Biosensing enhancement using passive mixing structures for microarray-based sensors

Biosensors and Bioelectronics

Volumn 54, Issue , 2014, Pages 506-514

  Lynn, N Scott ^a   Martínez López, José Israel ^b   Bocková, Markéta ^a   Adam, Pavel ^a   Coello, Victor ^c   Siller, Héctor R ^b   Homola, Jiří ^a  

^a INSTITUTE OF PHOTONICS AND ELECTRONICS   (Czech Republic)

^b SCHOOL OF ENGINEERING AND SCIENCES   (Mexico)

^c CENTRO DE INVESTIGACIÓN CIENTÍFICA Y DE EDUCACIÓN SUPERIOR DE ENSENADA   (Mexico)

Author keywords

Biosensors; Mass transfer; Microarrays; Microfluidic mixing; Microfluidics

Indexed keywords

BIOSENSORS; EXPERIMENTS; LAMINAR FLOW; MASS TRANSFER; MICROARRAYS; MIXING; SENSORS; SIGNAL DETECTION;

BIOMOLECULAR INTERACTIONS; LAMINAR FLOW REGIMES; MASS TRANSFER LIMITATION; MICRO FLUIDIC SYSTEM; MICRO-ARRAY DETECTION; MICROARRAY TECHNOLOGIES; MICROFLUIDIC FLOW CELL; MICROFLUIDIC MIXING;

MICROFLUIDICS;

SINGLE STRANDED DNA;

ANALYTIC METHOD; ARTICLE; BINDING KINETICS; BIOSENSOR; FLOW RATE; MICROARRAY ANALYSIS; MICROFLUIDIC ANALYSIS; PASSIVE MIXING STRUCTURE; STRUCTURE ANALYSIS;

BIOSENSORS; MASS TRANSFER; MICROARRAYS; MICROFLUIDIC MIXING; MICROFLUIDICS;

BIOSENSING TECHNIQUES; DIFFUSION; DNA, SINGLE-STRANDED; EQUIPMENT DESIGN; MICROARRAY ANALYSIS; MICROFLUIDIC ANALYTICAL TECHNIQUES;

EID: 84890069736     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2013.11.027     Document Type: Article

References (35)

