메뉴 건너뛰기




Volumn 47, Issue 23, 2013, Pages 13621-13628

Probabilistic analysis showing that a combination of bacteroides and methanobrevibacter source tracking markers is effective for identifying waters contaminated by human fecal pollution

Author keywords

[No Author keywords available]

Indexed keywords

CONDITIONAL PROBABILITIES; CONTAMINATED WATER; DEGREE OF CERTAINTY; HUMAN FECAL POLLUTION; MICROBIAL SOURCE TRACKING; POTENTIAL INDICATORS; PRIOR PROBABILITY; PROBABILISTIC ANALYSIS;

EID: 84889856794     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es403753k     Document Type: Article
Times cited : (17)

References (42)
  • 1
    • 0034126848 scopus 로고    scopus 로고
    • Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
    • Bernhard, A. E.; Field, K. G. Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes Appl. Environ. Microbiol. 2000, 66 (4) 1587-1594
    • (2000) Appl. Environ. Microbiol. , vol.66 , Issue.4 , pp. 1587-1594
    • Bernhard, A.E.1    Field, K.G.2
  • 2
    • 0347928647 scopus 로고    scopus 로고
    • Molecular approaches to microbiological monitoring: Fecal source detection
    • Field, K. G.; Bernhard, A. E.; Brodeur, T. J. Molecular approaches to microbiological monitoring: Fecal source detection Environ. Monit. Assess. 2003, 81 (1-3) 313-326
    • (2003) Environ. Monit. Assess. , vol.81 , Issue.13 , pp. 313-326
    • Field, K.G.1    Bernhard, A.E.2    Brodeur, T.J.3
  • 3
    • 0033774937 scopus 로고    scopus 로고
    • A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
    • Bernhard, A. E.; Field, K. G. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA Appl. Environ. Microbiol. 2000, 66 (10) 4571-4574
    • (2000) Appl. Environ. Microbiol. , vol.66 , Issue.10 , pp. 4571-4574
    • Bernhard, A.E.1    Field, K.G.2
  • 5
    • 34247634968 scopus 로고    scopus 로고
    • Identification of bacterial DNA markers for the detection of human fecal pollution in water
    • Shanks, O. C.; Domingo, J. W.; Lu, J.; Kelty, C. A.; Graham, J. E. Identification of bacterial DNA markers for the detection of human fecal pollution in water Appl. Environ. Microbiol. 2007, 73 (8) 2416-2422
    • (2007) Appl. Environ. Microbiol. , vol.73 , Issue.8 , pp. 2416-2422
    • Shanks, O.C.1    Domingo, J.W.2    Lu, J.3    Kelty, C.A.4    Graham, J.E.5
  • 7
    • 0021934090 scopus 로고
    • Survival and detection of Bacteroides spp., prospective indicator bacteria
    • Fiksdal, L.; Maki, J. S.; LaCroix, S. J.; Staley, J. T. Survival and detection of Bacteroides spp., prospective indicator bacteria Appl. Environ. Microbiol. 1985, 49 (1) 148-150
    • (1985) Appl. Environ. Microbiol. , vol.49 , Issue.1 , pp. 148-150
    • Fiksdal, L.1    Maki, J.S.2    Lacroix, S.J.3    Staley, J.T.4
  • 8
    • 0031714984 scopus 로고    scopus 로고
    • Persistence of PCR-detectable Bacteroides distasonis from human feces in river water
    • Kreader, C. A. Persistence of PCR-detectable Bacteroides distasonis from human feces in river water Appl. Environ. Microbiol. 1998, 64 (10) 4103-4105
    • (1998) Appl. Environ. Microbiol. , vol.64 , Issue.10 , pp. 4103-4105
    • Kreader, C.A.1
  • 9
    • 84866149730 scopus 로고    scopus 로고
    • Consistency in the host specificity and host sensitivity of the Bacteroides HF183 marker for sewage pollution tracking
    • Ahmed, W.; Masters, N.; Toze, S. Consistency in the host specificity and host sensitivity of the Bacteroides HF183 marker for sewage pollution tracking Lett. Appl. Microbiol. 2012, 55 (4) 283-289
    • (2012) Lett. Appl. Microbiol. , vol.55 , Issue.4 , pp. 283-289
    • Ahmed, W.1    Masters, N.2    Toze, S.3
  • 12
    • 33745455754 scopus 로고    scopus 로고
    • Detection of the nif H gene of Methanobrevibacter smithii: A potential tool to identify sewage pollution in recreational waters
