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Volumn 4, Issue 12, 2013, Pages 1101-1110

Factors affecting species delimitations with the GMYC model: Insights from a butterfly survey

Author keywords

Cryptic species; DNA barcoding; Generalized mixed Yule coalescent model; Lepidoptera; Phylogenetic community ecology; Phylogenetic systematics; Sampling strategy; Species delimitation

Indexed keywords


EID: 84889652303     PISSN: None     EISSN: 2041210X     Source Type: Journal    
DOI: 10.1111/2041-210X.12107     Document Type: Article
Times cited : (284)

References (46)
  • 2
    • 67649094492 scopus 로고    scopus 로고
    • Inferring evolutionary significant units of bacterial diversity from broad environmental surveys of single-locus data
    • Barraclough, T.G., Hughes, M., Ashford-Hodges, N. & Fujisawa, T. (2009) Inferring evolutionary significant units of bacterial diversity from broad environmental surveys of single-locus data. Biology Letters, 5, 425-428.
    • (2009) Biology Letters , vol.5 , pp. 425-428
    • Barraclough, T.G.1    Hughes, M.2    Ashford-Hodges, N.3    Fujisawa, T.4
  • 5
    • 83655184683 scopus 로고    scopus 로고
    • Species identification in the taxonomically neglected, highly diverse, neotropical parasitoid wasp genus Notiospathius (Braconidae: Doryctinae) based on an integrative molecular and morphological approach
    • Ceccarelli, F.S., Sharkey, M.J. & Zaldívar-Riverón, A. (2012) Species identification in the taxonomically neglected, highly diverse, neotropical parasitoid wasp genus Notiospathius (Braconidae: Doryctinae) based on an integrative molecular and morphological approach. Molecular Phylogenetics and Evolution, 62, 485-495.
    • (2012) Molecular Phylogenetics and Evolution , vol.62 , pp. 485-495
    • Ceccarelli, F.S.1    Sharkey, M.J.2    Zaldívar-Riverón, A.3
  • 6
    • 51549089796 scopus 로고    scopus 로고
    • A genealogical approach to quantifying lineage divergence
    • Cummings, M.P., Neel, M.C. & Shaw, K.L. (2008) A genealogical approach to quantifying lineage divergence. Evolution, 62, 2411-2422.
    • (2008) Evolution , vol.62 , pp. 2411-2422
    • Cummings, M.P.1    Neel, M.C.2    Shaw, K.L.3
  • 7
    • 77956115325 scopus 로고    scopus 로고
    • Speciation in Mediterranean refugia and post-glacial expansion of Zerynthia polyxena (Lepidoptera, Papilionidae)
    • Dapporto, L. (2010) Speciation in Mediterranean refugia and post-glacial expansion of Zerynthia polyxena (Lepidoptera, Papilionidae). Journal of Zoological Systematics and Evolutionary Research, 48, 229-237.
    • (2010) Journal of Zoological Systematics and Evolutionary Research , vol.48 , pp. 229-237
    • Dapporto, L.1
  • 8
    • 11944258898 scopus 로고
    • Populations, genetic variation, and the delimitation of phylogenetic species
    • Davis, J.I. & Nixon, K.C. (1992) Populations, genetic variation, and the delimitation of phylogenetic species. Systematic Biology, 41, 421-435.
    • (1992) Systematic Biology , vol.41 , pp. 421-435
    • Davis, J.I.1    Nixon, K.C.2
  • 9
    • 80052541245 scopus 로고    scopus 로고
    • A combined genetic-morphometric analysis unravels the complex biogeographical history of Polyommatus icarus and Polyommatus celina common blue butterflies
    • Dincǎ, V., Dapporto, L. & Vila, R. (2011) A combined genetic-morphometric analysis unravels the complex biogeographical history of Polyommatus icarus and Polyommatus celina common blue butterflies. Molecular Ecology, 20, 3921-3935.
    • (2011) Molecular Ecology , vol.20 , pp. 3921-3935
    • Dincǎ, V.1    Dapporto, L.2    Vila, R.3
  • 11
    • 79957578251 scopus 로고    scopus 로고
    • Unexpected layers of cryptic diversity in wood white Leptidea butterflies
    • Dincǎ, V., Lukhtanov, V.A., Talavera, G. & Vila, R. (2011b) Unexpected layers of cryptic diversity in wood white Leptidea butterflies. Nature Communications, 2, 234.
    • (2011) Nature Communications , vol.2 , pp. 234
    • Dincǎ, V.1    Lukhtanov, V.A.2    Talavera, G.3    Vila, R.4
  • 12
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A.J. & Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 15
    • 38849116239 scopus 로고    scopus 로고
    • Cryptic diversification in ancient asexuals: evidence from the bdelloid rotifer Philodina flaviceps
