메뉴 건너뛰기




Volumn 117, Issue 48, 2013, Pages 12946-12952

Molecular recognition of aromatic rings by flavin: Electrostatics and dispersion determine ring positioning above isoalloxazine

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC STACKING INTERACTIONS; EFFECTIVE FRAGMENT POTENTIAL METHODS; ELECTRONIC STRUCTURE CALCULATIONS; ELECTROSTATIC POTENTIALS; EQUILIBRIUM CONFIGURATION; MINIMUM-ENERGY STRUCTURES; MOLECULAR RECOGNITION PROPERTIES; ROTATIONAL DEGREE OF FREEDOM;

EID: 84890067171     PISSN: 10895639     EISSN: 15205215     Source Type: Journal    
DOI: 10.1021/jp407193c     Document Type: Article
Times cited : (6)

References (38)
  • 1
    • 34447500880 scopus 로고    scopus 로고
    • The Diverse Roles of Flavin Coenzymes: Nature's Most Versatile Thespians
    • Mansoorabadi, S. O.; Thibodeaux, C. J.; Liu, H. The Diverse Roles of Flavin Coenzymes: Nature's Most Versatile Thespians J. Org. Chem. 2007, 72, 6329-6342
    • (2007) J. Org. Chem. , vol.72 , pp. 6329-6342
    • Mansoorabadi, S.O.1    Thibodeaux, C.J.2    Liu, H.3
  • 3
    • 13844256579 scopus 로고    scopus 로고
    • Light-Driven Enzymatic Catalysis of DNA Repair: A Review of Recent Biophysical Studies on Photolyase
    • Weber, S. Light-Driven Enzymatic Catalysis of DNA Repair: A Review of Recent Biophysical Studies on Photolyase Biochim. Biophys. Acta 2005, 1707, 1-23
    • (2005) Biochim. Biophys. Acta , vol.1707 , pp. 1-23
    • Weber, S.1
  • 4
    • 0030795004 scopus 로고    scopus 로고
    • Investigation of Flavin-Containing DNA-Repair Model Compounds
    • Epple, R.; Wallenborn, E.; Carell, T. Investigation of Flavin-Containing DNA-Repair Model Compounds J. Am. Chem. Soc. 1997, 119, 7440-7451
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 7440-7451
    • Epple, R.1    Wallenborn, E.2    Carell, T.3
  • 5
    • 0347544990 scopus 로고
    • Mechanisms of Flavin Catalysis
    • Bruice, T. C. Mechanisms of Flavin Catalysis Acc. Chem. Res. 1980, 13, 256-262
    • (1980) Acc. Chem. Res. , vol.13 , pp. 256-262
    • Bruice, T.C.1
  • 7
    • 0029056202 scopus 로고
    • An Enzyme-Substrate Complex Involved in Bacterial Cell Wall Biosynthesis
    • Benson, T. E.; Filman, D. J.; Walsh, C. T.; Hogle, J. M. An Enzyme-Substrate Complex Involved in Bacterial Cell Wall Biosynthesis Nat. Struct. Biol. 1995, 2, 644-653
    • (1995) Nat. Struct. Biol. , vol.2 , pp. 644-653
    • Benson, T.E.1    Filman, D.J.2    Walsh, C.T.3    Hogle, J.M.4
  • 8
    • 0001209090 scopus 로고
    • Flavin Coenzymes: At the Crossroads of Biological Redox Chemistry
    • Walsh, C. Flavin Coenzymes: At the Crossroads of Biological Redox Chemistry Acc. Chem. Res. 1980, 13, 148-155
    • (1980) Acc. Chem. Res. , vol.13 , pp. 148-155
    • Walsh, C.1
  • 9
    • 0032475447 scopus 로고    scopus 로고
    • Modulation of Flavin Recognition and Redox Properties through Donor Atom-π Interactions
    • Breinlinger, E. C.; Keenan, C. J.; Rotello, V. M. Modulation of Flavin Recognition and Redox Properties through Donor Atom-π Interactions J. Am. Chem. Soc. 1998, 120, 8606-8609
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 8606-8609
    • Breinlinger, E.C.1    Keenan, C.J.2    Rotello, V.M.3
  • 10
    • 84876270580 scopus 로고    scopus 로고
    • Aromatic Stacking Interactions in Flavin Model Systems
    • Nandwana, V.; Samuel, I.; Cooke, G.; Rotello, V. M. Aromatic Stacking Interactions in Flavin Model Systems Acc. Chem. Res. 2012, 46, 1000-1009
    • (2012) Acc. Chem. Res. , vol.46 , pp. 1000-1009
    • Nandwana, V.1    Samuel, I.2    Cooke, G.3    Rotello, V.M.4
  • 11
    • 0036305947 scopus 로고    scopus 로고
