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Volumn 7, Issue 11, 2013, Pages 10211-10217

Four-way junction-driven DNA strand displacement and its application in building majority logic circuit

Author keywords

DNA based nanodevices; four way junction; G quadruplex; logic circuit; strand displacement

Indexed keywords

DISPLACEMENT METHOD; DNA STRAND DISPLACEMENTS; FLUORESCENCE SIGNALS; FOUR-WAY JUNCTION; FUNCTIONAL DOMAINS; G-QUADRUPLEXES; NANO-DEVICES; STRAND DISPLACEMENT;

EID: 84888882728     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/nn4044854     Document Type: Article
Times cited : (100)

References (42)
  • 3
    • 34250634835 scopus 로고    scopus 로고
    • A Supramolecular Chemistry Basis for Molecular Logic and Computation
    • de Silva, A. P.; Uchiyama, S.; Vance, T. P.; Wannalerse, B. A Supramolecular Chemistry Basis for Molecular Logic and Computation Coord. Chem. Rev. 2007, 251, 1623-1632
    • (2007) Coord. Chem. Rev. , vol.251 , pp. 1623-1632
    • De Silva, A.P.1    Uchiyama, S.2    Vance, T.P.3    Wannalerse, B.4
  • 4
    • 53549115049 scopus 로고    scopus 로고
    • Digital Information Processing in Molecular Systems
    • Szacilowski, K. Digital Information Processing in Molecular Systems Chem. Rev. 2008, 108, 3481-3548
    • (2008) Chem. Rev. , vol.108 , pp. 3481-3548
    • Szacilowski, K.1
  • 5
    • 77950115841 scopus 로고    scopus 로고
    • Smart Molecules at Work-Mimicking Advanced Logic Operations
    • Andreasson, J.; Pischel, U. Smart Molecules at Work-Mimicking Advanced Logic Operations Chem. Soc. Rev. 2010, 39, 174-188
    • (2010) Chem. Soc. Rev. , vol.39 , pp. 174-188
    • Andreasson, J.1    Pischel, U.2
  • 7
    • 33846889540 scopus 로고    scopus 로고
    • Biotechnology-Logic Goes in Vitro
    • Shapiro, E.; Gil, B. Biotechnology-Logic Goes in Vitro Nat. Nanotechnol. 2007, 2, 84-85
    • (2007) Nat. Nanotechnol. , vol.2 , pp. 84-85
    • Shapiro, E.1    Gil, B.2
  • 8
    • 67650360431 scopus 로고    scopus 로고
    • Biocomputers: From Test Tubes to Live Cells
    • Benenson, Y. Biocomputers: From Test Tubes to Live Cells Mol. Biosyst. 2009, 5, 675-685
    • (2009) Mol. Biosyst. , vol.5 , pp. 675-685
    • Benenson, Y.1
  • 9
    • 77951588007 scopus 로고    scopus 로고
    • Enzyme-Based Logic Systems for Information Processing
    • Katz, E.; Privman, V. Enzyme-Based Logic Systems for Information Processing Chem. Soc. Rev. 2010, 39, 1835-1857
    • (2010) Chem. Soc. Rev. , vol.39 , pp. 1835-1857
    • Katz, E.1    Privman, V.2
  • 11
    • 81255196511 scopus 로고    scopus 로고
    • Bioelectrochemical Interface Engineering: Toward the Fabrication of Electrochemical Biosensors, Biofuel Cells, and Self-Powered Logic Biosensors
    • Zhou, M.; Dong, S. Bioelectrochemical Interface Engineering: Toward the Fabrication of Electrochemical Biosensors, Biofuel Cells, and Self-Powered Logic Biosensors Acc. Chem. Res. 2011, 44, 1232-1243
    • (2011) Acc. Chem. Res. , vol.44 , pp. 1232-1243
    • Zhou, M.1    Dong, S.2
  • 12
    • 0028114541 scopus 로고
    • Molecular computation of solutions to combinatorial problems
    • Adleman, L. M. Molecular Computation of Solutions to Combinatorial Problems Science 1994, 266, 1021-1024 (Pubitemid 24373714)
    • (1994) Science , vol.266 , Issue.5187 , pp. 1021-1024
    • Adleman, L.M.1
  • 13
    • 84863980696 scopus 로고    scopus 로고
    • Biomolecular Computing Systems: Principles, Progress and Potential
    • Benenson, Y. Biomolecular Computing Systems: Principles, Progress and Potential Nat. Rev. Genet. 2012, 13, 455-468
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 455-468
    • Benenson, Y.1
