-
1
-
-
0028114541
-
Molecular computation of solutions to combinatorial problems
-
Adleman, L. M., 1994. Molecular computation of solutions to combinatorial problems. Science 266, 1021-1024.
-
(1994)
Science
, vol.266
, pp. 1021-1024
-
-
Adleman, L.M.1
-
2
-
-
0036062777
-
DNA sequence design using templates
-
Arita, M., Kobayashi, S., 2002. DNA sequence design using templates. New Gener. Comput. 20, 263-277.
-
(2002)
New Gener. Comput.
, vol.20
, pp. 263-277
-
-
Arita, M.1
Kobayashi, S.2
-
3
-
-
0345472123
-
Improving sequence design for DNA computing
-
Arita, M., Nishikawa, A., Hagiya, M., Komiya, K., Gouzu, H., Sakamoto, K., 2000. Improving sequence design for DNA computing. In: Proceedings of the Genetic and Evolutionary Computation Conference (GECCO), pp. 875-882.
-
(2000)
Proceedings of the Genetic and Evolutionary Computation Conference (GECCO)
, pp. 875-882
-
-
Arita, M.1
Nishikawa, A.2
Hagiya, M.3
Komiya, K.4
Gouzu, H.5
Sakamoto, K.6
-
4
-
-
0037174189
-
Strand design for biomolecular computation
-
Brenneman, A., Condon, A., 2002. Strand design for biomolecular computation. Theor. Comput. Sci. 287, 39-58.
-
(2002)
Theor. Comput. Sci.
, vol.287
, pp. 39-58
-
-
Brenneman, A.1
Condon, A.2
-
5
-
-
0003738367
-
-
Springer, New York, NY, USA
-
Coello, C. A., Van Veldhuizen, D. A., Lamont, G. B., 2002. Evolutionary algorithms for solving multi-objective problems, genetic algorithms and evolutionary computation, Springer, New York, NY, USA.
-
(2002)
Evolutionary Algorithms for Solving Multi-objective Problems, Genetic Algorithms and Evolutionary Computation
-
-
Coello, C.A.1
Van Veldhuizen, D.A.2
Lamont, G.B.3
-
7
-
-
0005386476
-
Good encodings for DNA-based solutions to combinatorial problems
-
Deaton, R., Murphy, R. C., Garzon, M., Franceschetti, D. R., S. E. Stevens, Jr., 1996. Good encodings for DNA-based solutions to combinatorial problems. In: Proceedings of the 2nd Annual Meeting DNA Based Computation, pp. 247-258.
-
(1996)
Proceedings of the 2nd Annual Meeting DNA Based Computation
, pp. 247-258
-
-
Deaton, R.1
Murphy, R.C.2
Garzon, M.3
Franceschetti, D.R.4
Stevens Jr., S.E.5
-
8
-
-
0000982897
-
Reliability and efficiency of a DNA-based computation
-
Deaton, R., Garzon, M., Murphy, R. C., Rose, J. A., Franceschetti, D. R., Stevens Jr., S. E., 1998. Reliability and efficiency of a DNA-based computation. Phys. Rev. Lett. 80(2), 417-420.
-
(1998)
Phys. Rev. Lett.
, vol.80
, Issue.2
, pp. 417-420
-
-
Deaton, R.1
Garzon, M.2
Murphy, R.C.3
Rose, J.A.4
Franceschetti, D.R.5
Stevens Jr., S.E.6
-
9
-
-
35248827739
-
A PCR-based protocol for in vitro selection of noncrosshybridizing olgionucleotides
-
Deaton, R., Chen, J., Bi, H., Garzon, M., Rubin, H., Wood, D. H., 2002a. A PCR-based protocol for in vitro selection of noncrosshybridizing olgionucleotides. In: Proceedings of the 8th International Workshop DNA Based Computers, pp. 196-204.
-
(2002)
Proceedings of the 8th International Workshop DNA Based Computers
, pp. 196-204
-
-
Deaton, R.1
Chen, J.2
Bi, H.3
Garzon, M.4
Rubin, H.5
Wood, D.H.6
-
10
-
-
35248871656
-
A software tool for generating noncrosshybridization libraries of DNA oligonucleotides
-
Deaton, R., Chen, J., Bi, H., Rose, J. A., 2002b. A software tool for generating noncrosshybridization libraries of DNA oligonucleotides. In: Proceedings of the 8th International Workshop DNA Based Computers, pp. 252-261.
