Understanding salmonid biology from the Atlantic salmon genome

Genome

Volumn 56, Issue 10, 2013, Pages 548-550

  Davidson, William S ^a  

^a SIMON FRASER UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ATLANTIC SALMON; CLASSIFICATION; FEMALE; GENE DUPLICATION; GENETICS; GENOME; GENOMICS; GROWTH, DEVELOPMENT AND AGING; MALE; PHYLOGENY; PHYSIOLOGY; REVIEW; SALMONID; SEX DETERMINATION PROCESS;

ANIMALS; FEMALE; GENE DUPLICATION; GENOME; GENOMICS; MALE; PHYLOGENY; SALMO SALAR; SALMONIDAE; SEX DETERMINATION PROCESSES;

EID: 84889801153     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/gen-2013-0163     Document Type: Review

References (19)

1. Allendorf, F.W., and Thorgaard, G.H. 1984. Tetraploidy and the evolution of salmonid fishes. In Evolutionary genetics of fishes. Edited by B.J. Turner. Plenum Press, New York. pp. 1-46.
2. Artieri C.G. Mitchell L.A. Ng S.H.S. Parisotto S.E. Danzmann R.G. Hoyheim B. et al 2006. Identification of the sex-determining locus of Atlantic salmon (Salmo salar) on chromosome 2. Cytogenet. Genome Res. 112: 152-159. 10.1159/000087528. 16276105. (Pubitemid 41579470)
3. Brenna-Hansen S. Li J. Kent M.P. Boulding E.G. Dominik S. Davidson W.S. Lien S. 2012. Chromosomal differences between European and North American Atlantic salmon discovered by linkage mapping and supported by fluorescence in situ hybridization analysis. BMC Genomics, 13: 432. 10.1186/1471-2164-13-432. 22928605.
4. Danzmann R.G. Davidson E.A. Ferguson M.M. Gharbi K. Koop B.F. Hoyheim B. et al 2008. Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes Rainbow trout and Atlantic salmon. BMC Genomics, 9: 557. 10.1186/1471-2164-9-557. 19032764.
5. Davidson W.S. Huang T.-K. Fujiki K. von Schalburg K.R. Koop B.F. 2009. The sex determining loci and sex chromosomes in the family Salmonidae. Sex. Dev. 3: 78-87. 10.1159/000223073. 19684453.
6. Davidson W.S. Koop B.F. Jones S.J.M. Iturra P. Vidal R. Maass A. et al 2010. Sequencing the genome of the Atlantic salmon (Salmo salar). Genome Biol. 11: 403. 20887641.
7. de Boer J.G. Yazawa R. Davidson W.S. Koop B.F. 2007. Bursts and horiozontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids. BMC Genomics, 8: 422. 10.1186/1471-2164-8-422. 18021408.
8. Eisbrenner, W.D., Botwright, N., Cook, M., Davidson, E.A., Dominik, S., Elliott, N.G., et al. 2013. Evidence for multiple sex-determining loci in Tasmanian Atlantic salmon (Salmo salar). Heredity. [Online ahead of print.] 10.1038/hdy.2013.55.
9. Lien S. Gidskehaug L. Moen T. Hayes B.J. Berg P.R. Davidson W.S. et al 2011. A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns. BMC Genomics, 12: 615. 10.1186/1471-2164-12-615. 22182215.
10. Manel S. Schwartz M.K. Luikart G. Taberlet P. 2003. Landscape genetics: combining landscape ecology and population genetics. Trends Ecol. Evol. 18: 189-197. 10.1016/S0169-5347(03)00008-9. (Pubitemid 36345738)
11. Nelson, J.S. 2006. Fishes of the world. 4th ed. John Wiley and Sons, New York.
12. Ng S.H.S. Artieri C.G. Bosdet I.E. Chiu R. Danzmann R. Davidson W.S. et al 2005. A physical map of the genome of Atlantic salmon (Salmo salar). Genomics, 86: 396-404. 10.1016/j.ygeno.2005.06.001. 16026963. (Pubitemid 43293152)
13. Phillips R.B. Keatley K.A. Morasch M.R. Ventura A.B. Lubieniecki K.P. Koop B.F. et al 2009. Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss). BMC Genetics, 10: 46. 10.1186/1471-2156-10-46.
14. Rajasingh H. Våge D.I. Pavey S.A. Omholt S.W. 2007. Why are salmonids pink? Can. J. Fish. Aquat. Sci. 64 (11): 1614-1627. 10.1139/f07-119.
15. Rise M.L., von Schalburg K.R. Brown G.D. Mawer M.A. Devlin R.H. Kuipers N. et al 2004. Development and application of a salmonid EST database and cDNA microarray: data mining and interspecific hybridization characteristics. Genome Res. 14: 478-490. 10.1101/gr.1687304. 14962987. (Pubitemid 38380403)
16. Smith J.J. Kuraku S. Holt C. Sauka-Spengler T. Jiang N. Campbell M.S. et al 2013. Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution. Nat. Genet. 45: 415-421. 10.1038/ng.2568. 23435085.
17. Thorgaard G.H. Bailey G.S. Williams D. Buhler D.R. Kaattari S.L. Ristow S.S. et al 2002. Status and opportunities for genomics research with rainbow trout. Comp. Biochem. Physiol. B Biochem. Mol. Biol. 133: 609-646. 10.1016/S1096-4959(02)00167-7. 12470823. (Pubitemid 35441085)
18. Yano A. Guyomard R. Nicol B. Jouanno E. Quillet E. Klopp C. et al 2012. An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss. Curr. Biol. 22: 1423-1428. 10.1016/j.cub.2012.05. 045. 22197242.
19. Yano A. Nicol B. Jouanno E. Quillet E. Fostier A. Guyomard R. Guigen Y. 2013. The sexually dimorphic on the Y-chromosome gene (sdY) is a conserved male-specific Y-chromosome sequence in many salmonids. Evol. Appl. 6: 486-496. 10.1111/eva.12032. 23745140.