    • Ufnar, J. A.; Wang, S. Y.; Christiansen, J. M.; Yampara-Iquise, H.; Carson, C. A.; Ellender, R. D. Detection of the nif H gene of Methanobrevibacter smithii: A potential tool to identify sewage pollution in recreational waters J. Appl. Microbiol. 2006, 101 (1) 44-52
    • (2006) J. Appl. Microbiol. , vol.101 , Issue.1 , pp. 44-52
    • Ufnar, J.A.1    Wang, S.Y.2    Christiansen, J.M.3    Yampara-Iquise, H.4    Carson, C.A.5    Ellender, R.D.6
  • 13
    • 78449237643 scopus 로고    scopus 로고
    • A real-time qPCR assay for the detection of the nif H gene of Methanobrevibacter smithii, a potential indicator of sewage pollution
    • Johnston, C.; Ufnar, J. A.; Griffith, J. F.; Gooch, J. A.; Stewart, J. R. A real-time qPCR assay for the detection of the nif H gene of Methanobrevibacter smithii, a potential indicator of sewage pollution J. Appl. Microbiol. 2010, 109 (6) 1946-1956
    • (2010) J. Appl. Microbiol. , vol.109 , Issue.6 , pp. 1946-1956
    • Johnston, C.1    Ufnar, J.A.2    Griffith, J.F.3    Gooch, J.A.4    Stewart, J.R.5
  • 14
    • 0015033242 scopus 로고
    • Factors influencing pulmonary methane excretion in man. An indirect method of studying the in situ metabolism of the methane-producing colonic bacteria
    • Bond, J. H., Jr.; Engel, R. R.; Levitt, M. D. Factors influencing pulmonary methane excretion in man. An indirect method of studying the in situ metabolism of the methane-producing colonic bacteria J. Exp. Med. 1971, 133 (3) 572-588
    • (1971) J. Exp. Med. , vol.133 , Issue.3 , pp. 572-588
    • Bond, Jr.J.H.1    Engel, R.R.2    Levitt, M.D.3
  • 15
    • 0031923090 scopus 로고    scopus 로고
    • Phylogenetic analysis of Methanobrevibacter isolated from feces of humans and other animals
    • Lin, C.; Miller, T. L. Phylogenetic analysis of Methanobrevibacter isolated from feces of humans and other animals Arch. Microbiol. 1998, 169, 397-403
    • (1998) Arch. Microbiol. , vol.169 , pp. 397-403
    • Lin, C.1    Miller, T.L.2
  • 16
    • 0020031173 scopus 로고
    • Enumeration of Methanobrevibacter smithii in human feces
    • Miller, T. L.; Wolin, M. J. Enumeration of Methanobrevibacter smithii in human feces Arch. Microbiol. 1982, 131 (1) 14-18
    • (1982) Arch. Microbiol. , vol.131 , Issue.1 , pp. 14-18
    • Miller, T.L.1    Wolin, M.J.2
  • 18
    • 11444255662 scopus 로고
    • Genus II. Methanobrevibacter
    • Williams & Wilkins: Baltimore, MD - 2183
    • Miller, T. Genus II. Methanobrevibacter. In Bergey's Manual of Systematic Bacteriology; Williams & Wilkins: Baltimore, MD, 1984; Vol. 1, pp 2178-2183.
    • (1984) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 2178
    • Miller, T.1
  • 20
    • 84867141690 scopus 로고    scopus 로고
    • HuBac and nif H source tracking markers display a relationship to land use but not rainfall
    • Gentry-Shields, J.; Rowny, J. G.; Stewart, J. R. HuBac and nif H source tracking markers display a relationship to land use but not rainfall Water Res. 2012, 46 (18) 6163-6174
    • (2012) Water Res. , vol.46 , Issue.18 , pp. 6163-6174
    • Gentry-Shields, J.1    Rowny, J.G.2    Stewart, J.R.3
  • 21
    • 84855329239 scopus 로고    scopus 로고
    • Evaluation of the nif H gene marker of Methanobrevibacter smithii for the detection of sewage pollution in environmental waters in Southeast Queensland, Australia
    • Ahmed, W.; Sidhu, J. P.; Toze, S. Evaluation of the nif H gene marker of Methanobrevibacter smithii for the detection of sewage pollution in environmental waters in Southeast Queensland, Australia Environ. Sci. Technol. 2012, 46 (1) 543-550
    • (2012) Environ. Sci. Technol. , vol.46 , Issue.1 , pp. 543-550
    • Ahmed, W.1    Sidhu, J.P.2    Toze, S.3
  • 22
    • 34547597968 scopus 로고    scopus 로고
    • 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: A Bayesian approach
    • Kildare, B. J.; Leutenegger, C. M.; McSwain, B. S.; Bambic, D. G.; Rajal, V. B.; Wuertz, S. 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: A Bayesian approach Water Res. 2007, 41 (16) 3701-3715
