Identification of the sex-determining locus of Atlantic salmon (Salmo salar) on chromosome 2

Cytogenetic and Genome Research

Volumn 112, Issue 1-2, 2006, Pages 152-159

  Artieri, C G ^a   Mitchell, L A ^a   Ng, S H S ^a   Parisotto, S E ^a   Danzmann, R G ^b   Hoyheim, B ^c   Phillips, R B ^d   Morasch, M ^d   Koop, B F ^e   Davidson, W S ^a  

^a SIMON FRASER UNIVERSITY   (Canada)

^b UNIVERSITY OF GUELPH   (Canada)

^c NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^d WASHINGTON STATE UNIVERSITY   (United States)

^e UNIVERSITY OF VICTORIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ARTICLE; CHROMOSOME 2; CONTROLLED STUDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE IDENTIFICATION; GENE LOCUS; GENE MAPPING; GENETIC LINKAGE; KARYOTYPE; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SALMON; SEX DETERMINATION; SEX LINKAGE;

ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; DNA PRIMERS; FEMALE; IN SITU HYBRIDIZATION, FLUORESCENCE; MALE; MICROSATELLITE REPEATS; PROTEINS; SALMO SALAR; SEX DETERMINATION (GENETICS);

ANIMALIA; BACTERIA (MICROORGANISMS); SALMO SALAR;

EID: 27644506249     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000087528     Document Type: Article

References (44)