1. Adey N.B., Lei M., Howard M.T., Jensen J.D., Mayo D.A., Butel D.L., Coffin S.C., Moyer T.C., Slade D.E., Spute M.K., Hancock A.M., Eisenhoffer G.T., Dalley B.K., McNeely M.R. Gains in sensitivity with a device that mixes microarray hybridization solution in a 25-mu m-thick chamber. Anal. Chem. 2002, 74(24):6413-6417.
2. Beebe D.J., Mensing G.A., Walker G.M. Physics and applications of microfluidics in biology. Annu. Rev. Biomed. Eng. 2002, 4:261-286.
3. Bernard A., Michel B., Delamarche E. Micromosaic immunoassays. Anal. Chem. 2001, 73(1):8-12.
4. Campbell C.T., Kim G. SPR microscopy and its applications to high-throughput analyses of biomolecular binding events and their kinetics. Biomaterials 2007, 28(15):2380-2392.
5. Dandy D.S., Wu P., Grainger D.W. Array feature size influences nucleic acid surface capture in DNA microarrays. Proc. Natl. Acad. Sci. U.S.A. 2007, 104(20):8223-8228.
6. Eddings M.A., Eckman J.W., Arana C.A., Papalia G.A., Connolly J.E., Gale B.K., Myszka D.G. Spot and hop: internal referencing for surface plasmon resonance imaging using a three-dimensional microfluidic flow cell array. Anal. Biochem. 2009, 385(2):309-313.
7. Ekins R.P. Ligand assays: from electrophoresis to miniaturized microarrays. Clin. Chem. 1998, 44(9):2015-2030.
8. Ekins R.P., Chu F.W. Multianalyte microspot immunoassay-microanalytical compact-disk of the future. Clin. Chem. 1991, 37(11):1955-1967.
9. Finlayson B.A. Nonlinear Analysis in Chemical Engineering 1980, McGraw-Hill International Book Co., New York; London.
10. Foley J.O., Mashadi-Hossein A., Fu E., Finlayson B.A., Yager P. Experimental and model investigation of the time-dependent 2-dimensional distribution of binding in a herringbone microchannel. Lab. Chip 2008, 8(4):557-564.
11. Forbes T.P., Kralj J.G. Engineering and analysis of surface interactions in a microfluidic herringbone micromixer. Lab. Chip 2012, 12(15):2634-2637.
12. Golden J.P., Floyd-Smith T.M., Mott D.R., Ligler F.S. Target delivery in a microfluidic immunosensor. Biosens. Bioelectron. 2007, 22(11):2763-2767.
13. Hertzsch J.M., Sturman R., Wiggins S. DNA microarrays: design principles for maximizing ergodic, chaotic mixing. Small 2007, 3(2):202-218.
14. Hessel V., Lowe H., Schonfeld F. Micromixers-a review on passive and active mixing principles. Chem. Eng. Sci. 2005, 60(8-9):2479-2501.
15. Homola J., Vaisocherova H., Dostalek J., Piliarik M. Multi-analyte surface plasmon resonance biosensing. Methods 2005, 37(1):26-36.
16. Kirtland J.D., McGraw G.J., Stroock A.D. Mass transfer to reactive boundaries from steady three-dimensional flows in microchannels. Phys. Fluids 2006, 18:7.
17. Kusnezow W., Syagailo Y.V., Ruffer S., Baudenstiel N., Gauer C., Hoheisel J.D., Wild D., Goychuk I. Optimal design of microarray immunoassays to compensate for kinetic limitations-theory and experiment. Mol. Cell. Proteomics 2006, 5(9):1681-1696.
18. Liu J., Williams B.A., Gwirtz R.M., Wold B.J., Quake S. Enhanced signals and fast nucleic acid hybridization by microfluidic chaotic mixing. Angew. Chem. Int. Ed. 2006, 45(22):3618-3623.
19. Lynn N.S., Sipova H., Adam P., Homola J. Enhancement of affinity-based biosensors: effect of sensing chamber geometry on sensitivity. Lab. Chip 2013, 13(7):1413-1421.
20. Malic L., Veres T., Tabrizian M. Nanostructured digital microfluidics for enhanced surface plasmon resonance imaging. Biosens. Bioelectron. 2011, 26(5):2053-2059.
21. McQuain M.K., Seale K., Peek J., Fisher T.S., Levy S., Stremler M.A., Haselton F.R. Chaotic mixer improves microarray hybridization. Anal. Biochem. 2004, 325(2):215-226.
22. Piliarik M., Bockova M., Homola J. Surface plasmon resonance biosensor for parallelized detection of protein biomarkers in diluted blood plasma. Biosens. Bioelectron. 2010, 26(4):1656-1661.
23. Piliarik M., Homola J. Self-referencing SPR imaging for most demanding high-throughput screening applications. Sensor Actuat. B-Chem 2008, 134(2):353-355.
24. Raether H. Surface-plasmons on smooth and rough surfaces and on gratings. Springer Tr. Mod. Phys. 1988, 111:1-133.
25. Raynal F., Beuf A., Plaza F., Scott J., Carriere P., Cabrera M., Cloarec J.P., Souteyrand E. Towards better DNA chip hybridization using chaotic advection. Phys. Fluids 2007, 19:1.
26. Rohsenow W.M., Hartnett J.P. Handbook of Heat Transfer 1973, McGraw-Hill, New York.
27. Saviranta P., Okon R., Brinker A., Warashina M., Eppinger J., Geierstanger B.H. Evaluating sandwich immunoassays in microarray format in terms of the ambient analyte regime. Clin. Chem. 2004, 50(10):1907-1920.
28. Sheehan P.E., Whitman L.J. Detection limits for nanoscale biosensors. Nano Lett. 2005, 5(4):803-807.
29. Sipova H., Vrba D., Homola J. Analytical value of detecting an individual molecular binding event: the case of the surface plasmon resonance biosensor. Anal. Chem. 2012, 84(1):30-33.
30. Situma C., Hashimoto M., Soper S.A. Merging microfluidics with microarray-based bioassays. Biomol. Eng. 2006, 23(5):213-231.
31. Squires T.M., Messinger R.J., Manalis S.R. Making it stick: convection, reaction and diffusion in surface-based biosensors. Nat. Biotechnol. 2008, 26(4):417-426.
32. Stoughton R.B. Applications of DNA microarrays in biology. Annu. Rev. Biochem. 2005, 74:53-82.
33. Trevino V., Falciani F., Barrera-Saldana H.A. DNA microarrays: a powerful genomic tool for biomedical and clinical research. Mol. Med. 2007, 13(9-10):527-541.
34. Wu D., Song L.B., Chen K., Liu F. Modelling and hydrostatic analysis of contact printing microarrays by quill pins. Int. J. Mech. Sci. 2012, 54(1):206-212.
35. Wu Z.G., Nguyen N.T., Huang X.Y. Nonlinear diffusive mixing in microchannels: theory and experiments. J. Micromech. Microeng. 2004, 14(4):604-611.