Sequence design for direct-proportional length-based DNA computing using population-based ant colony optimization

ICCAS-SICE 2009 - ICROS-SICE International Joint Conference 2009, Proceedings

Volumn , Issue , 2009, Pages 1486-1491

  Kuurniawan, Tri Basuki ^a   Khalid, Noor Khafifah ^a   Ibrahim, Zuwairie ^a   Abidin, Mohammad Shukri Zainal ^a   Khalid, Marzuki ^a  

^a UNIVERSITI TEKNOLOGI MALAYSIA   (Malaysia)

Author keywords

Direct proportional length based DNA computing; DNA sequence design; Population based ant colony optimization

Indexed keywords

ANT-COLONY OPTIMIZATION; DNA SEQUENCE DESIGN; DNA-COMPUTING; OBJECTIVE FUNCTIONS; SEQUENCE DESIGNS; TEST METHOD;

ALGORITHMS; ARTIFICIAL INTELLIGENCE; CALCULATIONS; DESIGN; DNA; GENES; GENETIC PROGRAMMING; OPTIMIZATION;

DNA SEQUENCES;

EID: 77951104982     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (9)

1. Z. Ibrahim, Y. Tsuboi, and O. Ono, "Hybridization-ligation versus Parallel Overlap Assembly: An Experimental Comparison of Initial Pool Generation for Direct-Proportional Length-Based DNA Computer", IEEE Transaction on NanoBioscience, vol. 5(2), pp. 103-109, 2006.
2. Z. Ibrahim, T. B. Kurniawan, M. Khalid, and O. Ono, "A DNA Sequence Design for Direct-Proportional Length-Based DNA Computing using DNASequence-Generator", Proceeding of the Second International Conference on Innovative Computing, Information and Control, 2007.
3. T. B. Kurniawan, Z. Ibrahim, N. K. Khalid, M. Khalid, and N. H. Sarmin, "A Generate-and-Test Approach for DNA Sequence Design of the Direct-Proportional Length-Based DNA Computing", Proceedings of 2008 Student Conference on Research and Development, pp. 142.1-142.6, 2008.
4. M. G. Guntsch, and M. Middendorf, "A Population based ACO to Dynamic Optimization Problems." Lecture Notes in Computer Science, vol.2279, pp. 78-80, 2002.
5. M. G. Guntsch, and M. Middendorf, "Applying Population based ACO to Dynamic Optimization Problems", Lecture Notes in Computer Science, vol.2463, pp. 111-122, 2003.
6. M. Dorigo and M.G. Luca, "Ant Colony System: A Cooperative Learning Approach to the Traveling Salesman Problem", Transaction on Evolutionary Computation, vol.1(1), pp. 1-24, 1997.
7. S. Y. Shin, I. H. Lee, D. Kim, B.T. Zhang, "Multiobjective evolutionary optimization of DNA sequences for reliable DNA computing," IEEE Transaction on Evolutionary Computation, vol.9(2), pp. 143-158, 2005.
8. Z. Ibrahim, T. B. Kurniawan, N. K. Khalid, and M. Khalid, "Implementation of Ant Colony System for DNA Sequence Optimization", Proceeding of The Fourteenth International Symposium on Artificial Life and Robotics, pp. 712-715, 2009.
9. SantaLucia. "A unified view of polymer, dumbell, and oligonucleotide DNA nearest-neighbour thermodynamics", Proceeding Nationall Academy of Science, USA, pp. 1460-1465, 1998. (Pubitemid 28103414)