메뉴 건너뛰기




Volumn 12, Issue 1, 2013, Pages

Genetic dissection of the polyoxin building block-carbamoylpolyoxamic acid biosynthesis revealing the " pathway redundancy" in metabolic networks

Author keywords

Building block; Carbamoylpolyoxamic acid; Metabolic networks; Pathway redundancy; Polyoxin

Indexed keywords

ACETYLGLUTAMATE KINASE; AMINO ACID ACETYLTRANSFERASE; ANTIBIOTIC AGENT; ARGININE; CARBAMOYLPOLYOXAMIC ACID; CARBAMOYLTRANSFERASE; N ACETYLGLUTAMIC ACID; NUCLEOSIDE; OXIDOREDUCTASE; PHOSPHOTRANSFERASE; POLYOXIMIC ACID; POLYOXIN; UNCLASSIFIED DRUG;

EID: 84889025816     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/1475-2859-12-121     Document Type: Article
Times cited : (10)

References (31)
  • 1
    • 76249100888 scopus 로고    scopus 로고
    • Antimicrobial nucleoside antibiotics targeting cell wall assembly: recent advances in structure-function studies and nucleoside biosynthesis
    • 10.1039/b816215h, 20111805
    • Winn M, Goss RJ, Kimura K, Bugg TD. Antimicrobial nucleoside antibiotics targeting cell wall assembly: recent advances in structure-function studies and nucleoside biosynthesis. Nat Prod Rep 2010, 27:279-304. 10.1039/b816215h, 20111805.
    • (2010) Nat Prod Rep , vol.27 , pp. 279-304
    • Winn, M.1    Goss, R.J.2    Kimura, K.3    Bugg, T.D.4
  • 2
    • 0024209272 scopus 로고
    • Nucleoside antibiotics: structure, biological activity, and biosynthesis
    • 10.7164/antibiotics.41.1711, 3061990
    • Isono K. Nucleoside antibiotics: structure, biological activity, and biosynthesis. J Antibiot (Tokyo) 1988, 41:1711-1739. 10.7164/antibiotics.41.1711, 3061990.
    • (1988) J Antibiot (Tokyo) , vol.41 , pp. 1711-1739
    • Isono, K.1
  • 4
    • 84918308973 scopus 로고
    • Studies on polyoxins antifungal antibiotics part V: isolation and characterization of polyoixns C, D, E, F, G
    • Isono KN, Kobinata J, Sasaki K, Suzuki S. Studies on polyoxins antifungal antibiotics part V: isolation and characterization of polyoixns C, D, E, F, G. Hand I Agri Biol Chem 1967, 31:190-199.
    • (1967) Hand I Agri Biol Chem , vol.31 , pp. 190-199
    • Isono, K.N.1    Kobinata, J.2    Sasaki, K.3    Suzuki, S.4
  • 5
    • 85007969000 scopus 로고
    • Studies on polyoxins, antifungal antibiotics part I: isolation and characterization of polyoxins A and B
    • Isono KN, Kawashima J, Suzuki YS. Studies on polyoxins, antifungal antibiotics part I: isolation and characterization of polyoxins A and B. Agr Biol Chem 1965, 29:854.
    • (1965) Agr Biol Chem , vol.29 , pp. 854
    • Isono, K.N.1    Kawashima, J.2    Suzuki, Y.S.3
  • 6
    • 84890186664 scopus 로고    scopus 로고
    • Screening of two strains of polyoxin high-yield bactria with anti-hybrid bacteria character from fomite fermentor lots
    • Zhe W. Screening of two strains of polyoxin high-yield bactria with anti-hybrid bacteria character from fomite fermentor lots. J Biol 2004, 21:36-37.
    • (2004) J Biol , vol.21 , pp. 36-37
    • Zhe, W.1
  • 7
    • 0014868818 scopus 로고
    • Mechanism of action of the antifugal agent polyoxin D
    • 248199, 5473886
    • Endo A, Kakiki K, Misato T. Mechanism of action of the antifugal agent polyoxin D. J Bacteriol 1970, 104:189-196. 248199, 5473886.
    • (1970) J Bacteriol , vol.104 , pp. 189-196
    • Endo, A.1    Kakiki, K.2    Misato, T.3
  • 8
    • 0016159750 scopus 로고
    • Studies on the mode of action of polyoxins. VI. Effect of polyoxin B on chitin synthesis in polyoxin-sensitive and resistant strains of Alternaria kikuchiana
