메뉴 건너뛰기




Volumn 6, Issue 8, 2011, Pages

Radiolaria divided into Polycystina and Spasmaria in combined 18S and 28S rDNA phylogeny

Author keywords

[No Author keywords available]

Indexed keywords

DNA 18S; DNA 28S; RIBOSOME DNA; UNCLASSIFIED DRUG;

EID: 84856595047     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0023526     Document Type: Article
Times cited : (45)

References (49)
  • 1
    • 0004020872 scopus 로고
    • New York, Springer-Verlag
    • Anderson RO, (1983) Radiolaria. New York Springer-Verlag.
    • (1983) Radiolaria
    • Anderson, R.O.1
  • 4
    • 1942476878 scopus 로고    scopus 로고
    • Small-Subunit Ribosomal RNA Gene Sequences of Phaeodarea Challenge the Monophyly of Haeckel's Radiolaria
    • Polet S, Berney C, Fahrni J, Pawlowski J, (2004) Small-Subunit Ribosomal RNA Gene Sequences of Phaeodarea Challenge the Monophyly of Haeckel's Radiolaria. Protist 155: 53-63.
    • (2004) Protist , vol.155 , pp. 53-63
    • Polet, S.1    Berney, C.2    Fahrni, J.3    Pawlowski, J.4
  • 6
    • 27544444579 scopus 로고    scopus 로고
    • Phylogenetic analyses of the polycystine Radiolaria based on the 18s rDNA sequences of the Spumellarida and the Nassellarida
    • Yuasa T, Takahashi O, Honda D, Mayama S, (2005) Phylogenetic analyses of the polycystine Radiolaria based on the 18s rDNA sequences of the Spumellarida and the Nassellarida. European Journal of Protistology 41: 287-298.
    • (2005) European Journal of Protistology , vol.41 , pp. 287-298
    • Yuasa, T.1    Takahashi, O.2    Honda, D.3    Mayama, S.4
  • 7
    • 33745647540 scopus 로고    scopus 로고
    • Molecular phylogeny of acantharian and polycystine radiolarians based on ribosomal DNA sequences, and some comparisons with data from the fossil record
    • Kunitomo Y, Sarashina I, Iijima M, Endo K, (2006) Molecular phylogeny of acantharian and polycystine radiolarians based on ribosomal DNA sequences, and some comparisons with data from the fossil record. European Journal of Protistology 42.
    • (2006) European Journal of Protistology , vol.42
    • Kunitomo, Y.1    Sarashina, I.2    Iijima, M.3    Endo, K.4
  • 10
    • 33646583481 scopus 로고    scopus 로고
    • Diversity and Distribution of Marine Microbial Eukaryotes in the Arctic Ocean and Adjacent Seas
    • Lovejoy C, Massana R, Pedros-Alio C, (2006) Diversity and Distribution of Marine Microbial Eukaryotes in the Arctic Ocean and Adjacent Seas. Applied and Environmental Microbiology 72: 3085-3095.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 3085-3095
    • Lovejoy, C.1    Massana, R.2    Pedros-Alio, C.3
  • 11
    • 77249106976 scopus 로고    scopus 로고
    • Phylogenetic affiliations of mesopelagic acantharia and acantharian-like environmental 18S rRNA genes off the southern California coast
    • Gilg IC, Amaral-Zettler LA, Countway PD, Moorthi S, Schnetzer A, et al. (2010) Phylogenetic affiliations of mesopelagic acantharia and acantharian-like environmental 18S rRNA genes off the southern California coast. Protist 161: 197-211.
    • (2010) Protist , vol.161 , pp. 197-211
    • Gilg, I.C.1    Amaral-Zettler, L.A.2    Countway, P.D.3    Moorthi, S.4    Schnetzer, A.5
  • 14
  • 15
    • 34249698083 scopus 로고    scopus 로고
    • Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata
    • Moreira D, von der Heyden S, Bass D, López-García P, Chao E, et al. (2007) Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata. Molecular Phylogenetics and Evolution 44: 255-266.
    • (2007) Molecular Phylogenetics and Evolution , vol.44 , pp. 255-266
