-
1
-
-
0028114541
-
Molecular computation of solutions to combinatorial problems
-
L. Adleman, "Molecular computation of solutions to combinatorial problems," Science, vol. 266, pp. 1021-1024, 1994.
-
(1994)
Science
, vol.266
, pp. 1021-1024
-
-
Adleman, L.1
-
3
-
-
0030646490
-
A DNA based implementation of an evolutionary search for good encodings for DNA computation
-
R. Deaton, R. C. Murphy, J. A. Rose, M. Garzon, D. R. Franceschetti, and S. E. Stevens, Jr., "A DNA based implementation of an evolutionary search for good encodings for DNA computation," in Proc. 1997 IEEE Int. Conf. Evol. Comput., 1997, pp. 267-272.
-
(1997)
Proc. 1997 IEEE Int. Conf. Evol. Comput.
, pp. 267-272
-
-
Deaton, R.1
Murphy, R.C.2
Rose, J.A.3
Garzon, M.4
Franceschetti, D.R.5
Stevens Jr., S.E.6
-
4
-
-
34447137266
-
Information transfer through hybridization reaction in DNA based computing
-
R. Deaton, M. Garzon, R. Murphy, D. Franceschetti, J. Rose, and S. Stevens, Jr., "Information transfer through hybridization reaction in DNA based computing," in Proc. 2nd Annu. Genetic Program. Conf., 1997, pp. 463-471.
-
(1997)
Proc. 2nd Annu. Genetic Program. Conf.
, pp. 463-471
-
-
Deaton, R.1
Garzon, M.2
Murphy, R.3
Franceschetti, D.4
Rose, J.5
Stevens Jr., S.6
-
5
-
-
0002116263
-
A new metric for DNA computing
-
M. Garzon, P. Neathery, R. Deaton, R. Murphy, D. Franceschetti, and S. Stevens, Jr., "A new metric for DNA computing," in Proc. 2nd Annu. Genetic Programm. Conf. (GP-97), pp. 472-487.
-
Proc. 2nd Annu. Genetic Programm. Conf. (GP-97)
, pp. 472-487
-
-
Garzon, M.1
Neathery, P.2
Deaton, R.3
Murphy, R.4
Franceschetti, D.5
Stevens Jr., S.6
-
6
-
-
9444234400
-
Applying error correcting codes to DNA computing
-
D. H. Wood, "Applying error correcting codes to DNA computing," in Proc. 4th DIMACSWorkshop DNA Based Comput., 1998, pp. 109-110.
-
(1998)
Proc. 4th DIMACSWorkshop DNA Based Comput.
, pp. 109-110
-
-
Wood, D.H.1
-
7
-
-
2442543499
-
Automated constraintbased nucleotide sequence selection for DNA computation
-
A. J. Hartemink, D. K. Gifford, and J. Khodor, "Automated constraintbased nucleotide sequence selection for DNA computation," in Proc. 4th DIMACS Workshop DNA Based Comput., 1998, pp. 287-297.
-
(1998)
Proc. 4th DIMACS Workshop DNA Based Comput.
, pp. 287-297
-
-
Hartemink, A.J.1
Gifford, D.K.2
Khodor, J.3
-
8
-
-
0005340252
-
Thermodynamics simulation of deoxyoligonucleotide hybridizes for DNA computation
-
A. J. Hartemink and D. K. Gifford, "Thermodynamics simulation of deoxyoligonucleotide hybridizes for DNA computation," in Proc. 3rd DIMACS Meeting DNA Based Comput., 1997, pp. 23-25.
-
(1997)
Proc. 3rd DIMACS Meeting DNA Based Comput.
, pp. 23-25
-
-
Hartemink, A.J.1
Gifford, D.K.2
-
9
-
-
84901393008
-
Evolutionary sequence generation for reliable DNA computing
-
S. Y. Shin and D. Min, "Evolutionary sequence generation for reliable DNA computing," in Proc. 2002 Congr. Evol. Comput. (CEC'02), vol. 1, pp. 79-84.
-
Proc. 2002 Congr. Evol. Comput. (CEC'02)
, vol.1
, pp. 79-84
-
-
Shin, S.Y.1
Min, D.2
-
10
-
-
34748838388
-
Research on optimizing the template frame in DNA computing
-
L. Wenbin, C. H. Lichun, and B. Baogang, "Research on optimizing the template frame in DNA computing," Acta Electronica Sinica, vol. 35, no. 8, pp. 1490-1494, 2007.