-
(2002)
Proceedings of the 8th International Workshop DNA Based Computers
, pp. 252-261
-
-
Deaton, R.1
Chen, J.2
Bi, H.3
Rose, J.A.4
-
12
-
-
0036530772
-
Elitist multi-objective genetic algorithm: NSGA-II
-
Deb, K., Pratap, A., Agarwal, S., Meyarivan, T., Fast, A., 2000. Elitist multi-objective genetic algorithm: NSGA-II. IEEE Trans. Evol. Comput. 6, 182-197.
-
(2000)
IEEE Trans. Evol. Comput.
, vol.6
, pp. 182-197
-
-
Deb, K.1
Pratap, A.2
Agarwal, S.3
Meyarivan, T.4
Fast, A.5
-
13
-
-
84931462011
-
Controlled elitist nondominated sorting genetic algorithms for better convergence
-
Deb, K., Pratap, A., Meyarivan, T., 2001. Controlled elitist nondominated sorting genetic algorithms for better convergence. In: Proceedings of the 1st International Conference Evolutionary Multicriterion Optimization (EMO), pp. 284-298.
-
(2001)
Proceedings of the 1st International Conference Evolutionary Multicriterion Optimization (EMO)
, pp. 284-298
-
-
Deb, K.1
Pratap, A.2
Meyarivan, T.3
-
14
-
-
0034652140
-
Molecular computation: RNA solutions to chess problems
-
Faulhammer, D., Cukras, A. R., Lipton, R. J., Landweber, L. F., 2000. Molecular computation: RNA solutions to chess problems. Proc. Natl. Acad. Sci. USA 97, 1385-1389.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 1385-1389
-
-
Faulhammer, D.1
Cukras, A.R.2
Lipton, R.J.3
Landweber, L.F.4
-
15
-
-
4344604921
-
DNA sequence generator- A program for the construction of DNA sequences
-
Feldkamp, U., Saghafi, S., Banzhaf, W., Rauhe, H., 2001. DNA sequence generator- A program for the construction of DNA sequences. In: Proceedings of the 7th International Workshop DNA Based Computers, pp. 179-188.
-
(2001)
Proceedings of the 7th International Workshop DNA Based Computers
, pp. 179-188
-
-
Feldkamp, U.1
Saghafi, S.2
Banzhaf, W.3
Rauhe, H.4
-
16
-
-
0346780462
-
DNA computing at surfaces: Four base mismatch word design
-
Frutos, A. G., Thiel, A. J., Condon, A. E., Smith, L. M., Corn, R. M., 1997. DNA computing at surfaces: four base mismatch word design. In: Proceedings of the 3rd DIMACS Workshop DNA Based Computers, p. 238.
-
(1997)
Proceedings of the 3rd DIMACS Workshop DNA Based Computers
, pp. 238
-
-
Frutos, A.G.1
Thiel, A.J.2
Condon, A.E.3
Smith, L.M.4
Corn, R.M.5
-
18
-
-
0032752789
-
Automated constraint based nucleotide sequence selection for DNA computation
-
Hartemink, A. J., Gifford, D. K., Khodor, J., 1998. Automated constraint based nucleotide sequence selection for DNA computation. In: Proceedings of the 4th DIMACS Workshop DNA Based Computers, pp. 227-235.
-
(1998)
Proceedings of the 4th DIMACS Workshop DNA Based Computers
, pp. 227-235
-
-
Hartemink, A.J.1
Gifford, D.K.2
Khodor, J.3
-
19
-
-
33645602294
-
From RNA secondary structure to coding theory: A combinatorial approach
-
Heitsch, C. E., Condon, A. E., Hoos, H. H., 2002. From RNA secondary structure to coding theory: a combinatorial approach. In: Proceedings of the 8th International Workshop DNA Based Computers, pp. 215-228.