    • 10.7164/antibiotics.27.260, 4854490
    • Hori M, Eguchi J, Kakiki K, Misato T. Studies on the mode of action of polyoxins. VI. Effect of polyoxin B on chitin synthesis in polyoxin-sensitive and resistant strains of Alternaria kikuchiana. J Antibiot (Tokyo) 1974, 27:260-266. 10.7164/antibiotics.27.260, 4854490.
    • (1974) J Antibiot (Tokyo) , vol.27 , pp. 260-266
    • Hori, M.1    Eguchi, J.2    Kakiki, K.3    Misato, T.4
  • 9
    • 67449094184 scopus 로고    scopus 로고
    • Characterization of the polyoxin biosynthetic gene cluster from Streptomyces cacaoi and engineered production of polyoxin H
    • 10.1074/jbc.M807534200, 2667750, 19233844
    • Chen W, Huang T, He X, Meng Q, You D, Bai L, Li J, Wu M, Li R, Xie Z, et al. Characterization of the polyoxin biosynthetic gene cluster from Streptomyces cacaoi and engineered production of polyoxin H. J Biol Chem 2009, 284:10627-10638. 10.1074/jbc.M807534200, 2667750, 19233844.
    • (2009) J Biol Chem , vol.284 , pp. 10627-10638
    • Chen, W.1    Huang, T.2    He, X.3    Meng, Q.4    You, D.5    Bai, L.6    Li, J.7    Wu, M.8    Li, R.9    Xie, Z.10
  • 10
    • 84862199777 scopus 로고    scopus 로고
    • Engineering of an industrial polyoxin producer for the rational production of hybrid peptidyl nucleoside antibiotics
    • 10.1016/j.ymben.2012.03.006, 22465029
    • Zhai L, Lin S, Qu D, Hong X, Bai L, Chen W, Deng Z. Engineering of an industrial polyoxin producer for the rational production of hybrid peptidyl nucleoside antibiotics. Metab Eng 2012, 14:388-393. 10.1016/j.ymben.2012.03.006, 22465029.
    • (2012) Metab Eng , vol.14 , pp. 388-393
    • Zhai, L.1    Lin, S.2    Qu, D.3    Hong, X.4    Bai, L.5    Chen, W.6    Deng, Z.7
  • 11
    • 33947378256 scopus 로고    scopus 로고
    • Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms
    • 10.1128/MMBR.00032-06, 1847373, 17347518
    • Xu Y, Labedan B, Glansdorff N. Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms. Microbiol Mol Biol Rev 2007, 71:36-47. 10.1128/MMBR.00032-06, 1847373, 17347518.
    • (2007) Microbiol Mol Biol Rev , vol.71 , pp. 36-47
    • Xu, Y.1    Labedan, B.2    Glansdorff, N.3
  • 13
    • 0028324905 scopus 로고
    • Cloning and expression in Escherichia coli of a Streptomyces coelicolor A3(2) argCJB gene cluster
    • Hindle Z, Callis R, Dowden S, Rudd BA, Baumberg S. Cloning and expression in Escherichia coli of a Streptomyces coelicolor A3(2) argCJB gene cluster. Microbiology 1994, 140(Pt 2):311-320.
    • (1994) Microbiology , vol.140 , Issue.PART 2 , pp. 311-320
    • Hindle, Z.1    Callis, R.2    Dowden, S.3    Rudd, B.A.4    Baumberg, S.5
  • 14
    • 0028050071 scopus 로고
    • The NodD proteins of Rhizobium sp. Strain BR816 differ in their interactions with coinducers and in their activities for nodulation of different host plants
    • 201864, 7986038
    • Van Rhijn P, Desair J, Vlassak K, Vanderleyden J. The NodD proteins of Rhizobium sp. Strain BR816 differ in their interactions with coinducers and in their activities for nodulation of different host plants. Appl Environ Microbiol 1994, 60:3615-3623. 201864, 7986038.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3615-3623
    • Van Rhijn, P.1    Desair, J.2    Vlassak, K.3    Vanderleyden, J.4
  • 15
    • 1642267393 scopus 로고    scopus 로고
    • ThyA as a selection marker in construction of food-grade host-vector and integration systems for Streptococcus thermophilus
    • 10.1128/AEM.70.3.1858-1864.2004, 368358, 15006818