    • Mechanism of Coenzyme Recognition and Binding Revealed by Crystal Structure Analysis of Ferredoxin-NADP+ Reductase Complexed with NADP+
    • Hermoso, J.; Mayoral, T.; Faro, M.; Gomez-Moreno, C.; Sanz-Aparicio, J.; Medina, M. Mechanism of Coenzyme Recognition and Binding Revealed by Crystal Structure Analysis of Ferredoxin-NADP+ Reductase Complexed with NADP+ J. Mol. Biol. 2002, 319, 1133-1142
    • (2002) J. Mol. Biol. , vol.319 , pp. 1133-1142
    • Hermoso, J.1    Mayoral, T.2    Faro, M.3    Gomez-Moreno, C.4    Sanz-Aparicio, J.5    Medina, M.6
  • 12
    • 33749335515 scopus 로고    scopus 로고
    • The Crystal Structure of l -Lactate Oxidase from Aerococcus viridans at 2.1 Anstrom Resolution Reveals the Mechanism of Strict Substrate Recognition
    • Umena, Y.; Yorita, K.; Matsuoka, T.; Kita, A.; Fukui, K.; Morimoto, Y. The Crystal Structure of l -Lactate Oxidase from Aerococcus viridans at 2.1 Anstrom Resolution Reveals the Mechanism of Strict Substrate Recognition Biochem. Biophys. Res. Commun. 2006, 350, 249-256
    • (2006) Biochem. Biophys. Res. Commun. , vol.350 , pp. 249-256
    • Umena, Y.1    Yorita, K.2    Matsuoka, T.3    Kita, A.4    Fukui, K.5    Morimoto, Y.6
  • 13
    • 0031035026 scopus 로고    scopus 로고
    • Model Systems for Flavoenzyme Activity: Modulation of Flavin Redox Potentials through π-Stacking Interactions
    • Breinlinger, E. C.; Rotello, V. M. Model Systems for Flavoenzyme Activity: Modulation of Flavin Redox Potentials through π-Stacking Interactions J. Am. Chem. Soc. 1997, 119, 1165-1166
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 1165-1166
    • Breinlinger, E.C.1    Rotello, V.M.2
  • 14
    • 0030810140 scopus 로고    scopus 로고
    • Electrochemical Control of Recognition Processes: A Three-Component Molecular Switch
    • Deans, R.; Niemz, A.; Breinlinger, E. C.; Rotello, V. M. Electrochemical Control of Recognition Processes: a Three-Component Molecular Switch J. Am. Chem. Soc. 1997, 119, 10863-10864
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 10863-10864
    • Deans, R.1    Niemz, A.2    Breinlinger, E.C.3    Rotello, V.M.4
  • 15
    • 0037063502 scopus 로고    scopus 로고
    • Estimates of the Ab Initio Limit for π-π Interactions: The Benzene Dimer
    • Sinnokrot, M. O.; Valeev, E. F.; Sherrill, C. D. Estimates of the Ab Initio Limit for π-π Interactions: The Benzene Dimer J. Am. Chem. Soc. 2002, 124, 10887-10893
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 10887-10893
    • Sinnokrot, M.O.1    Valeev, E.F.2    Sherrill, C.D.3
  • 16
    • 67949101937 scopus 로고    scopus 로고
    • Substituent Effects in Sandwich Configurations of Multiply Substituted Benzene Dimers Are Not Solely Governed by Electrostatic Control
    • Ringer, A. L.; Sherrill, C. D. Substituent Effects in Sandwich Configurations of Multiply Substituted Benzene Dimers Are Not Solely Governed by Electrostatic Control J. Am. Chem. Soc. 2009, 131, 4574-4575
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 4574-4575
    • Ringer, A.L.1    Sherrill, C.D.2
  • 17
    • 61749087076 scopus 로고    scopus 로고
    • Effects of Heteroatoms on Aromatic π-π Interactions: Benzene-Pyridine and Pyridine Dimer
    • Hohenstein, E. G.; Sherrill, C. D. Effects of Heteroatoms on Aromatic π-π Interactions: Benzene-Pyridine and Pyridine Dimer J. Phys. Chem. A 2009, 113, 878-886
    • (2009) J. Phys. Chem. A , vol.113 , pp. 878-886
    • Hohenstein, E.G.1    Sherrill, C.D.2
  • 18
    • 77949469085 scopus 로고    scopus 로고
    • Accurately Characterizing the π-π Interaction Energies of Indole-Benzene Complexes