-
(2002)
Proceedings of the 8th International Workshop DNA Based Computers
, pp. 215-228
-
-
Heitsch, C.E.1
Condon, A.E.2
Hoos, H.H.3
-
21
-
-
84860898848
-
DNA sequence design for DNA computation based on binary particle swarm optimization
-
Ibrahim, Z., Khalid, N. K., Buyamin, S., Ibrahim, I., Mukred, J. A. A., Yusof, Z. M., Mohamad, M. S., Mokhtar, N., Saaid, M. F. M., Engelbrecht, A., 2012. DNA sequence design for DNA computation based on binary particle swarm optimization. Int. J. Innovative Comp. Inf. Control 8(5B), 3441-3450.
-
(2012)
Int. J. Innovative Comp. Inf. Control
, vol.8
, Issue.5 B
, pp. 3441-3450
-
-
Ibrahim, Z.1
Khalid, N.K.2
Buyamin, S.3
Ibrahim, I.4
Mukred, J.A.A.5
Yusof, Z.M.6
Mohamad, M.S.7
Mokhtar, N.8
Saaid, M.F.M.9
Engelbrecht, A.10
-
22
-
-
75149134664
-
A survey: Algorithms simulating bee swarm intelligence
-
Karaboga, D., Akay, B., 2009. A survey: algorithms simulating bee swarm intelligence. Artif. Intell. Rev. 31, 61-85.
-
(2009)
Artif. Intell. Rev.
, vol.31
, pp. 61-85
-
-
Karaboga, D.1
Akay, B.2
-
23
-
-
50249158612
-
A model to optimize DNA sequences based on particle swarm pptimization
-
Khalid, N. K., Kurniawanl, T. B., Ibrahim, Z., Yusof, Z. M., Khalid, M., Engelbrecht, A. P., 2008. A model to optimize DNA sequences based on particle swarm pptimization. In: Proceedings of the 2nd Asia International Conference on Modeling and Simulation, pp. 534-539.
-
(2008)
Proceedings of the 2nd Asia International Conference on Modeling and Simulation
, pp. 534-539
-
-
Khalid, N.K.1
Kurniawanl, T.B.2
Ibrahim, Z.3
Yusof, Z.M.4
Khalid, M.5
Engelbrecht, A.P.6
-
24
-
-
84901404865
-
The pareto archived evolution strategy: A new baseline algorithm for pareto multiobjective optimization
-
Knowles, J., Corne, D., 1999. The pareto archived evolution strategy: a new baseline algorithm for pareto multiobjective optimization. In: Proceedings of the Congress on Evolutionary Computation (CEC), pp. 98-105.
-
(1999)
Proceedings of the Congress on Evolutionary Computation (CEC)
, pp. 98-105
-
-
Knowles, J.1
Corne, D.2
-
25
-
-
50249121961
-
Evaluation of ordering methods for DNA sequence design based on ant colony system
-
Kurniawan, T. B., Khalid, N. K., Ibrahim, Z., Khalid, M., Middendorf, M., 2008. Evaluation of ordering methods for DNA sequence design based on ant colony system. In: Proceedings of the 2nd Asia International Conference on Modeling and Simulation, pp. 905-910.
-
(2008)
Proceedings of the 2nd Asia International Conference on Modeling and Simulation
, pp. 905-910
-
-
Kurniawan, T.B.1
Khalid, N.K.2
Ibrahim, Z.3
Khalid, M.4
Middendorf, M.5
-
26
-
-
77951104982
-
Sequence design for direct-proportional length-based DNA computing using populationbased ant colony optimization
-
Kurniawan, T. B., Khalid, N. K., Ibrahim, Z., Abidin, M. S. Z., Khalid, M., 2009. Sequence design for direct-proportional length-based DNA computing using populationbased ant colony optimization. In: Proceedings of the ICROS-SICE International Joint Conference, pp. 1486-1491.
-
(2009)
Proceedings of the ICROS-SICE International Joint Conference
, pp. 1486-1491
-
-
Kurniawan, T.B.1
Khalid, N.K.2
Ibrahim, Z.3
Abidin, M.S.Z.4
Khalid, M.5
-
27
-
-
0004017796
-
-
Erlbaum Ed., W. H. Freeman & Co, San Francisco, CA, USA
-
Lindman, H. R., 1974. In: Erlbaum (Ed.), Analysis of Variance in Complex Experimental Designs. W. H. Freeman & Co, San Francisco, CA, USA.