  • 14
    • 84857335824 scopus 로고    scopus 로고
    • A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads
    • Douglas, S. M.; Bachelet, I.; Church, G. M. A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads Science 2012, 335, 831-834
    • (2012) Science , vol.335 , pp. 831-834
    • Douglas, S.M.1    Bachelet, I.2    Church, G.M.3
  • 16
    • 29244456551 scopus 로고    scopus 로고
    • Digital circuit optimization via geometric programming
    • DOI 10.1287/opre.1050.0254
    • Boyd, S. P.; Kim, S. J.; Patil, D. D.; Horowitz, M. A. Digital Circuit Optimization via Geometric Programming Oper. Res. 2005, 53, 899-932 (Pubitemid 43061808)
    • (2005) Operations Research , vol.53 , Issue.6 , pp. 899-932
    • Boyd, S.P.1    Kim, S.-J.2    Patil, D.D.3    Horowitz, M.A.4
  • 17
    • 79957946108 scopus 로고    scopus 로고
    • Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades
    • Qian, L. L.; Winfree, E. Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades Science 2011, 332, 1196-1201
    • (2011) Science , vol.332 , pp. 1196-1201
    • Qian, L.L.1    Winfree, E.2
  • 18
    • 0034632783 scopus 로고    scopus 로고
    • A DNA-fuelled molecular machine made of DNA
    • DOI 10.1038/35020524
    • Yurke, B.; Turberfield, A. J.; Mills, A. P.; Simmel, F. C.; Neumann, J. L. A DNA-Fuelled Molecular Machine Made of DNA Nature 2000, 406, 605-608 (Pubitemid 30641042)
    • (2000) Nature , vol.406 , Issue.6796 , pp. 605-608
    • Yurke, B.1    Turberfield, A.J.2    Mills Jr., A.P.3    Simmel, F.C.4    Neumann, J.L.5
  • 19
    • 72249110882 scopus 로고    scopus 로고
    • Control of DNA Strand Displacement Kinetics Using Toehold Exchange
    • Zhang, D. Y.; Winfree, E. Control of DNA Strand Displacement Kinetics Using Toehold Exchange J. Am. Chem. Soc. 2009, 131, 17303-17314
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 17303-17314
    • Zhang, D.Y.1    Winfree, E.2
  • 20
    • 33845411737 scopus 로고    scopus 로고
    • Enzyme-free nucleic acid logic circuits
    • DOI 10.1126/science.1132493
    • Seelig, G.; Soloveichik, D.; Zhang, D. Y.; Winfree, E. Enzyme-Free Nucleic Acid Logic Circuits Science 2006, 314, 1585-1588 (Pubitemid 44907149)
    • (2006) Science , vol.314 , Issue.5805 , pp. 1585-1588
    • Seelig, G.1    Soloveichik, D.2    Zhang, D.Y.3    Winfree, E.4
  • 21
    • 79960650829 scopus 로고    scopus 로고
    • Neural Network Computation with DNA Strand Displacement Cascades
    • Qian, L. L.; Winfree, E.; Bruck, J. Neural Network Computation with DNA Strand Displacement Cascades Nature 2011, 475, 368-372
    • (2011) Nature , vol.475 , pp. 368-372
    • Qian, L.L.1    Winfree, E.2    Bruck, J.3
  • 23
    • 84871566239 scopus 로고    scopus 로고
    • A Logical Molecular Circuit for Programmable and Autonomous Regulation of Protein Activity Using DNA Aptamer-Protein Interactions
    • Han, D.; Zhu, Z.; Wu, C.; Peng, L.; Zhou, L.; Gulbakan, B.; Zhu, G.; Williams, K. R.; Tan, W. A Logical Molecular Circuit for Programmable and Autonomous Regulation of Protein Activity Using DNA Aptamer-Protein Interactions J. Am. Chem. Soc. 2012, 134, 20797-20804
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 20797-20804
    • Han, D.1    Zhu, Z.2    Wu, C.3    Peng, L.4    Zhou, L.5    Gulbakan, B.6    Zhu, G.7    Williams, K.R.8    Tan, W.9
  • 24
    • 84877123075 scopus 로고    scopus 로고
    • Enzyme-Free Unlabeled DNA Logic Circuits Based on Toehold-Mediated Strand Displacement and Split G-Quadruplex Enhanced Fluorescence
    • Zhu, J.; Zhang, L.; Li, T.; Dong, S.; Wang, E. Enzyme-Free Unlabeled DNA Logic Circuits Based on Toehold-Mediated Strand Displacement and Split G-Quadruplex Enhanced Fluorescence Adv. Mater. 2013, 25, 2440-2444