    • Geng, Y.; Takatani, T.; Hohenstein, E. G.; Sherrill, C. D. Accurately Characterizing the π-π Interaction Energies of Indole-Benzene Complexes J. Phys. Chem. A 2010, 114, 3576-3582
    • (2010) J. Phys. Chem. A , vol.114 , pp. 3576-3582
    • Geng, Y.1    Takatani, T.2    Hohenstein, E.G.3    Sherrill, C.D.4
  • 19
    • 52049090322 scopus 로고    scopus 로고
    • Model Systems for Flavoenzyme Activity: Intramolecular Self-Assembly of a Flavin Derivative via Hydrogen Bonding and Aromatic Interactions
    • Caldwell, S. T.; Cooke, G.; Hewage, S. G.; Mabruk, S.; Rabani, G.; Rotello, V.; Smith, B. O.; Subramani, C.; Woisel, P. Model Systems for Flavoenzyme Activity: Intramolecular Self-Assembly of a Flavin Derivative via Hydrogen Bonding and Aromatic Interactions Chem. Commun. 2008, 4126-4128
    • (2008) Chem. Commun. , pp. 4126-4128
    • Caldwell, S.T.1    Cooke, G.2    Hewage, S.G.3    Mabruk, S.4    Rabani, G.5    Rotello, V.6    Smith, B.O.7    Subramani, C.8    Woisel, P.9
  • 20
  • 21
    • 0036140732 scopus 로고    scopus 로고
    • Structure of Human Monoamine Oxidase B, a Drug Target for the Treatment of Neurological Disorders
    • Binda, C.; Newton-Vinson, P.; Hubalek, F.; Edmondson, D. E.; Mattevi, A. Structure of Human Monoamine Oxidase B, a Drug Target for the Treatment of Neurological Disorders Nat. Struct. Biol. 2001, 9, 22-26
    • (2001) Nat. Struct. Biol. , vol.9 , pp. 22-26
    • Binda, C.1    Newton-Vinson, P.2    Hubalek, F.3    Edmondson, D.E.4    Mattevi, A.5
  • 23
    • 0035138053 scopus 로고    scopus 로고
    • The Effective Fragment Potential Method: A QM-Based MM Approach to Modeling Environmental Effects in Chemistry
    • Gordon, M. S.; Freitag, M. A.; Bandyopadhyay, P.; Jensen, J. H.; Kairys, V.; Stevens, W. J. The Effective Fragment Potential Method: A QM-Based MM Approach to Modeling Environmental Effects in Chemistry J. Phys. Chem. A 2001, 105, 293-307
    • (2001) J. Phys. Chem. A , vol.105 , pp. 293-307
    • Gordon, M.S.1    Freitag, M.A.2    Bandyopadhyay, P.3    Jensen, J.H.4    Kairys, V.5    Stevens, W.J.6
  • 24
    • 84865074490 scopus 로고    scopus 로고
    • Accurate Prediction of Noncovalent Interaction Energies with the Effective Fragment Potential Method: Comparison of Energy Components to Symmetry-Adapted Perturbation Theory for the S22 Test Set
    • Flick, J. C.; Kosenkov, D.; Hohenstein, E. G.; Sherrill, C. D.; Slipchenko, L. V. Accurate Prediction of Noncovalent Interaction Energies with the Effective Fragment Potential Method: Comparison of Energy Components to Symmetry-Adapted Perturbation Theory for the S22 Test Set J. Chem. Theory Comput. 2012, 8, 2835-2843
    • (2012) J. Chem. Theory Comput. , vol.8 , pp. 2835-2843
    • Flick, J.C.1    Kosenkov, D.2    Hohenstein, E.G.3    Sherrill, C.D.4    Slipchenko, L.V.5
  • 25
    • 79955851419 scopus 로고    scopus 로고
    • Benzene-Pyridine Interactions Predicted by the Effective Fragment Potential Method
    • Smith, Q. A.; Gordon, M. S.; Slipchenko, L. V. Benzene-Pyridine Interactions Predicted by the Effective Fragment Potential Method J. Phys. Chem. A 2011, 115, 4598-4609
    • (2011) J. Phys. Chem. A , vol.115 , pp. 4598-4609
    • Smith, Q.A.1    Gordon, M.S.2    Slipchenko, L.V.3
  • 26
    • 46349109795 scopus 로고    scopus 로고
    • Modeling π-π Interactions with the Effective Fragment Potential Method: The Benzene Dimer and Substituents
    • Smith, T.; Slipchenko, L. V.; Gordon, M. S. Modeling π-π Interactions with the Effective Fragment Potential Method: The Benzene Dimer and Substituents J. Phys. Chem. A 2008, 112, 5286-5294
    • (2008) J. Phys. Chem. A , vol.112 , pp. 5286-5294