-
(1974)
Analysis of Variance in Complex Experimental Designs
-
-
Lindman, H.R.1
-
28
-
-
0344686478
-
DNA sequence design based on template strategy
-
Liu, W., Wang, S., Gao, L., Zhang, F., Xu, J., 2003. DNA sequence design based on template strategy. J. Chem. Inf. Comput. Sci. 43, 2014-2018.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 2014-2018
-
-
Liu, W.1
Wang, S.2
Gao, L.3
Zhang, F.4
Xu, J.5
-
29
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
Lucia Jr., J. Santa, 1998. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Nat. Acad. Sci. USA 95, 1460-1465.
-
(1998)
Proc. Nat. Acad. Sci. USA
, vol.95
, pp. 1460-1465
-
-
Lucia Jr., J.S.1
-
30
-
-
0012617125
-
On combinatorial DNA word design
-
Marathe, A., Condon, A. E., Corn, R. M., 1999. On combinatorial DNA word design. In: Proceedings of the 5th DIMACS Workshop DNA Based Computers, pp. 75-89.
-
(1999)
Proceedings of the 5th DIMACS Workshop DNA Based Computers
, pp. 75-89
-
-
Marathe, A.1
Condon, A.E.2
Corn, R.M.3
-
31
-
-
84857861266
-
A modified computational model of ant colony system in DNA sequence design
-
Mustaza, S. M., Abidin, A. F. Z., Ibrahim, Z., Shamsudin, M. A., Husain, A. R., Mukred, J. A. A., 2011. A modified computational model of ant colony system in DNA sequence design. In: Proceedings of the IEEE Student Conference on Research and Development (SCOReD), pp. 169-173.
-
(2011)
Proceedings of the IEEE Student Conference on Research and Development (SCOReD)
, pp. 169-173
-
-
Mustaza, S.M.1
Abidin, A.F.Z.2
Ibrahim, Z.3
Shamsudin, M.A.4
Husain, A.R.5
Mukred, J.A.A.6
-
32
-
-
0037683090
-
DNA library design for molecular computation
-
Penchovsky, R., Ackermann, J., 2003. DNA library design for molecular computation. J. Comput. Bio. 10(2), 215-229.
-
(2003)
J. Comput. Bio.
, vol.10
, Issue.2
, pp. 215-229
-
-
Penchovsky, R.1
Ackermann, J.2
-
33
-
-
4344671649
-
PUNCH: An evolutionary algorithm for optimizing bit set selestion
-
Ruben, A. J., Freeland, S. J., Landweber, L., 2001. PUNCH: an evolutionary algorithm for optimizing bit set selestion. In: Proceedings of the 7th InternationalWorkshop DNA Based Computers, pp. 260-270.
-
(2001)
Proceedings of the 7th InternationalWorkshop DNA Based Computers
, pp. 260-270
-
-
Ruben, A.J.1
Freeland, S.J.2
Landweber, L.3
-
35
-
-
84901393008
-
Evolutionary sequence generation for reliable DNA computing
-
Shin, S.-Y, Kim, D.-M., Lee, I.-H., Zhang, B.-T., 2002. Evolutionary sequence generation for reliable DNA computing. In: Proceedings of the Congress on Evolutionary Computation (CEC), pp. 79-84.
-
(2002)
Proceedings of the Congress on Evolutionary Computation (CEC)
, pp. 79-84
-
-
Shin, S.-Y.1
Kim, D.-M.2
Lee, I.-H.3
Zhang, B.-T.4
-
36
-
-
17744396167
-
Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing
-
Shin, S.-Y, Lee, I.-H., Kim, D., Zhang, B.-T., 2005. Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing. IEEE Trans. Evolut. Comput. 9(2), 143-158.
-
(2005)
IEEE Trans. Evolut. Comput.
, vol.9
, Issue.2
, pp. 143-158
-
-
Shin, S.-Y.1
Lee, I.-H.2
Kim, D.3
Zhang, B.-T.4
-
37
-
-
17744373720
-
Developing support system for sequence design in DNA computing
-
Tanaka, F., Nakatsugawa, M., Yamamoto, M., Shiba, T., Ohuchi, A., 2011. Developing support system for sequence design in DNA computing. In: Proceedings of the 7th International Workshop DNA Based Computers, pp. 340-349.
