-
1
-
-
58449134534
-
Small silencing RNAs: An expanding universe
-
Ghildiyal, M. & Zamore, P. D. Small silencing RNAs: an expanding universe. Nat. Rev. Genet. 10, 94-108 (2009
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
2
-
-
60149098474
-
Small RNAs as guardians of the genome
-
Malone, C. D. & Hannon, G. J. Small RNAs as guardians of the genome. Cell 136, 656-668 (2009
-
(2009)
Cell
, vol.136
, pp. 656-668
-
-
Malone, C.D.1
Hannon, G.J.2
-
3
-
-
44349130233
-
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
-
Watanabe, T. et al. Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes. Nature 453, 539-543 (2008
-
(2008)
Nature
, vol.453
, pp. 539-543
-
-
Watanabe, T.1
-
4
-
-
33748363713
-
L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells
-
Yang, N. & Kazazian, Jr H. H. L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells. Nat. Struct. Mol. Biol. 13, 763-771 (2006
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 763-771
-
-
Yang, N.1
Kazazian Jr., H.H.2
-
5
-
-
34547587566
-
Antiviral immunity directed by small RNAs
-
Ding, S. W. & Voinnet, O. Antiviral immunity directed by small RNAs. Cell 130, 413-426 (2007
-
(2007)
Cell
, vol.130
, pp. 413-426
-
-
Ding, S.W.1
Voinnet, O.2
-
6
-
-
84871363798
-
The DNA virus Invertebrate iridescent virus 6 is a target of the Drosophila RNAi machinery
-
Bronkhorst, A. W. et al. The DNA virus Invertebrate iridescent virus 6 is a target of the Drosophila RNAi machinery. Proc. Natl Acad. Sci. USA 109, E3604-E3613 (2012
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
-
-
Bronkhorst, A.W.1
-
7
-
-
44349104241
-
An endogenous small interfering RNA pathway in Drosophila
-
Czech, B. et al. An endogenous small interfering RNA pathway in Drosophila. Nature 453, 798-802 (2008
-
(2008)
Nature
, vol.453
, pp. 798-802
-
-
Czech, B.1
-
8
-
-
44349174824
-
Endogenous RNA interference provides a somatic defense against Drosophila transposons
-
Chung, W. J., Okamura, K., Martin, R. & Lai, E. C. Endogenous RNA interference provides a somatic defense against Drosophila transposons. Curr. Biol. 18, 795-802 (2008
-
(2008)
Curr. Biol
, vol.18
, pp. 795-802
-
-
Chung, W.J.1
Okamura, K.2
Martin, R.3
Lai, E.C.4
-
9
-
-
44449096738
-
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
-
Ghildiyal, M. et al. Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells. Science 320, 1077-1081 (2008
-
(2008)
Science
, vol.320
, pp. 1077-1081
-
-
Ghildiyal, M.1
-
10
-
-
44349103084
-
Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
-
Kawamura, Y. et al. Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells. Nature 453, 793-797 (2008
-
(2008)
Nature
, vol.453
, pp. 793-797
-
-
Kawamura, Y.1
-
11
-
-
84872533627
-
RNA interference in the nucleus: Roles for small RNAs in transcription, epigenetics and beyond
-
Castel, S. E. & Martienssen, R. A. RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond. Nat. Rev. Genet. 14, 100-112 (2013
-
(2013)
Nat. Rev. Genet
, vol.14
, pp. 100-112
-
-
Castel, S.E.1
Martienssen, R.A.2
-
12
-
-
33846394799
-
Gene regulation by chromatin structure: Paradigms established in Drosophila melanogaster
-
Schulze, S. R. & Wallrath, L. L. Gene regulation by chromatin structure: paradigms established in Drosophila melanogaster. Annu. Rev. Entomol. 52, 171-192 (2007
-
(2007)
Annu. Rev. Entomol