    • Smith, T.1    Slipchenko, L.V.2    Gordon, M.S.3
  • 27
    • 78649830841 scopus 로고    scopus 로고
    • Noncovalent Interactions in Extended Systems Described by the Effective Fragment Potential Method: Theory and Application to Nucleobase Oligomers
    • Ghosh, D.; Kosenkov, D.; Vanovschi, V.; Williams, C. F.; Herbert, J. M.; Gordon, M. S.; Schmidt, M. W.; Slipchenko, L. V.; Krylov, A. I. Noncovalent Interactions in Extended Systems Described by the Effective Fragment Potential Method: Theory and Application to Nucleobase Oligomers J. Phys. Chem. A 2010, 114, 12739-12754
    • (2010) J. Phys. Chem. A , vol.114 , pp. 12739-12754
    • Ghosh, D.1    Kosenkov, D.2    Vanovschi, V.3    Williams, C.F.4    Herbert, J.M.5    Gordon, M.S.6    Schmidt, M.W.7    Slipchenko, L.V.8    Krylov, A.I.9
  • 28
    • 63849190874 scopus 로고    scopus 로고
    • Water-Benzene Interactions: An Effective Fragment Potential and Correlated Quantum Chemistry Study
    • Slipchenko, L. V.; Gordon, M. S. Water-Benzene Interactions: An Effective Fragment Potential and Correlated Quantum Chemistry Study J. Phys. Chem. A 2009, 113, 2092-2102
    • (2009) J. Phys. Chem. A , vol.113 , pp. 2092-2102
    • Slipchenko, L.V.1    Gordon, M.S.2
  • 29
    • 0001128874 scopus 로고    scopus 로고
    • A Study of Water Clusters Using the Effective Fragment Potential and Monte Carlo Simulated Annealing
    • Day, P. N.; Pachter, R.; Gordon, M. S.; Merrill, G. N. A Study of Water Clusters Using the Effective Fragment Potential and Monte Carlo Simulated Annealing J. Chem. Phys. 2000, 112, 2063-2073
    • (2000) J. Chem. Phys. , vol.112 , pp. 2063-2073
    • Day, P.N.1    Pachter, R.2    Gordon, M.S.3    Merrill, G.N.4
  • 30
    • 40549127108 scopus 로고    scopus 로고
    • Density Functionals with Broad Applicability in Chemistry
    • Zhao, Y.; Truhlar, D. G. Density Functionals with Broad Applicability in Chemistry Acc. Chem. Res. 2008, 41, 157-167
    • (2008) Acc. Chem. Res. , vol.41 , pp. 157-167
    • Zhao, Y.1    Truhlar, D.G.2
  • 31
    • 4143095330 scopus 로고
    • Electron Affinities of the First Row Atoms Revisited. Systematic Basis Sets and Wave Functions
    • Kendall, R. A.; Dunning, T. H., Jr.; Harrison, R. J. Electron Affinities of the First Row Atoms Revisited. Systematic Basis Sets and Wave Functions J. Chem. Phys. 1992, 96, 6796-6806
    • (1992) J. Chem. Phys. , vol.96 , pp. 6796-6806
    • Kendall, R.A.1    Dunning Jr., T.H.2    Harrison, R.J.3
  • 32
    • 84890021933 scopus 로고
    • The Calculation of Small Molecular Interactions by the Differences of Separate Total Energies: Some Procedures with Reduced Errors
    • Boys, S. F.; Bernardi, F. The Calculation of Small Molecular Interactions by the Differences of Separate Total Energies: Some Procedures with Reduced Errors Mol. Phys. 1970, 19, 553-566
    • (1970) Mol. Phys. , vol.19 , pp. 553-566
    • Boys, S.F.1    Bernardi, F.2
  • 35
    • 84890047241 scopus 로고    scopus 로고
    • version 9.2; Schrödinger, LLC: New York.
    • Maestro, version 9.2; Schrödinger, LLC: New York, 2011.
    • (2011) Maestro
  • 36
    • 50249106323 scopus 로고    scopus 로고
    • Substituent Effects in the Benzene Dimer Are Due to Direct Interactions of the Substituents with the Unsubstituted Benzene
    • Wheeler, S. E.; Houk, K. N. Substituent Effects in the Benzene Dimer Are Due to Direct Interactions of the Substituents with the Unsubstituted Benzene J. Am. Chem. Soc. 2008, 130, 10854-10855
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 10854-10855
    • Wheeler, S.E.1    Houk, K.N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.