    • Moreira, D.1    von der Heyden, S.2    Bass, D.3    López-García, P.4    Chao, E.5
  • 16
    • 3242711100 scopus 로고    scopus 로고
    • How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys
    • Berney C, Fahrni J, Pawlowski J, (2004) How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys. BMC Biol 2: 13.
    • (2004) BMC Biol , vol.2 , pp. 13
    • Berney, C.1    Fahrni, J.2    Pawlowski, J.3
  • 17
    • 0242456821 scopus 로고    scopus 로고
    • Phylogeny and Classification of Phylum Cercozoa (Protozoa)
    • Cavalier-Smith T, Chao EEY, (2003) Phylogeny and Classification of Phylum Cercozoa (Protozoa). Protist 154: 341-358.
    • (2003) Protist , vol.154 , pp. 341-358
    • Cavalier-Smith, T.1    Chao, E.E.Y.2
  • 19
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
    • Cavalier-Smith T, (1999) Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. The Journal of Eukaryotic Microbiology 46: 347-366.
    • (1999) The Journal of Eukaryotic Microbiology , vol.46 , pp. 347-366
    • Cavalier-Smith, T.1
  • 21
    • 7244261974 scopus 로고    scopus 로고
    • Molecular phylogeny of solitary shell-bearing Polycystinea (Radiolaria)
    • Takahashi O, Yuasa T, Honda D, Mayama S, (2004) Molecular phylogeny of solitary shell-bearing Polycystinea (Radiolaria). Revue de micropaléontologie 47: 111-118.
    • (2004) Revue De Micropaléontologie , vol.47 , pp. 111-118
    • Takahashi, O.1    Yuasa, T.2    Honda, D.3    Mayama, S.4
  • 22
    • 0030868922 scopus 로고    scopus 로고
    • Phylogenetic relationships between the Acantharea and the Polycystinea: A molecular perspective on Haeckel's Radiolaria
    • Zettler LA, Sogin ML, Caron DA, (1997) Phylogenetic relationships between the Acantharea and the Polycystinea: A molecular perspective on Haeckel's Radiolaria. Proceedings of the National Academy of Sciences 94: 11411-11416.
    • (1997) Proceedings of the National Academy of Sciences , vol.94 , pp. 11411-11416
    • Zettler, L.A.1    Sogin, M.L.2    Caron, D.A.3
  • 25
    • 33845702166 scopus 로고    scopus 로고
    • Molecular diversity of alveolates associated with neritic North Atlantic radiolarians
    • Dolven JK, Lindqvist C, Albert VA, Bjørklund KR, Yuasa T, et al. (2007) Molecular diversity of alveolates associated with neritic North Atlantic radiolarians. Protist 158: 65-76.
    • (2007) Protist , vol.158 , pp. 65-76
    • Dolven, J.K.1    Lindqvist, C.2    Albert, V.A.3    Bjørklund, K.R.4    Yuasa, T.5
  • 26
    • 3042614052 scopus 로고    scopus 로고
    • Trehalose Is a Potent PCR Enhancer: Lowering of DNA Melting Temperature and Thermal Stabilization of Taq Polymerase by the Disaccharide Trehalose
    • Spiess A-N, Mueller N, Ivell R, (2004) Trehalose Is a Potent PCR Enhancer: Lowering of DNA Melting Temperature and Thermal Stabilization of Taq Polymerase by the Disaccharide Trehalose. Clinical Chemistry 50: 1256-1259.
    • (2004) Clinical Chemistry , vol.50 , pp. 1256-1259
    • Spiess, A.-N.1    Mueller, N.2    Ivell, R.3
  • 27
    • 34547840223 scopus 로고    scopus 로고
    • Multiple alignment by aligning alignments
    • Wheeler TJ, Kececioglu JD, (2007) Multiple alignment by aligning alignments. Bioinformatics 23: i559-i568.
    • (2007) Bioinformatics , vol.23
    • Wheeler, T.J.1    Kececioglu, J.D.2
  • 28
    • 3042649996 scopus 로고    scopus 로고
    • Mesquite: a modular system for evolutionary analysis
    • 2.73 ed
    • Maddison W, Maddison D, (2010) Mesquite: a modular system for evolutionary analysis. 2.73 ed.