    • (2007) Water Res. , vol.41 , Issue.16 , pp. 3701-3715
    • Kildare, B.J.1    Leutenegger, C.M.2    McSwain, B.S.3    Bambic, D.G.4    Rajal, V.B.5    Wuertz, S.6
  • 23
    • 77957019131 scopus 로고    scopus 로고
    • Estimating true human and animal host source contribution in quantitative microbial source tracking using the Monte Carlo method
    • Wang, D.; Silkie, S. S.; Nelson, K. L.; Wuertz, S. Estimating true human and animal host source contribution in quantitative microbial source tracking using the Monte Carlo method Water Res. 2010, 44 (16) 4760-4775
    • (2010) Water Res. , vol.44 , Issue.16 , pp. 4760-4775
    • Wang, D.1    Silkie, S.S.2    Nelson, K.L.3    Wuertz, S.4
  • 24
    • 34548598402 scopus 로고    scopus 로고
    • Incidence of the enterococcal surface protein (esp) gene in human and animal fecal sources
    • Whitman, R. L.; Przybyla-Kelly, K.; Shively, D. A.; Byappanahalli, M. N. Incidence of the enterococcal surface protein (esp) gene in human and animal fecal sources Environ. Sci. Technol. 2007, 41 (17) 6090-6095
    • (2007) Environ. Sci. Technol. , vol.41 , Issue.17 , pp. 6090-6095
    • Whitman, R.L.1    Przybyla-Kelly, K.2    Shively, D.A.3    Byappanahalli, M.N.4
  • 25
    • 11244270375 scopus 로고    scopus 로고
    • Potential use of a host associated molecular marker in Enterococcus faecium as an index of human fecal pollution
    • Scott, T. M.; Jenkins, T. M.; Lukasik, J.; Rose, J. B. Potential use of a host associated molecular marker in Enterococcus faecium as an index of human fecal pollution Environ. Sci. Technol. 2005, 39 (1) 283-287
    • (2005) Environ. Sci. Technol. , vol.39 , Issue.1 , pp. 283-287
    • Scott, T.M.1    Jenkins, T.M.2    Lukasik, J.3    Rose, J.B.4
  • 26
    • 12744260019 scopus 로고    scopus 로고
    • Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic marker with real-time PCR for assessment of human faecal pollution in freshwater
    • Seurinck, S.; Defoirdt, T.; Verstraete, W.; Siciliano, S. D. Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic marker with real-time PCR for assessment of human faecal pollution in freshwater Environ. Microbiol. 2005, 7 (2) 249-259
    • (2005) Environ. Microbiol. , vol.7 , Issue.2 , pp. 249-259
    • Seurinck, S.1    Defoirdt, T.2    Verstraete, W.3    Siciliano, S.D.4
  • 27
    • 34247622189 scopus 로고    scopus 로고
    • Performance, design, and analysis in microbial source tracking studies
    • Stoeckel, D. M.; Harwood, V. J. Performance, design, and analysis in microbial source tracking studies Appl. Environ. Microbiol. 2007, 73 (8) 2405-2415
    • (2007) Appl. Environ. Microbiol. , vol.73 , Issue.8 , pp. 2405-2415
    • Stoeckel, D.M.1    Harwood, V.J.2
  • 30
    • 35948986366 scopus 로고    scopus 로고
    • Methanobrevibacter ruminantium as an indicator of domesticated-ruminant fecal pollution in surface waters
    • Ufnar, J. A.; Wang, S. Y.; Ufnar, D. F.; Ellender, R. D. Methanobrevibacter ruminantium as an indicator of domesticated-ruminant fecal pollution in surface waters Appl. Environ. Microbiol. 2007, 73 (21) 7118-7121
    • (2007) Appl. Environ. Microbiol. , vol.73 , Issue.21 , pp. 7118-7121
    • Ufnar, J.A.1    Wang, S.Y.2    Ufnar, D.F.3    Ellender, R.D.4
  • 31
    • 55349142110 scopus 로고    scopus 로고
    • Environmental occurrence of the enterococcal surface protein (esp) gene is an unreliable indicator of human fecal contamination
    • Byappanahalli, M. N.; Przybyla-Kelly, K.; Shively, D. A.; Whitman, R. L. Environmental occurrence of the enterococcal surface protein (esp) gene is an unreliable indicator of human fecal contamination Environ. Sci. Technol. 2008, 42 (21) 8014-8020
    • (2008) Environ. Sci. Technol. , vol.42 , Issue.21 , pp. 8014-8020
    • Byappanahalli, M.N.1    Przybyla-Kelly, K.2    Shively, D.A.3    Whitman, R.L.4