    • (2013) Adv. Mater. , vol.25 , pp. 2440-2444
    • Zhu, J.1    Zhang, L.2    Li, T.3    Dong, S.4    Wang, E.5
  • 25
    • 84872416211 scopus 로고    scopus 로고
    • Combinatorial Displacement of DNA Strands: Application to Matrix Multiplication and Weighted Sums
    • Genot, A. J.; Bath, J.; Turberfield, A. J. Combinatorial Displacement of DNA Strands: Application to Matrix Multiplication and Weighted Sums Angew. Chem. 2012, 52, 1189-1192
    • (2012) Angew. Chem. , vol.52 , pp. 1189-1192
    • Genot, A.J.1    Bath, J.2    Turberfield, A.J.3
  • 26
    • 79851473411 scopus 로고    scopus 로고
    • Cooperative Hybridization of Oligonucleotides
    • Zhang, D. Y. Cooperative Hybridization of Oligonucleotides J. Am. Chem. Soc. 2011, 133, 1077-1086
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 1077-1086
    • Zhang, D.Y.1
  • 27
    • 77956628861 scopus 로고    scopus 로고
    • A DNA-Origami Chip Platform for Label-Free SNP Genotyping Using Toehold-Mediated Strand Displacement
    • Zhang, Z.; Zeng, D. D.; Ma, H. W.; Feng, G. Y.; Hu, J.; He, L.; Li, C.; Fan, C. H. A DNA-Origami Chip Platform for Label-Free SNP Genotyping Using Toehold-Mediated Strand Displacement Small 2010, 6, 1854-1858
    • (2010) Small , vol.6 , pp. 1854-1858
    • Zhang, Z.1    Zeng, D.D.2    Ma, H.W.3    Feng, G.Y.4    Hu, J.5    He, L.6    Li, C.7    Fan, C.H.8
  • 28
    • 84867802881 scopus 로고    scopus 로고
    • Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas
    • Acuna, G. P.; Moller, F. M.; Holzmeister, P.; Beater, S.; Lalkens, B.; Tinnefeld, P. Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas Science 2012, 338, 506-510
    • (2012) Science , vol.338 , pp. 506-510
    • Acuna, G.P.1    Moller, F.M.2    Holzmeister, P.3    Beater, S.4    Lalkens, B.5    Tinnefeld, P.6
  • 29
    • 64349099137 scopus 로고    scopus 로고
    • Designer DNA Nanoarchitectures
    • Lin, C.; Liu, Y.; Yan, H. Designer DNA Nanoarchitectures Biochemistry 2009, 48, 1663-1674
    • (2009) Biochemistry , vol.48 , pp. 1663-1674
    • Lin, C.1    Liu, Y.2    Yan, H.3
  • 30
    • 0013416929 scopus 로고    scopus 로고
    • Simulating threshold circuits by majority circuits
    • PII S0097539794274519
    • Goldmann, M.; Karpinski, M. Simulating Threshold Circuits by Majority Circuits SIAM J. Comput. 1998, 27, 230-246 (Pubitemid 128596827)
    • (1998) SIAM Journal on Computing , vol.27 , Issue.1 , pp. 230-246
    • Goldmann, M.1    Karpinski, M.2
  • 31
    • 84861563063 scopus 로고    scopus 로고
    • Magnetic Quantum Cellular Automata-Based Logic Computation Structure: A Full-Adder Study
    • Yang, X.; Cai, L.; Kang, Q. Magnetic Quantum Cellular Automata-Based Logic Computation Structure: A Full-Adder Study J. Comput. Theor. Nanosci. 2012, 9, 621-625
    • (2012) J. Comput. Theor. Nanosci. , vol.9 , pp. 621-625
    • Yang, X.1    Cai, L.2    Kang, Q.3
  • 32
    • 30844442443 scopus 로고    scopus 로고
    • Majority logic gate for magnetic quantum-dot cellular automata
    • DOI 10.1126/science.1120506
    • Imre, A.; Csaba, G.; Ji, L.; Orlov, A.; Bernstein, G. H.; Porod, W. Majority Logic Gate for Magnetic Quantum-Dot Cellular Automata Science 2006, 311, 205-208 (Pubitemid 43108181)
    • (2006) Science , vol.311 , Issue.5758 , pp. 205-208
    • Imre, A.1    Csaba, G.2    Ji, L.3    Orlov, A.4    Bernstein, G.H.5    Porod, W.6
  • 33
    • 84879089319 scopus 로고    scopus 로고
    • Three-Input Majority Logic Gate and Multiple Input Logic Circuit Based on DNA Strand Displacement