, vol.52
, pp. 171-192
-
-
Schulze, S.R.1
Wallrath, L.L.2
-
13
-
-
59349085770
-
Small RNA-directed heterochromatin formation in the context of development: What flies might learn from fission yeast
-
Huisinga, K. L. & Elgin, S. C. Small RNA-directed heterochromatin formation in the context of development: what flies might learn from fission yeast. Biochim. Biophys. Acta. 1789, 3-16 (2009
-
(2009)
Biochim. Biophys. Acta
, vol.1789
, pp. 3-16
-
-
Huisinga, K.L.1
Elgin, S.C.2
-
14
-
-
65249180127
-
A lot about a little dot-lessons learned from Drosophila melanogaster chromosome 4
-
Riddle, N. C., Shaffer, C. D. & Elgin, S. C. A lot about a little dot-lessons learned from Drosophila melanogaster chromosome 4. Biochem. Cell. Biol. 87, 229-241 (2009
-
(2009)
Biochem. Cell. Biol
, vol.87
, pp. 229-241
-
-
Riddle, N.C.1
Shaffer, C.D.2
Elgin, S.C.3
-
15
-
-
75849124607
-
The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila
-
Fagegaltier, D. et al. The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila. Proc. Natl Acad. Sci. USA 106, 21258-21263 (2009
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 21258-21263
-
-
Fagegaltier, D.1
-
16
-
-
45149095184
-
An investigation of heterochromatin domains on the fourth chromosome of Drosophila melanogaster
-
Riddle, N. C. et al. An investigation of heterochromatin domains on the fourth chromosome of Drosophila melanogaster. Genetics 178, 1177-1191 (2008
-
(2008)
Genetics
, vol.178
, pp. 1177-1191
-
-
Riddle, N.C.1
-
17
-
-
33750935679
-
Element 1360 and RNAi components contribute to HP1-dependent silencing of a pericentric reporter
-
Haynes, K. A., Caudy, A. A., Collins, L. & Elgin, S. C. Element 1360 and RNAi components contribute to HP1-dependent silencing of a pericentric reporter. Curr. Biol. 16, 2222-2227 (2006
-
(2006)
Curr. Biol
, vol.16
, pp. 2222-2227
-
-
Haynes, K.A.1
Caudy, A.A.2
Collins, L.3
Elgin, S.C.4
-
18
-
-
84865538130
-
Ectopic assembly of heterochromatin in Drosophila melanogaster triggered by transposable elements
-
Sentmanat, M. F. & Elgin, S. C. Ectopic assembly of heterochromatin in Drosophila melanogaster triggered by transposable elements. Proc. Natl Acad. Sci. USA 109, 14104-14109 (2012
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 14104-14109
-
-
Sentmanat, M.F.1
Elgin, S.C.2
-
19
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
Nishikura, K. Functions and regulation of RNA editing by ADAR deaminases. Annu. Rev. Biochem. 79, 321-349 (2010
-
(2010)
Annu. Rev. Biochem
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
20
-
-
84881341209
-
The ADAR protein family
-
Savva, Y. A., Rieder, L. E. & Reenan, R. A. The ADAR protein family. Genome Biol. 13, 252 (2012
-
(2012)
Genome Biol
, vol.13
, pp. 252
-
-
Savva, Y.A.1
Rieder, L.E.2
Reenan, R.A.3
-
21
-
-
0030914301
-
RNA editing and hypermutation by adenosine deamination
-
Bass, B. L. RNA editing and hypermutation by adenosine deamination. Trends Biochem. Sci. 22, 157-162 (1997
-
(1997)
Trends Biochem. Sci
, vol.22
, pp. 157-162
-
-
Bass, B.L.1
-
22
-
-
13544275929
-
ADAR1 RNA deaminase limits short interfering RNA efficacy in mammalian cells
-
Yang, W. et al. ADAR1 RNA deaminase limits short interfering RNA efficacy in mammalian cells. J. Biol. Chem. 280, 3946-3953 (2005
-
(2005)
J. Biol. Chem
, vol.280