-
(2011)
Proceedings of the 7th International Workshop DNA Based Computers
, pp. 340-349
-
-
Tanaka, F.1
Nakatsugawa, M.2
Yamamoto, M.3
Shiba, T.4
Ohuchi, A.5
-
38
-
-
84901429463
-
Toward a general-purpose sequence design system in DNA computing
-
Tanaka, F., Nakatsugawa, M., Yamamoto, M., Shiba, T., Ohuchi, A., 2002. Toward a general-purpose sequence design system in DNA computing. In: Proceedings of the Congress on Evolutionary Computation (CEC), pp. 73-78.
-
(2002)
Proceedings of the Congress on Evolutionary Computation (CEC)
, pp. 73-78
-
-
Tanaka, F.1
Nakatsugawa, M.2
Yamamoto, M.3
Shiba, T.4
Ohuchi, A.5
-
39
-
-
34249029916
-
Multiobjective optimization and hybrid evolutionary algorithm to solve constrained optimization problems
-
Wang, Y, Cai, Z., Guo, G., Zhou, Y, 2007. Multiobjective optimization and hybrid evolutionary algorithm to solve constrained optimization problems. IEEE Trans. Syst. Man Cybern. B Cybern. 37(3), 560-575.
-
(2007)
IEEE Trans. Syst. Man Cybern. B Cybern.
, vol.37
, Issue.3
, pp. 560-575
-
-
Wang, Y.1
Cai, Z.2
Guo, G.3
Zhou, Y.4
-
40
-
-
73949105197
-
DNA codewords design using the improved NSGA-II algorithms
-
Wang, Y, Shen, Y; Zhang, X., Cui, G., 2009. DNA codewords design using the improved NSGA-II algorithms. In: Proceedings of the 4th International Conference on Bio-Inspired Computing, pp. 48-52.
-
(2009)
Proceedings of the 4th International Conference on Bio-inspired Computing
, pp. 48-52
-
-
Wang, Y.1
Shen, Y.2
Zhang, X.3
Cui, G.4
-
41
-
-
0025944267
-
DNA probes: Applications of the principles of nucleic acid hybridization
-
Wetmur, J. G., 1991. DNA probes: applications of the principles of nucleic acid hybridization. Crit. Rev. Biochem. Mol. Biol. 26, 227-259.
-
(1991)
Crit. Rev. Biochem. Mol. Biol.
, vol.26
, pp. 227-259
-
-
Wetmur, J.G.1
-
43
-
-
50949122424
-
Research on the DNA sequence design based on GA/PSO algorithms
-
Xu, C, Zhang, Q., Wang, B., Zhang, R., 2008. Research on the DNA sequence design based on GA/PSO algorithms. In: Proceedings of the 2nd International Conference on Bioinformatics and Biomedical Engineering, pp. 816-819.
-
(2008)
Proceedings of the 2nd International Conference on Bioinformatics and Biomedical Engineering
, pp. 816-819
-
-
Xu, C.1
Zhang, Q.2
Wang, B.3
Zhang, R.4
-
45
-
-
79251559115
-
DNA word set design based on minimum free energy
-
Zhang, Q., Wang, B., Wei, X., Fang, X., Zhou, C, 2010. DNA word set design based on minimum free energy. IEEE Trans. Nanobiosci. 9(4), 273-277.
-
(2010)
IEEE Trans. Nanobiosci.
, vol.9
, Issue.4
, pp. 273-277
-
-
Zhang, Q.1
Wang, B.2
Wei, X.3
Fang, X.4
Zhou, C.5
-
46
-
-
0034199979
-
Comparison of multiobjective evolutionary algorithms: Empirical results
-
Zitzler, E., Deb, K., Thiele, L., 2000. Comparison of multiobjective evolutionary algorithms: empirical results. Evol. Comput. 8(2), 173-195.
-
(2000)
Evol. Comput.
, vol.8
, Issue.2
, pp. 173-195
-
-
Zitzler, E.1
Deb, K.2
Thiele, L.3
|