-263.
-
(1994)
Virology
, vol.202
, pp. 258-263
-
-
Mindich, L.1
Qiao, X.2
Onodera, S.3
Gottlieb, P.4
Frilander, M.5
-
28
-
-
0032811843
-
Isolation of additional bacteriophages with genomes of segmented double-stranded RNA
-
Mindich L, Qiao X, Qiao J, Onodera S, Romantschuk M, Hoogstraten D. 1999. Isolation of additional bacteriophages with genomes of segmented double-stranded RNA. J Bacteriol 181:4505-4508.
-
(1999)
J Bacteriol
, vol.181
, pp. 4505-4508
-
-
Mindich, L.1
Qiao, X.2
Qiao, J.3
Onodera, S.4
Romantschuk, M.5
Hoogstraten, D.6
-
29
-
-
0022470564
-
Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension
-
Moazed D, Stern S, Noller HF. 1986. Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension. J Mol Biol 187:399-416.
-
(1986)
J Mol Biol
, vol.187
, pp. 399-416
-
-
Moazed, D.1
Stern, S.2
Noller, H.F.3
-
30
-
-
0027417243
-
Protein P4 of double-stranded RNA bacteriophage φ6 is accessible on the nucleocapsid surface: Epitope mapping and orientation of the protein
-
Ojala PM, Juuti JT, Bamford DH. 1993. Protein P4 of double-stranded RNA bacteriophage φ6 is accessible on the nucleocapsid surface: Epitope mapping and orientation of the protein. J Virol 67:2879-2886.
-
(1993)
J Virol
, vol.67
, pp. 2879-2886
-
-
Ojala, P.M.1
Juuti, J.T.2
Bamford, D.H.3
-
31
-
-
0025193989
-
Purified φ6 nucleo-capsids are capable of productive infection of host cells with partially disrupted outer membranes
-
Ojala PM, Romantschuk M, Bamford DH. 1990. Purified φ6 nucleo-capsids are capable of productive infection of host cells with partially disrupted outer membranes. Virology 178:364-372.
-
(1990)
Virology
, vol.178
, pp. 364-372
-
-
Ojala, P.M.1
Romantschuk, M.2
Bamford, D.H.3
-
32
-
-
0023278327
-
The nucleocapsid of the lipid-containing double-stranded RNA bacteriophage φ6 contains a protein skeleton consisting of a single polypeptide species
-
Olkkonen VM, Bamford DB. 1987. The nucleocapsid of the lipid-containing double-stranded RNA bacteriophage φ6 contains a protein skeleton consisting of a single polypeptide species. J Virol 67:2362-2367.
-
(1987)
J Virol
, vol.67
, pp. 2362-2367
-
-
Olkkonen, V.M.1
Bamford, D.B.2
-
33
-
-
0025606353
-
In vitro assembly of infectious nucleocapsids of bacteriophage φ6: Formation of a recombinant double-stranded RNA virus
-
Olkkonen VM, Gottlieb P, Strassman J, Qiao X, Bamford DH, Mindich L. 1990. In vitro assembly of infectious nucleocapsids of bacteriophage φ6: Formation of a recombinant double-stranded RNA virus. Proc Natl Acad Sci USA 87:9173-9177.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 9173-9177
-
-
Olkkonen, V.M.1
Gottlieb, P.2
Strassman, J.3
Qiao, X.4
Bamford, D.H.5
Mindich, L.6
-
34
-
-
0025892607
-
Generation of infectious nucleocapsids by in vitro assembly of the shell protein on to the polymerase complex of the dsRNA bacteriophage φ6
-
Olkkonen VM, Ojala PM, Bamford DH. 1991. Generation of infectious nucleocapsids by in vitro assembly of the shell protein on to the polymerase complex of the dsRNA bacteriophage φ6. J Mol Biol 218:569-581.
