Research on the DNA sequence design based on GA/PSO algorithms

2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE 2008

Volumn , Issue , 2008, Pages 816-819

  Xu, Chunxia ^a   Zhang, Qiang ^a   Wang, Bin ^a   Zhang, Rui ^a  

^a DALIAN UNIVERSITY   (China)

Author keywords

DNA sequences; GA PSO algorithms; Multi objective optimization

Indexed keywords

BIOCOMMUNICATIONS; BIOINFORMATICS; BIOMEDICAL ENGINEERING; COMPUTATIONAL METHODS; COMPUTER NETWORKS; COMPUTER SIMULATION; DIESEL ENGINES; DNA; GENES; GENETIC ALGORITHMS; GENETIC PROGRAMMING; INFORMATION SCIENCE; MULTIOBJECTIVE OPTIMIZATION; NUCLEIC ACIDS; OPTIMIZATION; ORGANIC ACIDS;

DNA SEQUENCE DESIGN; GA/PSO ALGORITHMS; INTERNATIONAL CONFERENCES;

DNA SEQUENCES;

EID: 50949122424     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICBBE.2008.200     Document Type: Conference Paper

References (16)

1. L. Adleman, "Molecular Computation of Solution to Combinatorial problems," Science, vol. 66(11), pp. 1021-1024, 1994.
2. W. B. Liu, S. D. Wang, J. Xu, "Research on the Encoding Method of DNA Computing," Computer Engineering and Applications. Vol. 27(1), pp. 18-21, 2003. in Chinese.
3. C. C. Maley, "DNA computation: Theory, practice, and prospects," Evol. Comput., vol. 6(3), pp. 201-229, 1998.
4. R. Deaton., R. C. Murphy, M. Garzon., D. R . Franceshetti, and S. E. Stevens Jr., "Good Encodings for DNA-based Solutions to Combinatorial Problems," Proceedings of 2nd DIMACS Workshop on DNA Based Computers, 1996, pp. 159-171.
5. R. Deaton, M. Garzon, "Thermodynamic Constraints on DNA-based Computing," in Computing with Bio-Molecus Theory and Experiments. ed. G. Paun, Spinger-Verlag: Singapore, 1998, pp. 138-152.
6. R. Deaton., D. R. Franceschetti, M. Garzon, J. A. Rose, R. C. Murphy, and S. E. Stevens, "Information transfer through hybridization reaction in DNA based computing.," Proceedings of the Second Annual Conference, Stanford University, 1997, July 13-16. [Morgan Kaufmann, San Francisco, 463-471].
7. M. Garzon, P. Neathery, R. J. Deaton, R. C. Murphy, D. R. Franceschetti, and S. E. Stevens Jr., "A new metric for DNA Computing.," Proceedings of the 2nd Annual Genetic Programming Conference, 1997, pp. 472-487.
8. A. Marathe, A. E. Condon, and R. M. Corn, "On combinatorial DNA word design," In Proceedings of 5th DIMACS Workshop on DNA Based Computers, 1999, pp. 75-89.
9. A. G. Frutos et al., "Demonstration of a Word Design Strategy for DNA Computing on Surface," Nucleic AcidsRes, vol. 25, pp. 4748-4757, 1997.
10. A. J. Hartemink, D. K. Gifford, and J. Khodor, "Automated constraintbased nucleotide sequence selection for DNA computation," in Proceedings of 4th DIMACS, Workshop on DNA Based Computers, 1998, pp.227-235.
11. M. Arita, A. Nishikawa, M. Hagiya, K. Komiya, H. Gouzu, and K. Sakamoto, "Improving sequence Design for DNA computing," In Proceedings of Genetic and Evolutionary Computation Conference 2000, pp. .875-882.
12. S. Y. Shin, D. M. Kim, I. H. Lee, and B. T. Zhang, "Evolutionary sequence generation for reliable DNA computing," Congress on Evolutionary Computation, vol. 1, pp. 79-84, 2002.
13. Y. L. Wang, Y. P. Wang, "Based on mix GA-PSO nerve network algorithm," Computer Engineering and Applications, vol. 43(2), pp. 38-40, 2007. in Chinese.
14. L. Peng, J. P. Zhang et al.., "Reactive Power Optimization of Hybrid AC/HVDC Power System Based on Genetic Algorithm and Particle Swarm Optimization," High Voltage Engineering vol. 32, no. 4, 2006,. in Chinese.
15. R. Deaton, R. C. Murphy, J. A. Rose, M. Garzon, D. R. Franceschetti, and S. E. Stevens Jr., "A DNA Based Implementation of an Evolutionary Search for Good Encodings for DNA Computation," in Proceedings of the 1997 IEEE International Conference on Evolutionary Computation, 1997, pp. 267-272.
16. F. Tanaka, M. Nakatsugawa, and M. Yamamoto et al., "Developing support system for sequence design in DNA computing," In Preliminary Proceedings of 7th international Workshop on DNA-Based Computers, 2001, pp. 340-349.