메뉴 건너뛰기




Volumn 30, Issue 11, 2013, Pages 2487-2493

Molecular evidence for β-tubulin neofunctionalization in retaria (foraminifera and radiolarians)

Author keywords

tubulin; Foraminifera; Microtubule modeling; Positive selection; Radiolarian

Indexed keywords

BETA TUBULIN;

EID: 84888599679     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst150     Document Type: Article
Times cited : (18)

References (39)
  • 2
    • 0004020872 scopus 로고
    • New York: Springer-Verlag
    • Anderson OR. 1983. Radiolaria. New York: Springer-Verlag.
    • (1983) Radiolaria
    • Anderson, O.R.1
  • 3
    • 0036821846 scopus 로고    scopus 로고
    • Reticulopodia: Structural and behavioral basis for the suprageneric placement of granuloreticulosan protists
    • Bowser SS, Travis JL. 2002. Reticulopodia: structural and behavioral basis for the suprageneric placement of granuloreticulosan protists. J Foramin Res. 32:440-447.
    • (2002) J Foramin Res. , vol.32 , pp. 440-447
    • Bowser, S.S.1    Travis, J.L.2
  • 4
    • 0012611327 scopus 로고    scopus 로고
    • Direct transformation of microtubules into helical filaments by low salt concentrations in Reticulomyxa
    • Brueker RN, Hauser M. 1997. Direct transformation of microtubules into helical filaments by low salt concentrations in Reticulomyxa. Eur J Cell Biol. 72(Suppl 43): 177.
    • (1997) Eur J Cell Biol. , vol.72 , Issue.SUPPL. 43 , pp. 177
    • Brueker, R.N.1    Hauser, M.2
  • 6
    • 0842345488 scopus 로고    scopus 로고
    • Protist phylogeny and the high-level classification of Protozoa
    • Cavalier-Smith T. 2003. Protist phylogeny and the high-level classification of Protozoa. Eur J Protistol. 39:338-348.
    • (2003) Eur J Protistol. , vol.39 , pp. 338-348
    • Cavalier-Smith, T.1
  • 7
    • 79954529507 scopus 로고    scopus 로고
    • ProtTest 3: Fast selection of best-fit models of protein evolution
    • Darriba D, Taboada GL, Doallo R, Posada D. 2011. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 27: 1164-1165.
    • (2011) Bioinformatics , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 8
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 9
    • 0347383758 scopus 로고    scopus 로고
    • Modeller: Generation and refinement of homologybased protein structure models
    • Fiser A, Sali A. 2003. Modeller: generation and refinement of homologybased protein structure models. Methods Enzymol. 374:461-491.
    • (2003) Methods Enzymol. , vol.374 , pp. 461-491
    • Fiser, A.1    Sali, A.2
  • 10
    • 0022580991 scopus 로고
    • Polymorphic assembly states of Allogromia tubulin under physiological conditions
    • Golz R, Hauser M. 1986. Polymorphic assembly states of Allogromia tubulin under physiological conditions. Eur J Cell Biol. 40:124-129.
    • (1986) Eur J Cell Biol. , vol.40 , pp. 124-129
    • Golz, R.1    Hauser, M.2
  • 11
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0. Syst Biol. 59:307-321.
    • (2010) Syst Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 12
    • 24744471435 scopus 로고    scopus 로고
    • Structural and functional implications of an unusual foraminiferal b-tubulin
    • Habura A, Wegener L, Travis JL, Bowser SS. 2005. Structural and functional implications of an unusual foraminiferal b-tubulin. Mol Biol Evol. 22:2000-2009.
    • (2005) Mol Biol Evol. , vol.22 , pp. 2000-2009
    • Habura, A.1    Wegener, L.2    Travis, J.L.3    Bowser, S.S.4
  • 13
    • 0016209080 scopus 로고
    • Microtubules and helical microfilaments in the cytoplasm of the foraminifer Allogromia laticollaris, arnold. Investigations with vinblastine and deuteriumoxide to demonstrate a close interrelationship
    • Hauser M, Schwab D. 1974. Microtubules and helical microfilaments in the cytoplasm of the foraminifer Allogromia laticollaris, arnold. Investigations with vinblastine and deuteriumoxide to demonstrate a close interrelationship. Cytobiologie 9:263-279.
    • (1974) Cytobiologie , vol.9 , pp. 263-279
    • Hauser, M.1    Schwab, D.2
  • 14
    • 0012609671 scopus 로고
    • Cytoskeleton of Reticulomyxa filosa reticulopodia contains Glu-tubulin as a main component