    • Fontaneto, D., Boschetti, C. & Ricci, C. (2007) Cryptic diversification in ancient asexuals: evidence from the bdelloid rotifer Philodina flaviceps. Journal of Evolutionary Biology, 21, 580-587.
    • (2007) Journal of Evolutionary Biology , vol.21 , pp. 580-587
    • Fontaneto, D.1    Boschetti, C.2    Ricci, C.3
  • 17
  • 18
    • 84882749675 scopus 로고    scopus 로고
    • Delimiting species using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: a revised method and evaluation on simulated data sets
    • Fujisawa, T. & Barraclough, T.G. (2013) Delimiting species using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: a revised method and evaluation on simulated data sets. Systematic Biology, 65, 707-724.
    • (2013) Systematic Biology , vol.65 , pp. 707-724
    • Fujisawa, T.1    Barraclough, T.G.2
  • 19
    • 84857632922 scopus 로고    scopus 로고
    • Integration of molecular, ecological, morphological and endosymbiont data for species delimitation within the Pnigalio soemius complex (Hymenoptera: Eulophidae)
    • Gebiola, M., Gómez-Zurita, J., Monti, M.M., Navone, P. & Bernardo, U. (2012) Integration of molecular, ecological, morphological and endosymbiont data for species delimitation within the Pnigalio soemius complex (Hymenoptera: Eulophidae). Molecular Ecology, 21, 1190-1208.
    • (2012) Molecular Ecology , vol.21 , pp. 1190-1208
    • Gebiola, M.1    Gómez-Zurita, J.2    Monti, M.M.3    Navone, P.4    Bernardo, U.5
  • 24
    • 0001935493 scopus 로고
    • Gene genealogies and coalescent process
    • eds D.J. Futuyma & J. Antonivics) Oxford University Press, Oxford, UK.
    • Hudson, R.R. (1990) Gene genealogies and coalescent process. Oxford Surveys in Evolutionary Biology (eds D.J. Futuyma & J. Antonivics ), pp. 1-44. Oxford University Press, Oxford, UK.
    • (1990) Oxford Surveys in Evolutionary Biology , pp. 1-44
    • Hudson, R.R.1
  • 25
    • 34447620474 scopus 로고    scopus 로고
    • Delimiting species without monophyletic gene trees
    • Knowles, L.L. & Carstens, B.C. (2007) Delimiting species without monophyletic gene trees. Systematic Biology, 56, 887-895.
    • (2007) Systematic Biology , vol.56 , pp. 887-895
    • Knowles, L.L.1    Carstens, B.C.2
  • 26
    • 84555177826 scopus 로고    scopus 로고
    • Determining species boundaries in a world full of rarity: singletons, species delimitation methods
    • Lim, G.S., Balke, M. & Meier, R. (2011) Determining species boundaries in a world full of rarity: singletons, species delimitation methods. Systematic Biology, 61, 165-169.
    • (2011) Systematic Biology , vol.61 , pp. 165-169
    • Lim, G.S.1    Balke, M.2    Meier, R.3
  • 27
    • 70349436103 scopus 로고    scopus 로고
    • Can mtDNA barcodes be used to delimit species? A response to Pons (2006)
    • Lohse, K. (2009) Can mtDNA barcodes be used to delimit species? A response to Pons et al. (2006). Systematic Biology, 8, 439-442.
    • (2009) Systematic Biology , vol.8 , pp. 439-442
    • Lohse, K.1
  • 28
    • 78650161506 scopus 로고    scopus 로고
    • Species Delimitation - a Geneious plugin for the exploration of species boundaries
    • Masters, B.C., Fan, V. & Ross, H.A. (2011) Species Delimitation - a Geneious plugin for the exploration of species boundaries. Molecular Ecology Resources, 11, 154-157.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 154-157
    • Masters, B.C.1    Fan, V.2    Ross, H.A.3
  • 29
    • 70349409998 scopus 로고    scopus 로고
    • Accelerated species inventory on Madagascar using coalescent-based models of species delineation
    • Monaghan, M.T., Wild, R., Elliot, M., Fujisawa, T., Balke, M., Inward, D.J.G. et al. (2009) Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Systematic Biology, 58, 298-311.
    • (2009) Systematic Biology , vol.58 , pp. 298-311
    • Monaghan, M.T.1    Wild, R.2    Elliot, M.3    Fujisawa, T.4    Balke, M.5    Inward, D.J.G.6
  • 30
    • 84867436515 scopus 로고    scopus 로고
    • Allopatry as a gordian knot for taxonomists: patterns of DNA barcode divergence in arctic-alpine lepidoptera
    • Mutanen, M., Hausmann, A., Hebert, P.D.N., Landry, J.-F., de Waard, J.R. & Huemer, P. (2012) Allopatry as a gordian knot for taxonomists: patterns of DNA barcode divergence in arctic-alpine lepidoptera. PLoS ONE, 7, e47214.
    • (2012) PLoS ONE , vol.7