    • Sasaki Y, Ito Y, Sasaki T. ThyA as a selection marker in construction of food-grade host-vector and integration systems for Streptococcus thermophilus. Appl Environ Microbiol 2004, 70:1858-1864. 10.1128/AEM.70.3.1858-1864.2004, 368358, 15006818.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 1858-1864
    • Sasaki, Y.1    Ito, Y.2    Sasaki, T.3
  • 17
    • 0037394583 scopus 로고    scopus 로고
    • Recent advances in antimicrobial nucleoside antibiotics targeting cell wall biosynthesis
    • 10.1039/b202149h, 12735700
    • Kimura K, Bugg TD. Recent advances in antimicrobial nucleoside antibiotics targeting cell wall biosynthesis. Nat Prod Rep 2003, 20:252-273. 10.1039/b202149h, 12735700.
    • (2003) Nat Prod Rep , vol.20 , pp. 252-273
    • Kimura, K.1    Bugg, T.D.2
  • 18
    • 27744560967 scopus 로고    scopus 로고
    • 3′-Enolpyruvyl-UMP, a novel and unexpected metabolite in nikkomycin biosynthesis
    • 10.1002/cbic.200500208, 16206325
    • Ginj C, Ruegger H, Amrhein N, Macheroux P. 3′-Enolpyruvyl-UMP, a novel and unexpected metabolite in nikkomycin biosynthesis. Chembiochem 2005, 6:1974-1976. 10.1002/cbic.200500208, 16206325.
    • (2005) Chembiochem , vol.6 , pp. 1974-1976
    • Ginj, C.1    Ruegger, H.2    Amrhein, N.3    Macheroux, P.4
  • 19
    • 0017382387 scopus 로고
    • Biosynthesis of the polyoxins, nucleoside peptide antibiotics: biosynthetic pathway for 5-O-carbamoyl-2-amino-2-deoxy-L-xylonic acid (carbamoylpolyoxamic acid)
    • 10.1021/bi00633a013, 889792
    • Funayama S, Isono K. Biosynthesis of the polyoxins, nucleoside peptide antibiotics: biosynthetic pathway for 5-O-carbamoyl-2-amino-2-deoxy-L-xylonic acid (carbamoylpolyoxamic acid). Biochemistry 1977, 16:3121-3127. 10.1021/bi00633a013, 889792.
    • (1977) Biochemistry , vol.16 , pp. 3121-3127
    • Funayama, S.1    Isono, K.2
  • 20
    • 0016821674 scopus 로고
    • Biosynthesis of the polyoxins, nucleoside peptide antibiotics: a new metabolic role for L-isoleucine as a precursor for 3-ethylidene-L-azetidine-2-carboxylic acid (polyoximic acid)
    • 10.1021/bi00684a031, 1156577
    • Isono K, Funayama S, Suhadolnik RJ. Biosynthesis of the polyoxins, nucleoside peptide antibiotics: a new metabolic role for L-isoleucine as a precursor for 3-ethylidene-L-azetidine-2-carboxylic acid (polyoximic acid). Biochemistry 1975, 14:2992-2996. 10.1021/bi00684a031, 1156577.
    • (1975) Biochemistry , vol.14 , pp. 2992-2996
    • Isono, K.1    Funayama, S.2    Suhadolnik, R.J.3
  • 21
    • 0016601126 scopus 로고
    • Biosynthesis of the polyoxins, nucleoside peptide antibiotics: glutamate as an origin of 2-amino-2-deoxy-L-xylonic acid (polyoxamic acid)
    • 10.1021/bi00697a005, 1203243
    • Funayama S, Isono K. Biosynthesis of the polyoxins, nucleoside peptide antibiotics: glutamate as an origin of 2-amino-2-deoxy-L-xylonic acid (polyoxamic acid). Biochemistry 1975, 14:5568. 10.1021/bi00697a005, 1203243.
    • (1975) Biochemistry , vol.14 , pp. 5568
    • Funayama, S.1    Isono, K.2
  • 22
    • 1942490112 scopus 로고    scopus 로고
    • A bacterial acetyltransferase capable of regioselective N-acetylation of antibiotics and histones
    • 10.1016/j.chembiol.2004.03.017, 15123251
    • Vetting MW, Magnet S, Nieves E, Roderick SL, Blanchard JS. A bacterial acetyltransferase capable of regioselective N-acetylation of antibiotics and histones. Chem Biol 2004, 11:565-573. 10.1016/j.chembiol.2004.03.017, 15123251.
    • (2004) Chem Biol , vol.11 , pp. 565-573
    • Vetting, M.W.1    Magnet, S.2    Nieves, E.3    Roderick, S.L.4    Blanchard, J.S.5
