Evaluation of ordering methods for DNA sequence design based on ant colony system

Proceedings - 2nd Asia International Conference on Modelling and Simulation, AMS 2008

Volumn , Issue , 2008, Pages 905-910

  Kurniawan, Tri Basuki ^a   Khalid, Noor Khafifah ^a   Ibrahim, Zuwairie ^a   Khalid, Marzuki ^a   Middendorf, Martin ^b  

^a UNIVERSITI TEKNOLOGI MALAYSIA   (Malaysia)

^b UNIVERSITY OF LEIPZIG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA PARTICLE SPECTROMETERS; ASSET MANAGEMENT; COMPUTER SYSTEMS; DNA; GENES; GENETIC PROGRAMMING; NUCLEIC ACIDS; OPTIMIZATION; ORGANIC ACIDS; PARTICLE SPECTROMETERS;

ANT COLONY SYSTEM; ANT SYSTEM; ANT-COLONY OPTIMIZATION; BASE PAIRINGS; COMPUTATION PROCESSES; DNA BASES; DNA COMPUTING; DNA SEQUENCE DESIGN; INTERNATIONAL CONFERENCES; MODELLING AND SIMULATION; MOLECULAR COMPUTATIONS; NEAREST NEIGHBORS;

DNA SEQUENCES;

EID: 50249121961     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/AMS.2008.37     Document Type: Conference Paper

References (7)

1. Adleman, L.M, Molecular computation of solutions to combinatorial problem, Science-266, 1994, 1021-1024.
2. A.Brenneman, A.Condon, Strand design for biomolecular computation, Theory: Comput. Sci, vol. 287, 2002.
3. S.Y. Shin, I.H. Lee, D. Kim, B.T. Zhang, "Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing", IEEE Transaction on Evolutionary Computation, Vol. 9, No. 2, 2005.
4. U. Feldkamp, S. Saghafi, W. Banzhaf, and H. Rauhe, "DNA sequence generator - A program for the construction of DNA sequences", Proceedings of the 7th International Workshop DNA Based Computers, 2001, pp. 179-188
5. SantaLucia,J. Jr. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1998, 1460-1465
6. F. Tanaka, A. Kameda, M.Yamamoto, and A. Ohuchi, Design of nucleic acid sequences for DNA computing based on a thermodynamic approach, Nucleic Acids Reseach, vil 33, 2005, 903-911.
7. M. Dorigo, Luca. M.G, Ant Colony System: A cooperative learning approach to the Traveling Salesman Problem, IEEE Trans. Evol, Comput, vol. 1, 1997.