, pp. 3946-3953
-
-
Yang, W.1
-
23
-
-
26844440157
-
Regulating gene expression through RNA nuclear retention
-
Prasanth, K. V. et al. Regulating gene expression through RNA nuclear retention. Cell 123, 249-263 (2005
-
(2005)
Cell
, vol.123
, pp. 249-263
-
-
Prasanth, K.V.1
-
24
-
-
22144444302
-
The RISC subunit Tudor-SN binds to hyper-edited doublestranded RNA and promotes its cleavage
-
Scadden, A. D. The RISC subunit Tudor-SN binds to hyper-edited doublestranded RNA and promotes its cleavage. Nat. Struct. Mol. Biol. 12, 489-496 (2005
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 489-496
-
-
Scadden, A.D.1
-
25
-
-
0034724519
-
Double-stranded RNA as a template for gene silencing
-
Bass, B. L. Double-stranded RNA as a template for gene silencing. Cell 101, 235-238 (2000
-
(2000)
Cell
, vol.101
, pp. 235-238
-
-
Bass, B.L.1
-
26
-
-
34250624128
-
How does RNA editing affect dsRNA-mediated gene silencing? Cold Spring Harb
-
Bass, B. L. How does RNA editing affect dsRNA-mediated gene silencing? Cold Spring Harb. Symp. Quant. Biol. 71, 285-292 (2006
-
(2006)
Symp. Quant. Biol
, vol.71
, pp. 285-292
-
-
Bass, B.L.1
-
27
-
-
0344305774
-
Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants
-
Tonkin, L. A. & Bass, B. L. Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants. Science 302, 1725 (2003
-
(2003)
Science
, vol.302
, pp. 1725
-
-
Tonkin, L.A.1
Bass, B.L.2
-
28
-
-
0036810232
-
The role of RNA editing by ADARs in RNAi
-
Knight, S. W. & Bass, B. L. The role of RNA editing by ADARs in RNAi. Mol. Cell 10, 809-817 (2002
-
(2002)
Mol. Cell
, vol.10
, pp. 809-817
-
-
Knight, S.W.1
Bass, B.L.2
-
29
-
-
80455164552
-
Competition between ADAR and RNAi pathways for an extensive class of RNA targets
-
Wu, D., Lamm, A. T. & Fire, A. Z. Competition between ADAR and RNAi pathways for an extensive class of RNA targets. Nat. Struct. Mol. Biol. 18, 1094-1101 (2011
-
(2011)
Nat. Struct. Mol. Biol
, vol.18
, pp. 1094-1101
-
-
Wu, D.1
Lamm, A.T.2
Fire, A.Z.3
-
30
-
-
0033529064
-
Regulation of alternative splicing by RNA editing
-
Rueter, S. M., Dawson, T. R. & Emeson, R. B. Regulation of alternative splicing by RNA editing. Nature 399, 75-80 (1999
-
(1999)
Nature
, vol.399
, pp. 75-80
-
-
Rueter, S.M.1
Dawson, T.R.2
Emeson, R.B.3
-
31
-
-
84863814454
-
Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila
-
Rodriguez, J., Menet, J. S. & Rosbash, M. Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila. Mol. Cell. 47, 27-37 (2012
-
(2012)
Mol. Cell
, vol.47
, pp. 27-37
-
-
Rodriguez, J.1
Menet, J.S.2
Rosbash, M.3
-
32
-
-
21844453646
-
Chromosomal storage of the RNA-editing enzyme ADAR1 in Xenopus oocytes
-
Sallacz, N. B. & Jantsch, M. F. Chromosomal storage of the RNA-editing enzyme ADAR1 in Xenopus oocytes. Mol. Biol. Cell 16, 3377-3386 (2005
-
(2005)
Mol. Biol. Cell
, vol.16
, pp. 3377-3386
-
-
Sallacz, N.B.1
Jantsch, M.F.2
-
33
-
-
0345133268
-
Modulation of RNA editing by functional nucleolar sequestration of ADAR2
-
Sansam, C. L., Wells, K. S. & Emeson, R. B. Modulation of RNA editing by functional nucleolar sequestration of ADAR2. Proc. Natl Acad. Sci. USA 100, 14018-14023 (2003
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 14018-14023
-
-
Sansam, C.L.1
Wells, K.S.2
Emeson, R.B.3
-
34
-
-
33644999852
-
Dual modes of RNA-silencing suppression by Flock House virus protein B2