  • 33
    • 77956550816 scopus 로고    scopus 로고
    • Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR
    • Haugland, R. A.; Varma, M.; Sivaganesan, M.; Kelty, C.; Peed, L.; Shanks, O. C. Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR Syst. Appl. Microbiol. 2012, 33 (6) 348-357
    • (2012) Syst. Appl. Microbiol. , vol.33 , Issue.6 , pp. 348-357
    • Haugland, R.A.1    Varma, M.2    Sivaganesan, M.3    Kelty, C.4    Peed, L.5    Shanks, O.C.6
  • 35
    • 0037236059 scopus 로고    scopus 로고
    • Putative temporal variability of Escherichia coli ribotypes from yearling steers
    • Jenkins, M. B.; Hartel, P. G.; Olexa, T. J.; Stuedemann, J. A. Putative temporal variability of Escherichia coli ribotypes from yearling steers J. Environ. Qual. 2003, 32 (1) 305-309
    • (2003) J. Environ. Qual. , vol.32 , Issue.1 , pp. 305-309
    • Jenkins, M.B.1    Hartel, P.G.2    Olexa, T.J.3    Stuedemann, J.A.4
  • 36
    • 0037313120 scopus 로고    scopus 로고
    • Geographical variation in ribotype profiles of Escherichia coli isolates from humans, swine, poultry, beef, and dairy cattle in Florida
    • Scott, T. M.; Parveen, S.; Portier, K. M.; Rose, J. B.; Tamplin, M. L.; Farrah, S. R.; Koo, A.; Lukasik, J. Geographical variation in ribotype profiles of Escherichia coli isolates from humans, swine, poultry, beef, and dairy cattle in Florida Appl. Environ. Microbiol. 2003, 69 (2) 1089-1092
    • (2003) Appl. Environ. Microbiol. , vol.69 , Issue.2 , pp. 1089-1092
    • Scott, T.M.1    Parveen, S.2    Portier, K.M.3    Rose, J.B.4    Tamplin, M.L.5    Farrah, S.R.6    Koo, A.7    Lukasik, J.8
  • 37
    • 84881226662 scopus 로고    scopus 로고
    • High temporal variability in commensal Escherichia coli strain communities of a herbivorous marsupial
    • Blyton, M. D. J.; Banks, S. C.; Peakall, R.; Gordon, D. M. High temporal variability in commensal Escherichia coli strain communities of a herbivorous marsupial Environ. Microbiol. 2013, 15 (8) 2162-2172
    • (2013) Environ. Microbiol. , vol.15 , Issue.8 , pp. 2162-2172
    • Blyton, M.D.J.1    Banks, S.C.2    Peakall, R.3    Gordon, D.M.4
  • 38
    • 33645127191 scopus 로고    scopus 로고
    • Geographical variation in antibiotic resistance profiles of Escherichia coli isolated from swine, poultry, beef and dairy cattle farm water retention ponds in Florida
    • Parveen, S.; Lukasik, J.; Scott, T. M.; Tamplin, M. L.; Portier, K. M.; Sheperd, S.; Braun, K.; Farrah, S. R. Geographical variation in antibiotic resistance profiles of Escherichia coli isolated from swine, poultry, beef and dairy cattle farm water retention ponds in Florida J. Appl. Microbiol. 2006, 100 (1) 50-57
    • (2006) J. Appl. Microbiol. , vol.100 , Issue.1 , pp. 50-57
    • Parveen, S.1    Lukasik, J.2    Scott, T.M.3    Tamplin, M.L.4    Portier, K.M.5    Sheperd, S.6    Braun, K.7    Farrah, S.R.8
  • 39
    • 38349138542 scopus 로고    scopus 로고
    • Evaluation of Bacteroides markers for the detection of human faecal pollution
    • Ahmed, W.; Stewart, J.; Powell, D.; Gardner, T. Evaluation of Bacteroides markers for the detection of human faecal pollution Lett. Appl. Microbiol. 2008, 46 (2) 237-242
    • (2008) Lett. Appl. Microbiol. , vol.46 , Issue.2 , pp. 237-242
    • Ahmed, W.1    Stewart, J.2    Powell, D.3    Gardner, T.4
  • 42
    • 34548204320 scopus 로고    scopus 로고
    • Development of a swine-specific fecal pollution marker based on host differences in methanogen mcr A genes
    • Ufnar, J. A.; Ufnar, D. F.; Wang, S. Y.; Ellender, R. D. Development of a swine-specific fecal pollution marker based on host differences in methanogen mcr A genes Appl. Environ. Microbiol. 2007, 73 (16) 5209-5217
    • (2007) Appl. Environ. Microbiol. , vol.73 , Issue.16 , pp. 5209-5217
    • Ufnar, J.A.1    Ufnar, D.F.2    Wang, S.Y.3    Ellender, R.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.