    • Hauser M, Lindernblatt J, Hülsmann N. 1989. Cytoskeleton of Reticulomyxa filosa reticulopodia contains Glu-tubulin as a main component. Eur J Protistol. 25:145-157.
    • (1989) Eur J Protistol. , vol.25 , pp. 145-157
    • Hauser, M.1    Lindernblatt, J.2    Hülsmann, N.3
  • 15
    • 3242662798 scopus 로고    scopus 로고
    • 3rd ed. Stuttgart (Germany): E. Schweizerbart'sche Verlagsbuchhandlung
    • Hausmann K, Hülsmann N, Radek R. 2003. Protistology. 3rd ed. Stuttgart (Germany): E. Schweizerbart'sche Verlagsbuchhandlung.
    • (2003) Protistology
    • Hausmann, K.1    Hülsmann, N.2    Radek, R.3
  • 16
    • 77949601825 scopus 로고    scopus 로고
    • CD-HIT Suite: A web server for clustering and comparing biological sequences
    • Huang Y, Niu B, Gao Y, Fu L, Li W. 2010. CD-HIT Suite: A web server for clustering and comparing biological sequences. Bioinformatics 26: 680-682.
    • (2010) Bioinformatics , vol.26 , pp. 680-682
    • Huang, Y.1    Niu, B.2    Gao, Y.3    Fu, L.4    Li, W.5
  • 17
    • 80051534551 scopus 로고    scopus 로고
    • Multigene phylogenetic analyses including diverse radiolarian species support the "Retaria" hypothesis-The sister relationship of Radiolaria and Foraminifera
    • Ishitani Y, Ishikawa SA, Inagaki Y, Tsuchiya M, Takahashi K, Takishita K. 2011. Multigene phylogenetic analyses including diverse radiolarian species support the "Retaria" hypothesis-the sister relationship of Radiolaria and Foraminifera. Mar Micropaleontol. 81:32-42.
    • (2011) Mar Micropaleontol. , vol.81 , pp. 32-42
    • Ishitani, Y.1    Ishikawa, S.A.2    Inagaki, Y.3    Tsuchiya, M.4    Takahashi, K.5    Takishita, K.6
  • 18
    • 0000890763 scopus 로고
    • Ultrastructural changes during reticulopod withdrawal in the foraminiferan protozoan Allogromia sp., strain NF
    • Koury ST, Bowser SS, McGee-Russell SM. 1985. Ultrastructural changes during reticulopod withdrawal in the foraminiferan protozoan Allogromia sp., strain NF. Protoplasma 129:149-156.
    • (1985) Protoplasma , vol.129 , pp. 149-156
    • Koury, S.T.1    Bowser, S.S.2    Mcgee-Russell, S.M.3
  • 20
    • 0031051733 scopus 로고    scopus 로고
    • Sequence analysis and immunofluorescence study of a- And b-tubulins in Reticulomyxa filosa: Implications of the high degree of b2-tubulin divergence
    • Linder S, Schliwa M, Kube-Granderath E. 1997. Sequence analysis and immunofluorescence study of a- And b-tubulins in Reticulomyxa filosa: implications of the high degree of b2-tubulin divergence. Cell Motil Cytoskeleton. 36:164-178.
    • (1997) Cell Motil Cytoskeleton. , vol.36 , pp. 164-178
    • Linder, S.1    Schliwa, M.2    Kube-Granderath, E.3
  • 21
    • 0035834521 scopus 로고    scopus 로고
    • Refined structure of ab-tubulin at 3.5 A resolution
    • Löwe J, Li H, Downing KH, Nogales E. 2001. Refined structure of ab-tubulin at 3.5 A resolution. J Mol Biol. 313:1045-1057.
    • (2001) J Mol Biol. , vol.313 , pp. 1045-1057
    • Löwe, J.1    Li, H.2    Downing, K.H.3    Nogales, E.4
  • 22
    • 0016220801 scopus 로고
    • Dynamic activities and labile microtubules in cytoplasmic transport in the marine foraminiferan, Allogromia
    • McGee-Russell SM. 1974. Dynamic activities and labile microtubules in cytoplasmic transport in the marine foraminiferan, Allogromia. Symp Soc Exp Biol. 28:157-189.
    • (1974) Symp Soc Exp Biol. , vol.28 , pp. 157-189
    • Mcgee-Russell, S.M.1
  • 23
    • 0034871528 scopus 로고    scopus 로고
    • The extended tubulin superfamily
    • McKean PG, Vaughan S, Gull K. 2001. The extended tubulin superfamily. J Cell Sci.. 114:2723-2733.
    • (2001) J Cell Sci.. , vol.114 , pp. 2723-2733
    • Mckean, P.G.1    Vaughan, S.2    Gull, K.3
  • 24
    • 34249698083 scopus 로고    scopus 로고
    • Global eukaryote phylogeny: Combined small- And large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata
    • Moreira D, von der Heyden S, Bass D, López-García P, Chao E, Cavalier-Smith T. 2007. Global eukaryote phylogeny: combined small- And large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata. Mol Phylogenet Evol. 44:255-266.
