FramePlot: A new implementation of the Frame analysis for predicting protein-coding regions in bacterial DNA with a high G+C content

FEMS Microbiology Letters

Volumn 174, Issue 2, 1999, Pages 251-253

  Ishikawa, Jun ^a   Hotta, Kunimoto ^a  

^a NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

Author keywords

High G+C content; Streptomyces

Indexed keywords

BACTERIAL DNA;

AMINO ACID SEQUENCE; COMPUTER PROGRAM; DATA BASE; INTERNET; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PREDICTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SHORT SURVEY; STREPTOMYCES;

BACTERIA (MICROORGANISMS); STREPTOMYCES;

EID: 0032942468     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(99)00150-0     Document Type: Article

References (5)

1. Nakamura, Y., Gojobori, T. and Ikemura, T. (1997) Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Res. 25, 244-245
2. Bibb, M.J., Findlay, P.R. and Johnson, M.W. (1984) The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences. Gene 30, 157-166.
3. Ishikawa, J. and Hotta, K. (1991) Nucleotide sequence and transcriptional start point of the kan gene encoding an amino-glycoside 3-N-acetyltransferase from Streptomyces griseus SS-1198PR. Gene 108, 127-132.
4. http://www.ncbi.nlm.nih.gov/BLAST/
5. Gleeson, M. http://www.unimelb.edu.au/fly/fly.html