    • Mutanen, M.1    Hausmann, A.2    Hebert, P.D.N.3    Landry, J.-F.4    de Waard, J.R.5    Huemer, P.6
  • 31
    • 34547195854 scopus 로고    scopus 로고
    • Mitochondrial DNA divergence and phylogeography in western Palaearctic Parnassiinae (Lepidoptera: Papilionidae): how many species are there?
    • Nazari, V. & Sperling, F. (2007) Mitochondrial DNA divergence and phylogeography in western Palaearctic Parnassiinae (Lepidoptera: Papilionidae): how many species are there? Insect Systematics & Evolution, 38, 121-138.
    • (2007) Insect Systematics & Evolution , vol.38 , pp. 121-138
    • Nazari, V.1    Sperling, F.2
  • 34
    • 65949117034 scopus 로고    scopus 로고
    • Comparative phylogeography of tenebrionid beetles in the Aegean archipelago: the effect of dispersal ability and habitat preference
    • Papadopoulou, A., Anastasiou, I., Keskin, B. & Vogler, A.P. (2009a) Comparative phylogeography of tenebrionid beetles in the Aegean archipelago: the effect of dispersal ability and habitat preference. Molecular Ecology, 18, 2503-2517.
    • (2009) Molecular Ecology , vol.18 , pp. 2503-2517
    • Papadopoulou, A.1    Anastasiou, I.2    Keskin, B.3    Vogler, A.P.4
  • 35
    • 70349410398 scopus 로고    scopus 로고
    • Sampling error does not invalidate the Yule-Coalescent model for species delimitation. A response to Lohse (2009)
    • Papadopoulou, A., Monaghan, M.T., Barraclough, T.G. & Vogler, A.P. (2009b) Sampling error does not invalidate the Yule-Coalescent model for species delimitation. A response to Lohse (2009). Systematic Biology, 58, 442-444.
    • (2009) Systematic Biology , vol.58 , pp. 442-444
    • Papadopoulou, A.1    Monaghan, M.T.2    Barraclough, T.G.3    Vogler, A.P.4
  • 36
    • 1042304216 scopus 로고    scopus 로고
    • APE: analyses of phylogenetics and evolution in R language
    • Paradis, E., Claude, J. & Strimmer, K. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 39
    • 84863084320 scopus 로고    scopus 로고
    • Accounting for uncertainty in species delineation during the analysis of environmental DNA sequence data
    • Powell, J. (2012) Accounting for uncertainty in species delineation during the analysis of environmental DNA sequence data. Methods in Ecology and Evolution, 3, 1-11.
    • (2012) Methods in Ecology and Evolution , vol.3 , pp. 1-11
    • Powell, J.1
  • 40
    • 84859589467 scopus 로고    scopus 로고
    • ABGD, Automatic barcode gap discovery for primary species delimitation
    • Puillandre, N., Lambert, A., Brouillet, S. & Achaz, G. (2012) ABGD, Automatic barcode gap discovery for primary species delimitation. Molecular Ecology, 21, 1864-1877.
    • (2012) Molecular Ecology , vol.21 , pp. 1864-1877
    • Puillandre, N.1    Lambert, A.2    Brouillet, S.3    Achaz, G.4
  • 41
    • 84866789901 scopus 로고    scopus 로고
    • Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model
    • Reid, N.M. & Carstens, B.C. (2012) Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model. BMC Evolutionary Biology, 12, 196.
    • (2012) BMC Evolutionary Biology , vol.12 , pp. 196
    • Reid, N.M.1    Carstens, B.C.2
  • 42
    • 33644832331 scopus 로고    scopus 로고
    • Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference
    • Rubinoff, D. & Holland, B.S. (2005) Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. Systematic Biology, 54, 952-961.
    • (2005) Systematic Biology , vol.54 , pp. 952-961
    • Rubinoff, D.1    Holland, B.S.2
  • 43
    • 0037314098 scopus 로고    scopus 로고
    • r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
    • Sanderson, M.J. (2003) r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics, 19, 301-302.
    • (2003) Bioinformatics , vol.19 , pp. 301-302
    • Sanderson, M.J.1
  • 44
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based Phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based Phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 45
    • 29144475077 scopus 로고    scopus 로고
    • The perils of DNA barcoding and the need for integrative taxonomy
    • Will, K.W., Mishler, B.D. & Wheeler, Q.D. (2005) The perils of DNA barcoding and the need for integrative taxonomy. Systematic Biology, 54, 844-851.
    • (2005) Systematic Biology , vol.54 , pp. 844-851
    • Will, K.W.1    Mishler, B.D.2    Wheeler, Q.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.