-
(2007)
Acta Electronica Sinica
, vol.35
, Issue.8
, pp. 1490-1494
-
-
Wenbin, L.1
Lichun, C.H.2
Baogang, B.3
-
11
-
-
0034814981
-
On combinatorial DNA word design
-
A. Marathe, A. Condon, and R. Corn, "On combinatorial DNA word design," J. Comput. Biol., vol. l8, no. 3, pp. 201-220, 2001.
-
(2001)
J. Comput. Biol.
, vol.18
, Issue.3
, pp. 201-220
-
-
Marathe, A.1
Condon, A.2
Corn, R.3
-
12
-
-
0035427115
-
Errorcorrecting codes over an alphabet of four elements
-
T. B. Galina, A. E. Brouwer, S. N. Kapralov, and R. J. Patric, "Errorcorrecting codes over an alphabet of four elements," Designs, Codes, Cryptography, vol. 23, no. 3, pp. 333-342, 2001.
-
(2001)
Designs, Codes, Cryptography
, vol.23
, Issue.3
, pp. 333-342
-
-
Galina, T.B.1
Brouwer, A.E.2
Kapralov, S.N.3
Patric, R.J.4
-
13
-
-
33745030385
-
Superposition based on Watson-Crick-like complementarity
-
P. Bottoni, A. Labella, V. Manca, and V. Mitrana, "Superposition based onWatson-Crick-like complementarity," Theory Comput. Syst., vol. 39, pp. 503-524, 2006.
-
(2006)
Theory Comput. Syst.
, vol.39
, pp. 503-524
-
-
Bottoni, P.1
Labella, A.2
Manca, V.3
Mitrana, V.4
-
14
-
-
35248838409
-
Stochastic local search algorithms for DNA word design
-
D. C. Tulpan, H. H. Hoos, and A. Condon, "Stochastic local search algorithms for DNA word design," in Proc. 8th DNA Based Comput., 2002, vol. 2568, pp. 229-241.
-
(2002)
Proc. 8th DNA Based Comput.
, vol.2568
, pp. 229-241
-
-
Tulpan, D.C.1
Hoos, H.H.2
Condon, A.3
-
15
-
-
38349127283
-
Improved lower bounds for constant gc-content DNA codes
-
Y. M. Chee and S. Ling, "Improved lower bounds for constant GC-content DNA codes," IEEE Trans. Inf. Theory, vol. 54, pp. 391-394, 2008.
-
(2008)
IEEE Trans. Inf. Theory
, vol.54
, pp. 391-394
-
-
Chee, Y.M.1
Ling, S.2
-
16
-
-
7044249181
-
Hybrid randomized neighborhoods improve stochastic local search for DNA code design
-
D. C. Tulpan and H. H. Hoos, "Hybrid randomized neighborhoods improve stochastic local search for DNA code design," in Proc. Advances Artif. Intell., 16th Conf. Can. Soc. Comput. Studies Intelligence, 2003, vol. 2671, pp. 418-433.
-
(2003)
Proc. Advances Artif. Intell., 16th Conf. Can. Soc. Comput. Studies Intelligence
, vol.2671
, pp. 418-433
-
-
Tulpan, D.C.1
Hoos, H.H.2
-
17
-
-
49949097802
-
DNA sequence design by dynamic neighborhood searches
-
S. Kawashimo, H. Ono, K. Sadakane, and M. Yamashita, "DNA sequence design by dynamic neighborhood searches," in Proc. DNA Comput., 2006, vol. 4287, pp. 157-171.
-
(2006)
Proc. DNA Comput.
, vol.4287
, pp. 157-171
-
-
Kawashimo, S.1
Ono, H.2
Sadakane, K.3
Yamashita, M.4
-
18
-
-
3042524729
-
Bounds for DNA codes with constant gc-content
-
O. D. King, "Bounds for DNA codes with constant GC-content," J. Combinatorics, vol. 10, pp. 1-13, 2003.
-
(2003)
J. Combinatorics
, vol.10
, pp. 1-13
-
-
King, O.D.1
-
19
-
-
16344392360
-
Linear constructions for DNA codes
-
P. Gaborit and O. D. King, "Linear constructions for DNA codes," Theory. Comput., vol. 334, pp. 99-113, 2005.
-
(2005)
Theory. Comput.