-
Chao, J. A. et al. Dual modes of RNA-silencing suppression by Flock House virus protein B2. Nat. Struct. Mol. Biol. 12, 952-957 (2005
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 952-957
-
-
Chao, J.A.1
-
35
-
-
28544452860
-
The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition
-
Lingel, A., Simon, B., Izaurralde, E. & Sattler, M. The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition. EMBO. Rep. 6, 1149-1155 (2005
-
(2005)
EMBO. Rep
, vol.6
, pp. 1149-1155
-
-
Lingel, A.1
Simon, B.2
Izaurralde, E.3
Sattler, M.4
-
36
-
-
20044378849
-
Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication
-
Slotkin, R. K., Freeling, M. & Lisch, D. Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nat. Genet. 37, 641-644 (2005
-
(2005)
Nat. Genet
, vol.37
, pp. 641-644
-
-
Slotkin, R.K.1
Freeling, M.2
Lisch, D.3
-
37
-
-
0242349693
-
Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays
-
Slotkin, R. K., Freeling, M. & Lisch, D. Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays. Genetics 165, 781-797 (2003
-
(2003)
Genetics
, vol.165
, pp. 781-797
-
-
Slotkin, R.K.1
Freeling, M.2
Lisch, D.3
-
38
-
-
33845866637
-
H3K9 methylation and RNA interference regulate nucleolar organization and repeated DNA stability
-
Peng, J. C. & Karpen, G. H. H3K9 methylation and RNA interference regulate nucleolar organization and repeated DNA stability. Nat. Cell Biol. 9, 25-35 (2007
-
(2007)
Nat. Cell Biol
, vol.9
, pp. 25-35
-
-
Peng, J.C.1
Karpen, G.H.2
-
39
-
-
79953130911
-
Engineered alterations in RNA editing modulate complex behavior in Drosophila: Regulatory diversity of adenosine deaminase acting on RNA (ADAR) targets
-
Jepson, J. E. et al. Engineered alterations in RNA editing modulate complex behavior in Drosophila: regulatory diversity of adenosine deaminase acting on RNA (ADAR) targets. J. Biol. Chem. 286, 8325-8337 (2011
-
(2011)
J. Biol. Chem
, vol.286
, pp. 8325-8337
-
-
Jepson, J.E.1
-
40
-
-
0031869924
-
Developmental regulation of heterochromatin-mediated gene silencing in Drosophila
-
Lu, B. Y., Ma, J. & Eissenberg, J. C. Developmental regulation of heterochromatin-mediated gene silencing in Drosophila. Development 125, 2223-2234 (1998
-
(1998)
Development
, vol.125
, pp. 2223-2234
-
-
Lu, B.Y.1
Ma, J.2
Eissenberg, J.C.3
-
41
-
-
78249276176
-
Chromatin remodeling in the aging genome of Drosophila
-
Wood, J. G. et al. Chromatin remodeling in the aging genome of Drosophila. Aging Cell 9, 971-978 (2010
-
(2010)
Aging Cell
, vol.9
, pp. 971-978
-
-
Wood, J.G.1
-
42
-
-
84855321183
-
Histone methylation makes its mark on longevity
-
Han, S. & Brunet, A. Histone methylation makes its mark on longevity. Trends Cell Biol. 22, 42-49 (2012
-
(2012)
Trends Cell Biol
, vol.22
, pp. 42-49
-
-
Han, S.1
Brunet, A.2
-
43
-
-
84860279477
-
Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila
-
Savva, Y. A. et al. Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila. Nat. Commun. 3, 790 (2012
-
(2012)
Nat. Commun
, vol.3
, pp. 790
-
-
Savva, Y.A.1
-
44
-
-
84856424633
-
Visualizing adenosine-toinosine RNA editing in the Drosophila nervous system
-
Jepson, J. E., Savva, Y. A., Jay, K. A. & Reenan, R. A. Visualizing adenosine-toinosine RNA editing in the Drosophila nervous system. Nat. Methods 9, 189-194 (2012