  • 23
    • 78650227281 scopus 로고    scopus 로고
    • Economical evolution: microbes reduce the synthetic cost of extracellular proteins
    • Smith DR, Chapman MR. Economical evolution: microbes reduce the synthetic cost of extracellular proteins. MBio 2010, 3:1-10.
    • (2010) MBio , vol.3 , pp. 1-10
    • Smith, D.R.1    Chapman, M.R.2
  • 24
    • 0026742139 scopus 로고
    • Arginine regulon of Escherichia coli K-12: a study of repressor-operator interactions and of in vitro binding affinities versus in vivo repression
    • 10.1016/0022-2836(92)90953-H, 1640456
    • Charlier D, Roovers M, Van Vliet F, Boyen A, Cunin R, Nakamura Y, Glansdorff N, Pierard A. Arginine regulon of Escherichia coli K-12: a study of repressor-operator interactions and of in vitro binding affinities versus in vivo repression. J Mol Biol 1992, 226:367-386. 10.1016/0022-2836(92)90953-H, 1640456.
    • (1992) J Mol Biol , vol.226 , pp. 367-386
    • Charlier, D.1    Roovers, M.2    Van Vliet, F.3    Boyen, A.4    Cunin, R.5    Nakamura, Y.6    Glansdorff, N.7    Pierard, A.8
  • 25
    • 69949173261 scopus 로고    scopus 로고
    • Functional characterization of the first two actinomycete 4-amino-4-deoxychorismate lyase genes
    • 10.1099/mic.0.026336-0, 19389784
    • Zhang Y, Bai L, Deng Z. Functional characterization of the first two actinomycete 4-amino-4-deoxychorismate lyase genes. Microbiology 2009, 155:2450-2459. 10.1099/mic.0.026336-0, 19389784.
    • (2009) Microbiology , vol.155 , pp. 2450-2459
    • Zhang, Y.1    Bai, L.2    Deng, Z.3
  • 26
    • 4544319124 scopus 로고    scopus 로고
    • Two proteins with ornithine acetyltransferase activity show different functions in Streptomyces clavuligerus: Oat2 modulates clavulanic acid biosynthesis in response to arginine
    • 10.1128/JB.186.19.6501-6507.2004, 516601, 15375131
    • de la Fuente A, Martin JF, Rodriguez-Garcia A, Liras P. Two proteins with ornithine acetyltransferase activity show different functions in Streptomyces clavuligerus: Oat2 modulates clavulanic acid biosynthesis in response to arginine. J Bacteriol 2004, 186:6501-6507. 10.1128/JB.186.19.6501-6507.2004, 516601, 15375131.
    • (2004) J Bacteriol , vol.186 , pp. 6501-6507
    • de la Fuente, A.1    Martin, J.F.2    Rodriguez-Garcia, A.3    Liras, P.4
  • 28
    • 0032942468 scopus 로고    scopus 로고
    • FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content
    • 10.1111/j.1574-6968.1999.tb13576.x, 10339816
    • Ishikawa J, Hotta K. FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G + C content. FEMS Microbiol Lett 1999, 174:251-253. 10.1111/j.1574-6968.1999.tb13576.x, 10339816.
    • (1999) FEMS Microbiol Lett , vol.174 , pp. 251-253
    • Ishikawa, J.1    Hotta, K.2
  • 30
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • 10.1073/pnas.120163297, 18686, 10829079
    • Datsenko KA, Wanner BL. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 2000, 97:6640-6645. 10.1073/pnas.120163297, 18686, 10829079.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 31
    • 0035865106 scopus 로고    scopus 로고
    • Liquid chromatography-electrospray mass spectrometry of tunicamycin-type antibiotics
    • 10.1006/abio.2000.4952, 11161308
    • Tsvetanova BC, Price NP. Liquid chromatography-electrospray mass spectrometry of tunicamycin-type antibiotics. Anal Biochem 2001, 289:147-156. 10.1006/abio.2000.4952, 11161308.
    • (2001) Anal Biochem , vol.289 , pp. 147-156
    • Tsvetanova, B.C.1    Price, N.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.