, vol.334
, pp. 99-113
-
-
Gaborit, P.1
King, O.D.2
-
20
-
-
52549096704
-
Construction of constant gc-content DNA codes via a variable neighbourhood search algorithm
-
R. Montemanni and D. H. Smith, "Construction of constant GC-content DNA codes via a variable neighbourhood search algorithm," J. Math. Model. Algorithms, vol. 7, no. 3, pp. 311-326, 2008.
-
(2008)
J. Math. Model. Algorithms
, vol.7
, Issue.3
, pp. 311-326
-
-
Montemanni, R.1
Smith, D.H.2
-
21
-
-
49949096745
-
Dynamic neighborhood searches for thermodynamically designing DNA sequence
-
S. Kawashimo, H. Ono, K. Sadakane, and M. Yamashita, "Dynamic neighborhood searches for thermodynamically designing DNA sequence," in Proc. 13th Int. Meet. DNA Comput., 2008, vol. 4848, pp. 130-139.
-
(2008)
Proc. 13th Int. Meet. DNA Comput.
, vol.4848
, pp. 130-139
-
-
Kawashimo, S.1
Ono, H.2
Sadakane, K.3
Yamashita, M.4
-
22
-
-
11844254846
-
Secondary structure prediction of interacting RNA molecules
-
M. Andronescu, Z. Zhang, and A. Condon, "Secondary structure prediction of interacting RNA molecules," J. Mol. Biol. vol. 345, no. 5, pp. 987-1001, 2005 [Online]. Available: www.rnasoft.ca/download.html
-
(2005)
J. Mol. Biol.
, vol.345
, Issue.5
, pp. 987-1001
-
-
Andronescu, M.1
Zhang, Z.2
Condon, A.3
-
23
-
-
24744461715
-
Thermodynamically based DNA strand design
-
D. C. Tulpan, M. Andronescu, S. B. Chang, M. R. Shortreed, A. Condon, H. H. Hoos, and L. M. Smith, "Thermodynamically based DNA strand design," Nucleic Acids Res., vol. 33, no. 15, pp. 4951-4964, 2005.
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.15
, pp. 4951-4964
-
-
Tulpan, D.C.1
Andronescu, M.2
Chang, S.B.3
Shortreed, M.R.4
Condon, A.5
Hoos, H.H.6
Smith, L.M.7
-
24
-
-
77049102423
-
Search of optimal codes for DNA computing
-
M. Garzon, V. Phan, S. Roy, and A. Neel, "Search of optimal codes for DNA computing," in Proc. DNA Comput., 2006, vol. 4287, pp. 143-156.
-
(2006)
Proc. DNA Comput.
, vol.4287
, pp. 143-156
-
-
Garzon, M.1
Phan, V.2
Roy, S.3
Neel, A.4
-
25
-
-
49949119338
-
DNA codes based on stem similarities between DNA sequences
-
A. D'yachkov, A. Macula, V. Rykov, and V. Ufimtsev, "DNA codes based on stem similarities between DNA sequences," in Proc. 13th Int. Meet. DNA Comput., 2008, vol. 4848, pp. 146-151.
-
(2008)
Proc. 13th Int. Meet. DNA Comput.
, vol.4848
, pp. 146-151
-
-
D'Yachkov, A.1
MacUla, A.2
Rykov, V.3
Ufimtsev, V.4
-
26
-
-
26444506834
-
A thermodynamic approach to designing structure-free combinatorial DNA word sets
-
M. R. Shortreed, S. B. Chang, D. G. Hong, M. Phillips, B. Campion, D. C. Tulpan, M. Andronescu, A. Condon, H. H. Hoos, and L. M. Smith, "A thermodynamic approach to designing structure-free combinatorial DNA word sets," Nucleic Acids Res., vol. 33, no. 15, pp. 4965-4977, 2005.
-
(2005)
Nucleic Acids Res.
, vol.33
, Issue.15
, pp. 4965-4977
-
-
Shortreed, M.R.1
Chang, S.B.2
Hong, D.G.3
Phillips, M.4
Campion, B.5
Tulpan, D.C.6
Andronescu, M.7
Condon, A.8
Hoos, H.H.9
Smith, L.M.10
|