-
(2012)
Nat. Methods
, vol.9
, pp. 189-194
-
-
Jepson, J.E.1
Savva, Y.A.2
Jay, K.A.3
Reenan, R.A.4
-
45
-
-
77949520652
-
RNA editing genes associated with extreme old age in humans and with lifespan in C. Elegans
-
Sebastiani, P. et al. RNA editing genes associated with extreme old age in humans and with lifespan in C. elegans. PLoS One 4, e8210 (2009
-
(2009)
PLoS One
, vol.4
-
-
Sebastiani, P.1
-
46
-
-
84868207785
-
Mutations in ADAR1 cause Aicardi-Goutieres syndrome associated with a type i interferon signature
-
Rice, G. I. et al. Mutations in ADAR1 cause Aicardi-Goutieres syndrome associated with a type I interferon signature. Nat. Genet. 44, 1243-1248 (2012
-
(2012)
Nat. Genet
, vol.44
, pp. 1243-1248
-
-
Rice, G.I.1
-
47
-
-
84876892072
-
ADAR1 forms a complex with dicer to promote microRNA processing and RNA-induced gene silencing
-
Ota, H. et al. ADAR1 forms a complex with dicer to promote microRNA processing and RNA-induced gene silencing. Cell 153, 575-589 (2013
-
(2013)
Cell
, vol.153
, pp. 575-589
-
-
Ota, H.1
-
48
-
-
84876924361
-
Activation of transposable elements during aging and neuronal decline in Drosophila
-
Li, W. et al. Activation of transposable elements during aging and neuronal decline in Drosophila. Nat. Neurosci. 16, 529-531 (2013
-
(2013)
Nat. Neurosci
, vol.16
, pp. 529-531
-
-
Li, W.1
-
49
-
-
20544466648
-
Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition
-
Muotri, A. R. et al. Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition. Nature 435, 903-910 (2005
-
(2005)
Nature
, vol.435
, pp. 903-910
-
-
Muotri, A.R.1
-
50
-
-
84876307483
-
Transposition-driven genomic heterogeneity in the Drosophila brain
-
Perrat, P. N. et al. Transposition-driven genomic heterogeneity in the Drosophila brain. Science 340, 91-95 (2013
-
(2013)
Science
, vol.340
, pp. 91-95
-
-
Perrat, P.N.1
-
51
-
-
49649118775
-
Methods for homologous recombination in Drosophila
-
Maggert, K. A., Gong, W. J. & Golic, K. G. Methods for homologous recombination in Drosophila. Methods Mol. Biol. 420, 155-174 (2008
-
(2008)
Methods Mol. Biol
, vol.420
, pp. 155-174
-
-
Maggert, K.A.1
Gong, W.J.2
Golic, K.G.3
-
52
-
-
1042300234
-
Immunofluorescent staining of polytene chromosomes: Exploiting genetic tools
-
Stephens, G. E., Craig, C. A., Li, Y., Wallrath, L. L. & Elgin, S. C. Immunofluorescent staining of polytene chromosomes: exploiting genetic tools. Methods Enzymol. 376, 372-393 (2004
-
(2004)
Methods Enzymol
, vol.376
, pp. 372-393
-
-
Stephens, G.E.1
Craig, C.A.2
Li, Y.3
Wallrath, L.L.4
Elgin, S.C.5
-
53
-
-
0029914816
-
Developmental timing and tissue specificity of heterochromatin-mediated silencing
-
Lu, B. Y., Bishop, C. P. & Eissenberg, J. C. Developmental timing and tissue specificity of heterochromatin-mediated silencing. EMBO. J. 15, 1323-1332 (1996
-
(1996)
EMBO. J
, vol.15
, pp. 1323-1332
-
-
Lu, B.Y.1
Bishop, C.P.2
Eissenberg, J.C.3
-
54
-
-
84887476291
-
Genome-wide analysis of A-to-I RNA editing by singlemolecule sequencing in Drosophila
-
doi:10.1038/nsmb.2675
-
St Laurent, G. et al. Genome-wide analysis of A-to-I RNA editing by singlemolecule sequencing in Drosophila. Nat. Struct. Mol. Biol. Advance online publication; doi:10.1038/nsmb.2675 (2013
-
(2013)
Nat. Struct. Mol. Biol. Advance Online Publication;
-
-
St Laurent, G.1
|