    • (2010)
    • Maddison, W.1    Maddison, D.2
  • 29
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J, (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 540-552
    • Castresana, J.1
  • 30
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A, (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 31
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D, Buckley TR, (2004) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (2004) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Buckley, T.R.2
  • 32
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 33
    • 70749083848 scopus 로고    scopus 로고
    • AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses
    • Kumar S, Skjaeveland A, Orr R, Enger P, Ruden T, et al. (2009) AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. BMC Bioinformatics 10: 357.
    • (2009) BMC Bioinformatics , vol.10 , pp. 357
    • Kumar, S.1    Skjaeveland, A.2    Orr, R.3    Enger, P.4    Ruden, T.5
  • 34
    • 71249094329 scopus 로고    scopus 로고
    • Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples
    • Marande W, López-García P, Moreira D, (2009) Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples. Environmental Microbiology 11: 3179-3188.
    • (2009) Environmental Microbiology , vol.11 , pp. 3179-3188
    • Marande, W.1    López-García, P.2    Moreira, D.3
  • 35
    • 33645319440 scopus 로고    scopus 로고
    • Phylogenetic position of the small solitary phaeodarians (Radiolaria) based on 18S rDNA sequences by single cell PCR analysis
    • Yuasa T, Takahashi O, Dolven JK, Mayama S, Matsuoka A, et al. (2006) Phylogenetic position of the small solitary phaeodarians (Radiolaria) based on 18S rDNA sequences by single cell PCR analysis. Marine Micropaleontology 59: 104-114.
    • (2006) Marine Micropaleontology , vol.59 , pp. 104-114
    • Yuasa, T.1    Takahashi, O.2    Dolven, J.K.3    Mayama, S.4    Matsuoka, A.5
  • 36
    • 0017610826 scopus 로고
    • Movement generated by interactions between the dense material at the ends of microtubules and non-actin-containing microfilaments in Sticholonche zanclea
    • Cachon J, Cachon M, Tilney L, Tilney M, (1977) Movement generated by interactions between the dense material at the ends of microtubules and non-actin-containing microfilaments in Sticholonche zanclea. The Journal of cell biology 72: 314-338.
    • (1977) The Journal of Cell Biology , vol.72 , pp. 314-338
    • Cachon, J.1    Cachon, M.2    Tilney, L.3    Tilney, M.4
  • 37
    • 0005732425 scopus 로고
    • Sticholonche zanclea Hertwig: A Reinterpretation of its Phylogenetic Position Based Upon New Observations on its Ultrastructure
    • Cachon J, Cachon M, (1978) Sticholonche zanclea Hertwig: A Reinterpretation of its Phylogenetic Position Based Upon New Observations on its Ultrastructure. Archiv für Protistenkunde 120: 148-168.
    • (1978) Archiv Für Protistenkunde , vol.120 , pp. 148-168
    • Cachon, J.1    Cachon, M.2
  • 39
    • 0002941032 scopus 로고
    • Phylum Actinopoda. Class Acantharia
    • In: Margulis L, Corliss JO, Melkonian M, Chapman DJ, editors, Boston, Jones and Bartlett Publishers
    • Febvre J, (1990) Phylum Actinopoda. Class Acantharia. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ, editors. Handbook of protoctista Boston Jones and Bartlett Publishers pp. 353-379.
    • (1990) Handbook of Protoctista , pp. 353-379
    • Febvre, J.1
  • 40
  • 41
    • 0024787673 scopus 로고