    • Li, W.; Yang, Y.; Yan, H.; Liu, Y. Three-Input Majority Logic Gate and Multiple Input Logic Circuit Based on DNA Strand Displacement Nano Lett. 2013, 13, 2980-2988
    • (2013) Nano Lett. , vol.13 , pp. 2980-2988
    • Li, W.1    Yang, Y.2    Yan, H.3    Liu, Y.4
  • 34
    • 84870032006 scopus 로고    scopus 로고
    • Measurement of the Base Number of DNA Using a Special Calliper Made of a Split G-quadruplex
    • Zhu, J.; Zhang, L.; Wang, E. Measurement of the Base Number of DNA Using a Special Calliper Made of a Split G-quadruplex Chem. Commun. 2012, 48, 11990-11992
    • (2012) Chem. Commun. , vol.48 , pp. 11990-11992
    • Zhu, J.1    Zhang, L.2    Wang, E.3
  • 35
    • 84455208141 scopus 로고    scopus 로고
    • Contribution of Potassium Ion and Split Modes of G-quadruplex to the Sensitivity and Selectivity of Label-Free Sensor Toward DNA Detection Using Fluorescence
    • Ren, J.; Wang, J.; Wang, J.; Luedtke, N. W.; Wang, E. Contribution of Potassium Ion and Split Modes of G-quadruplex to the Sensitivity and Selectivity of Label-Free Sensor Toward DNA Detection Using Fluorescence Biosens. Bioelectron. 2012, 31, 316-322
    • (2012) Biosens. Bioelectron. , vol.31 , pp. 316-322
    • Ren, J.1    Wang, J.2    Wang, J.3    Luedtke, N.W.4    Wang, E.5
  • 36
    • 0029945146 scopus 로고    scopus 로고
    • Recognition of anionic porphyrins by DNA aptamers
    • DOI 10.1021/bi960038h
    • Li, Y.; Geyer, C. R.; Sen, D. Recognition of Anionic Porphyrins by DNA Aptamers Biochemistry 1996, 35, 6911-6922 (Pubitemid 26172449)
    • (1996) Biochemistry , vol.35 , Issue.21 , pp. 6911-6922
    • Li, Y.1    Geyer, C.R.2    Sen, D.3
  • 37
    • 0032529641 scopus 로고    scopus 로고
    • Fluorescent dyes specific for quadruplex DNA
    • DOI 10.1093/nar/26.16.3724
    • Arthanari, H.; Basu, S.; Kawano, T. L.; Bolton, P. H. Fluorescent Dyes Specific for Quadruplex DNA Nucleic Acids Res. 1998, 26, 3724-3728 (Pubitemid 28367978)
    • (1998) Nucleic Acids Research , vol.26 , Issue.16 , pp. 3724-3728
    • Arthanari, H.1    Basu, S.2    Kawano, T.L.3    Bolton, P.H.4
  • 38
    • 0029746712 scopus 로고    scopus 로고
    • A catalytic DNA for porphyrin metallation
    • DOI 10.1038/nsb0996-743
    • Li, Y.; Sen, D. A Catalytic DNA for Porphyrin Metallation Nat. Struct. Mol. Biol. 1996, 3, 743-747 (Pubitemid 26303398)
    • (1996) Nature Structural Biology , vol.3 , Issue.9 , pp. 743-747
    • Li, Y.1    Sen, D.2
  • 39
    • 77956601312 scopus 로고    scopus 로고
    • Parallel G-Quadruplex-Specific Fluorescent Probe for Monitoring DNA Structural Changes and Label-Free Detection of Potassium Ion
    • Li, T.; Wang, E.; Dong, S. Parallel G-Quadruplex-Specific Fluorescent Probe for Monitoring DNA Structural Changes and Label-Free Detection of Potassium Ion Anal. Chem. 2010, 82, 7576-7580
    • (2010) Anal. Chem. , vol.82 , pp. 7576-7580
    • Li, T.1    Wang, E.2    Dong, S.3
  • 40
    • 54249140142 scopus 로고    scopus 로고
    • RNA Computing in a Living Cell
    • Shapiro, E.; Gil, B. RNA Computing in a Living Cell Science 2008, 322, 387-388
    • (2008) Science , vol.322 , pp. 387-388
    • Shapiro, E.1    Gil, B.2
  • 41
    • 84875636510 scopus 로고    scopus 로고
    • Engineering a Cell-Surface Aptamer Circuit for Targeted and Amplified Photodynamic Cancer Therapy
    • Han, D.; Zhu, G.; Wu, C.; Zhu, Z.; Chen, T.; Zhang, X.; Tan, W. Engineering a Cell-Surface Aptamer Circuit for Targeted and Amplified Photodynamic Cancer Therapy ACS Nano 2013, 7, 2312-2319
    • (2013) ACS Nano , vol.7 , pp. 2312-2319
    • Han, D.1    Zhu, G.2    Wu, C.3    Zhu, Z.4    Chen, T.5    Zhang, X.6    Tan, W.7


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