1. Allendorf FW, Thorgaard GH: Tetraploidy and the evolution of salmonid fishes, in Turner BJ (ed): Evolutionary Genetics of Fishes, pp 1-46 (Plenum Press, New York 1984).
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 215:403-410 (1990).
3. Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, et al: Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297:1301-1310 (2002).
4. Baroiller JF, Guigen Y: Endocrine and environmental aspects of sex-differentiation in gonochoristic fish. EXS 91:117-123 (2001).
5. Beye M, Hasselmann M, Fondrk MK, Page RE, Omholt SW: The gene csd is the primary signal for sexual development in the honeybee and encodes an SR-type protein. Cell 114:419-429 (2003).
6. Chevassus B: Modification du phenotype sexuel et du mode de reproduction chez les poisons salmonidés: Inversion sexuelle, gynogénè se, hybridation interspécifique et polypoïdisation. PhD dissertation, Université de Paris XI, Orsay, France (1988).
7. Devlin RH, Nagahama Y: Sex determination and sex differentiation in fish: an overview of genetic, physiological, and environmental influences. Aquaculture 208:191-364 (2002).
8. Devlin RH, Biagi CA, Smailus DE: Genetic mapping of Y chromosomal DNA markers in Pacific salmon. Genetica 111:43-58 (2001).
9. Ewing B, Hillier L, Wendl MC, Green P: Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8:175-185 (1998).
10. Fjell CD, Bosdet I, Schein JE, Jones SJ, Marra MA: Internet Contig Explorer (iCE) - a tool for visualizing clone fingerprint maps. Genome Res 13:1244-1249 (2003).
11. Forbes SH, Knudsen KL, North TW, Allendorf FW: One of two growth hormone genes in coho salmon is sex-linked. Proc Natl Acad Sci USA 91:1628-1631 (1994).
12. Gharbi K: Construction d'une carte génétique partielle du génome tétraploide de la truite commune (Salmo trutta). PhD dissertation, Institut National Agronomique Paris-Grignon, Paris, France (2001).
13. Gilbey J, Verspoor E, McLay A, Houlihan D: A microsatellite linkage map for Atlantic salmon (Salmo solar). Anim Genet 35:98-105 (2004).
14. Iturra P, Lam N, de la Fuente M, Vergara N, Medrano JF: Characterization of sex chromosomes in rainbow trout and coho salmon using fluorescence in situ hybridization (FISH). Genetica 111:125-131 (2001).
15. Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, et al: Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431:946-957 (2004).
16. Johnstone R, Simpson TH, Youngson AF, Whitehead C: Sex reversal in salmonid culture. Part II. The progeny of sex reversed rainbow trout. Aquaculture 18:13-19 (1979).
17. Kondo M, Nanda I, Hornung U, Asakawa S, Shimizu N, Mitani H, et al: Absence of the candidate male sex-determining gene dmrt1b(Y) of medaka from other fish species. Curr Biol 13:416-420 (2003).
18. Lee BY, Penman DJ, Kocher TD: Identification of a sex-determining region in Nile tilapia (Oreochromis niloticus) using bulked segregant analysis. Anim Genet 34:379-383 (2003).
19. Lee BY, Hulata G, Kocher TD: Two unlinked loci controlling the sex of blue tilapia (Oreochromis aureus). Heredity 92:543-549 (2004).
20. Matsuda M, Nagahama Y, Shinomiya A, Sato T, Matsuda C, Kobayashi T, et al: DMY is a Y-specific DM-domain gene required for male development in the medaka fish. Nature 417:559-563 (2002).
21. Matsuda M, Sato T, Toyazaki Y, Nagahama Y, Hamaguchi S, Sakaizumi M: Oryzias curvinotus has DMY, a gene that is required for male development in the medaka, O. latipes. Zool Sci 20:159-161 (2003).
22. McGowan C, Davidson WS: The RAPD technique fails to detect a male-specific genetic marker in Atlantic salmon. J Fish Biol 53:1134-1136 (1998).
23. Moen T, Hoyheim B, Munck H, Gomez-Raya L: A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Anim Genet 35:81-92 (2004).
24. Nanda I, Kondo M, Hornung U, Asakawa S, Winkler C, Shimizu A, et al: A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes. Proc Natl Acad Sci USA 99: 11778-11783 (2002).
25. Nichols KM, Young WP, Danzmann RG, Robison BD, Rexroad C, Noakes M, et al: A consolidated linkage map for rainbow trout (Oncorhynchus mykiss). Anim Genet 34:102-115 (2003).
26. Onozato H: Androgenesis in masu salmon. Physiol Ecol Japan Spec 1:543 (1989).
27. Peichel CL, Ross JA, Matson CK, Dickson M, Grimwood J, Schmutz J, et al: The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome. Curr Biol 14:1416-1424 (2004).
28. Phillips RB, Ráb P: Chromosome evolution in the Salmonidae (Pisces): An update. Biol Rev 76:1-25 (2001).
29. Phillips RB, Reed KM: Localization of repetitive DNAs to zebrafish chromosomes using multi-color fluorescence in situ hybridization. Chromosome Res 8:27-35 (2000).
30. Phillips RB, Konkol NR, Reed KM, Stein JD: Chromosome painting supports lack of homology among sex chromosomes in Oncorhynchus, Salmo and Salvelinus (Salmonidae). Genetica 111:119-123 (2001).
31. Phillips RB, Morasch MR, Park LK, Naish KA, Devlin RH: Identification of the sex chromosome pair in coho salmon (Oncorhynchus kisutch): lack of conservation of the sex linkage group with Chinook salmon (Oncorhynchus tshawytscha). Cytogenet Genome Res 111:166-170 (2005).
32. 3 chromosome in lake trout, Salvelinus namaycush. Cytogenet Cell Genet 70:104-107 (1995).
33. Reed KM, Bohlander SK, Phillips RB: Microdissection of the Y chromosome and fluorescence in situ hybridization analysis of the sex chromosomes of lake trout, Salvelinus namaycush. Chromosome Res 3:221-226 (1995).
34. Sakamoto T, Danzmann RG, Gharbi K, Howard P, Ozaki A, Khoo SK, et al: A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155:1331-1345 (2000).
35. Sambrook J, Fritsch EF, Maniatis T: Molecular Cloning: A Laboratory Manual, 2nd Ed. (Cold Spring Harbor Laboratory Press, New York 1989).
36. Schein JE, Kucaba TA, Sekhon M, Smailus D, Waterston RH, Marra MA: High-throughput BAC fingerprinting, in Zhao S, Stodolsky M (eds): Methods in Molecular Biology. Bacterial Artificial Chromosomes: Library Construction, Physical Mapping and Sequencing, pp 143-156 (Humana Press Inc., Totawa 2004).
37. Soderlund C, Longden I, Mott R: FPC: a system for building contigs from restriction fingerprinted clones. Comput Appl Biosci 13:523-535 (1997).
38. Stein J, Phillips RB, Devlin RH: Identification of the Y chromosome in chinook salmon (Oncorhynchus tshawytscha). Cytogenet Cell Genet 92:108-110 (2001).
39. Thorgaard GH: Heteromorphic sex chromosomes in male rainbow trout. Science 196:900-902 (1977).
40. Thorgaard GH: Chromosomal differences among rainbow trout populations. Copeia 3:650-662 (1983).
41. Thorsen J, Zhu B, Frengen E, Osoegawa K, de Jong PJ, Koop BF, Davidson WS, Hoyheim B: A highly redundant BAC library of Atlantic salmon (Salmo salar): an important tool for salmon projects. BMC Genomics 6:50 (2005).
42. Wallrath LL: Unfolding the mysteries of heterochromatin. Curr Opin Genet Dev 8:147-153 (1998).
43. Woram RA, Gharbi K, Sakamoto T, Hoyheim B, Holm LE, Naish K, et al: Comparative genome analysis of the primary sex-determining locus in salmonid fishes. Genome Res 13:272-280 (2003).
44. Woram RA, McGowan C, Stout JA, Gharbi K, Ferguson MM, Hoyheim B, et al: A genetic linkage map for Arctic char (Salvelinus alpinus): evidence for higher recombination rates and segregation distortion in hybrid versus pure strain mapping parents. Genome 47:304-315 (2004).