    • Biological Minerals Formed from Strontium and Barium Sulphates. III. The Morphology and Crystallography of Strontium Sulphate Crystals from the Colonial Radiolarian, Sphaerozoum punctatum
    • Hughes NP, Perry CC, Anderson OR, Williams RJP, (1989) Biological Minerals Formed from Strontium and Barium Sulphates. III. The Morphology and Crystallography of Strontium Sulphate Crystals from the Colonial Radiolarian, Sphaerozoum punctatum. Proceedings of the Royal Society of London B Biological Sciences 238: 223-233.
    • (1989) Proceedings of the Royal Society of London B Biological Sciences , vol.238 , pp. 223-233
    • Hughes, N.P.1    Perry, C.C.2    Anderson, O.R.3    Williams, R.J.P.4
  • 42
    • 0019748246 scopus 로고
    • The myoneme of the Acantharia (Protozoa): A new model of cellular motility
    • Febvre J, (1981) The myoneme of the Acantharia (Protozoa): A new model of cellular motility. Biosystems 14: 327-336.
    • (1981) Biosystems , vol.14 , pp. 327-336
    • Febvre, J.1
  • 43
    • 0024821343 scopus 로고
    • Motility processes in Acantharia (protozoa) III. Calcium regulation of the contraction - relaxation cycles of in vivo myonemes
    • Febvre J, Febvre-Chevalier C, (1989) Motility processes in Acantharia (protozoa) III. Calcium regulation of the contraction- relaxation cycles of in vivo myonemes. Biology of the Cell 67: 251-261.
    • (1989) Biology of the Cell , vol.67 , pp. 251-261
    • Febvre, J.1    Febvre-Chevalier, C.2
  • 44
    • 0034903594 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa Are Related in Actin Phylogeny: Two Orphans find a home?
    • Keeling PJ, (2001) Foraminifera and Cercozoa Are Related in Actin Phylogeny: Two Orphans find a home? Molecular Biology and Evolution 18: 1551-1557.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 1551-1557
    • Keeling, P.J.1
  • 46
    • 20444446106 scopus 로고    scopus 로고
    • Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria
    • Bass D, Moreira D, Lopez-Garcia P, Polet S, Chao EE, et al. (2005) Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria. Protist 156: 149-161.
    • (2005) Protist , vol.156 , pp. 149-161
    • Bass, D.1    Moreira, D.2    Lopez-Garcia, P.3    Polet, S.4    Chao, E.E.5
  • 47
    • 78049371109 scopus 로고    scopus 로고
    • Evolutionary Relationships among Marine Cercozoans as Inferred from Combined SSU and LSU rDNA Sequences and Polyubiquitin Insertions
    • Chantangsi C, Hoppenrath M, Leander BS, (2010) Evolutionary Relationships among Marine Cercozoans as Inferred from Combined SSU and LSU rDNA Sequences and Polyubiquitin Insertions. Molecular Phylogenetics and Evolution 57: 518-527.
    • (2010) Molecular Phylogenetics and Evolution , vol.57 , pp. 518-527
    • Chantangsi, C.1    Hoppenrath, M.2    Leander, B.S.3
  • 48
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin L, Elwood HJ, Stickel S, Sogin ML, (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491-499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 49
    • 70349091120 scopus 로고    scopus 로고
    • PCR primers for the amplification of the nuclear small subunit ribosomal DNA sequences from polycystine radiolarians
    • Yuasa T, Takahashi O, Honda D, Mayama S, (2004) PCR primers for the amplification of the nuclear small subunit ribosomal DNA sequences from polycystine radiolarians. Japanese Journal of Protozoology 37: 133-137.
    • (2004) Japanese Journal of Protozoology , vol.37 , pp. 133-137
    • Yuasa, T.1    Takahashi, O.2    Honda, D.3    Mayama, S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.