-
(1991)
J Mol Biol
, vol.218
, pp. 569-581
-
-
Olkkonen, V.M.1
Ojala, P.M.2
Bamford, D.H.3
-
35
-
-
0028805187
-
Double-stranded RNA bacteriophage φ6 protein P4 is an unspecific nucleoside triphosphatase activated by calcium ions
-
Paatero AO, Syväoja JE, Bamford DH. 1995. Double-stranded RNA bacteriophage φ6 protein P4 is an unspecific nucleoside triphosphatase activated by calcium ions. J Virol 69:6729-6734.
-
(1995)
J Virol
, vol.69
, pp. 6729-6734
-
-
Paatero, A.O.1
Syväoja, J.E.2
Bamford, D.H.3
-
36
-
-
0032978372
-
Packaging and regulation revealed by chimeric genome segments of double-stranded RNA bacteriophage φ6
-
Poranen MM, Bamford DH. 1999. Packaging and regulation revealed by chimeric genome segments of double-stranded RNA bacteriophage φ6. RNA 5:446-454.
-
(1999)
RNA
, vol.5
, pp. 446-454
-
-
Poranen, M.M.1
Bamford, D.H.2
-
38
-
-
0028916125
-
In vitro packaging of individual genomic segments of bacteriophage φ6 RNA: Serial dependence relationships
-
Qiao X, Casini G, Qiao J, Mindich L. 1995a. In vitro packaging of individual genomic segments of bacteriophage φ6 RNA: Serial dependence relationships. J Virol 69:2926-2931.
-
(1995)
J Virol
, vol.69
, pp. 2926-2931
-
-
Qiao, X.1
Casini, G.2
Qiao, J.3
Mindich, L.4
-
39
-
-
0028984351
-
Interference with bacteriophage φ6 genomic RNA packaging by hairpin structures
-
Qiao X, Qiao J, Mindich L. 1995b. Interference with bacteriophage φ6 genomic RNA packaging by hairpin structures. J Virol 69: 5502-5505.
-
(1995)
J Virol
, vol.69
, pp. 5502-5505
-
-
Qiao, X.1
Qiao, J.2
Mindich, L.3
-
40
-
-
0030887625
-
Stoichiometric packaging of the three genomic segments of double stranded RNA bacteriophage φ6
-
Qiao X, Qiao J, Mindich L. 1997. Stoichiometric packaging of the three genomic segments of double stranded RNA bacteriophage φ6. Proc Natl Acad Sci USA 94:4074-4079.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 4074-4079
-
-
Qiao, X.1
Qiao, J.2
Mindich, L.3
-
41
-
-
0015910976
-
Characterization of a segmented double-helical RNA from bacteriophage φ6
-
Semancik JS, Vidaver AK, Van Etten JL. 1973. Characterization of a segmented double-helical RNA from bacteriophage φ6. J Mol Biol 78:617-625.
-
(1973)
J Mol Biol
, vol.78
, pp. 617-625
-
-
Semancik, J.S.1
Vidaver, A.K.2
Van Etten, J.L.3
-
42
-
-
0024241761
-
Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
-
Stern S, Moazed D, Noller HF. 1988. Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol 164:481-489.
-
(1988)
Methods Enzymol
, vol.164
, pp. 481-489
-
-
Stern, S.1
Moazed, D.2
Noller, H.F.3
-
43
-
-
0015876365
-
Bacteriophage φ6: A lipid-containing virus of Pseudomonas phaseolicola
-
Vidaver AK, Koski RK, Van Etten JL 1973. Bacteriophage φ6: A lipid-containing virus of Pseudomonas phaseolicola. J Virol 11: 799-805.
-
(1973)
J Virol
, vol.11
, pp. 799-805
-
-
Vidaver, A.K.1
Koski, R.K.2
Van Etten, J.L.3
-
44
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
Yanisch-Perron C, Vieira J, Messing J. 1985. Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
-
(1985)
Gene
, vol.33
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
45
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
Zuker M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244:48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
|