    • (2007) Mol Phylogenet Evol. , vol.44 , pp. 255-266
    • Moreira, D.1    Von, D.H.S.2    Bass, D.3    López-García, P.4    Chao, E.5    Cavalier-Smith, T.6
  • 26
    • 84862656289 scopus 로고    scopus 로고
    • Distinct functional roles of b-tubulin isotypes in microtubule arrays of Tetrahymena thermophila, a model singlecelled organism
    • Pucciarelli S, Ballarini P, Sparvoli S, Barchetta S, Yu T, Detrich HW 3rd, Miceli C. 2012. Distinct functional roles of b-tubulin isotypes in microtubule arrays of Tetrahymena thermophila, a model singlecelled organism. PLoS One 7:e39694.
    • (2012) PLoS One , vol.7
    • Pucciarelli, S.1    Ballarini, P.2    Sparvoli, S.3    Barchetta, S.4    Yu, T.5    Detrich III, H.W.6    Miceli, C.7
  • 27
    • 0041386108 scopus 로고    scopus 로고
    • MRBAYES 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 28
    • 0022463706 scopus 로고
    • Naturally occurring tubulin-containing paracrystals in Allogromia: Immunocytochemical identification and functional significance
    • Rupp G, Bowser SS, Mannella C, Rieder C. 1986. Naturally occurring tubulin-containing paracrystals in Allogromia: immunocytochemical identification and functional significance. Cell Motil Cytoskeleton. 6: 363-375.
    • (1986) Cell Motil Cytoskeleton , vol.6 , pp. 363-375
    • Rupp, G.1    Bowser, S.S.2    Mannella, C.3    Rieder, C.4
  • 30
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 31
    • 80052068467 scopus 로고    scopus 로고
    • Radiolaria: Achievements and unresolved issues: Taxonomy and cytology
    • Suzuki N, Aita Y. 2011. Radiolaria: Achievements and unresolved issues: Taxonomy and cytology. Plankton Benthos Res. 6:69-91.
    • (2011) Plankton Benthos Res. , vol.6 , pp. 69-91
    • Suzuki, N.1    Aita, Y.2
  • 32
    • 77955478732 scopus 로고    scopus 로고
    • Structural basis of interprotofilament interaction and lateral deformation of microtubules
    • Sui H, Downing KH. 2010. Structural basis of interprotofilament interaction and lateral deformation of microtubules. Structure 18: 1022-1031.
    • (2010) Structure , vol.18 , pp. 1022-1031
    • Sui, H.1    Downing, K.H.2
  • 33
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 34
    • 0003091961 scopus 로고
    • The motility of foraminifera
    • Lee JJ, Anderson OR, editors. London: Academic Press
    • Travis JT, Bowser SS. 1991. The motility of foraminifera. In: Lee JJ, Anderson OR, editors. Biology of Foraminifera. London: Academic Press. p. 91-155.
    • (1991) Biology of Foraminifera , pp. 91-155
    • Travis, J.T.1    Bowser, S.S.2
  • 35
    • 0032446949 scopus 로고    scopus 로고
    • Evidence for a direct conversion between two tubulin polymers- microtubules and helical filaments-in the foraminiferan, Allogromia laticollaris
    • Welnhofer EP, Travis JL. 1998. Evidence for a direct conversion between two tubulin polymers-microtubules and helical filaments-in the foraminiferan, Allogromia laticollaris. Cell Motil Cytoskeleton. 41: 107-116.
    • (1998) Cell Motil Cytoskeleton , vol.41 , pp. 107-116
    • Welnhofer, E.P.1    Travis, J.L.2
  • 36
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. 2007. PAML 4: A program package for phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24:1586-1591.
    • (2007) Mol Biol Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 37
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WSW, Nielsen R. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22: 1107-1118.
    • (2005) Mol Biol Evol. , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.W.2    Nielsen, R.3
  • 38
    • 27544444579 scopus 로고    scopus 로고
    • Phylogenetic analyses of the polycystine Radiolaria based on the 18S rDNA sequences of the Spumellarida and the Nassellarida
    • Yuasa T, Takahashi O, Honda D, Mayama S. 2005. Phylogenetic analyses of the polycystine Radiolaria based on the 18S rDNA sequences of the Spumellarida and the Nassellarida. Eur J Protistol. 41:287-298.
    • (2005) Eur J Protistol. , vol.41 , pp. 287-298
    • Yuasa, T.1    Takahashi, O.2    Honda, D.3    Mayama, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.