Thermodynamic analysis of osmolyte effect on thermal stability of ribonuclease A in terms of water activity

Biophysical Chemistry

Volumn 185, Issue , 2014, Pages 19-24

  Miyawaki, Osato ^a   Dozen, Michiko ^a   Nomura, Kaede ^a  

^a ISHIKAWA PREFECTURAL UNIVERSITY   (Japan)

Author keywords

Free energy for protein unfolding; m Value; Osmolyte; RNase; Thermal unfolding of protein; Water activity

Indexed keywords

PROTEIN; RIBONUCLEASE A; WATER;

ARTICLE; ENTHALPY; HYDRATION; MELTING POINT; OSMOLYTE; PRIORITY JOURNAL; PROTEIN UNFOLDING; SOLUTE; THERMODYNAMICS; THERMOSTABILITY; WATER STRESS;

FREE ENERGY FOR PROTEIN UNFOLDING; M-VALUE; OSMOLYTE; RNASE; THERMAL UNFOLDING OF PROTEIN; WATER ACTIVITY;

ANIMALS; BETAINE; CATTLE; ENZYME STABILITY; GLYCINE; INOSITOL; METHYLAMINES; OSMOLAR CONCENTRATION; PROLINE; PROTEIN UNFOLDING; RIBONUCLEASE, PANCREATIC; SARCOSINE; TAURINE; THERMODYNAMICS; WATER;

EID: 84888334720     PISSN: 03014622     EISSN: 18734200     Source Type: Journal    
DOI: 10.1016/j.bpc.2013.10.004     Document Type: Article

References (52)

1. P.H. Yancey, M.E. Clark, S.C. Hand, R.D. Bowlus, and G.N. Somero Living with water stress: evolution of osmol (Pubitemid 13283134)
2. P.H. Yancey Organic osmolytes as compatible, metabolic and counteracting cytoprotectants in high osmolarity and other stresses J. Exp. Biol. 208 2005 2819 2830 (Pubitemid 41265173)
3. M.M. Santoro, Y. Liu, S.M.A. Khan, L.X. Hou, and D.W. Bolen Increased thermal stability of proteins in the presence of naturally occurring osmolytes Biochemistry 31 1992 5278 5283
4. D.W. Bolen Effects of naturally occurring osmolytes on protein stability and solubility: issues important in protein crystallization Methods 34 2004 312 322 (Pubitemid 39119815)
5. J. Rösgen, B.M. Pettitt, and D.W. Bolen Protein folding, stability, and solvation structure in osmolyte solutions Biophys. J. 89 2005 2988 2997 (Pubitemid 41636055)
6. P. Wu, and D.W. Bolen Osmolyte-induced protein folding free energy changes Struct. Funct. Bioinformatics 63 2006 290 296
7. M. Auton, A.C.M. Ferreon, and D.W. Bolen Metrics that differentiate the origins of osmolyte effects on protein stability: a test of the surface tension proposal J. Mol. Biol. 361 2006 983 992 (Pubitemid 44192588)
8. M. Auton, and D.W. Bolen Predicting the energetics of osmolyte-induced protein folding/unfolding PNAS 102 2005 15065 15068 (Pubitemid 41513335)
9. L.M.F. Holthauzen, and D.W. Bolen Mixed osmolytes: the degree to which one osmolyte affects the protein stabilizing ability of another Protein Sci. 16 2007 293 298 (Pubitemid 46155777)
10. C. Tanford Extension of the theory of linked functions to incorporate the effects of protein hydration J. Mol. Biol. 39 1969 539 544
11. J. Wyman Linked functions and reciprocal effects in hemoglobin: a second look Adv. Protein Chem. 19 1964 223 286
12. S.N. Timasheff Water as ligand: preferential binding and exclusion of denaturants in protein unfolding Biochemistry 31 1992 9857 9864
13. S.N. Timasheff The control of protein stability and association by weak interactions with water: how do solvents affect these processes Annu. Rev. Biophys. Biomol. Struct. 22 1993 67 97 (Pubitemid 23180317)
14. S.N. Timasheff In disperse solution, "osmotic stress" is a restricted case of preferential interactions PNAS 95 1998 7363 7367 (Pubitemid 28293257)
15. A. Ben-Naim Inversion of the Kirkwood-Buff theory of solutions: application to the water-ethanol system J. Chem. Phys. 67 1977 4884 4890
16. R. Chitra, and P.E. Smith Molecular association in solution: a Kirkwood-Buff analysis of sodium chloride, ammonium sulfate, guanidinium chloride, urea, and 2,2,2-trifluoroethanol in water J. Phys. Chem. B 106 2002 1491 1500 (Pubitemid 35276118)
17. S. Shimizu Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments PNAS 101 2004 1195 1199 (Pubitemid 38182665)
18. S. Shimizu Estimation of excess solvation numbers of water and cosolvents from preferential interaction and volumetric experiments J. Chem. Phys. 120 2004 4989 4990
19. S. Shimizu, and D.J. Smith Preferential hydration and the exclusion of cosolvents from protein surfaces J. Chem. Phys. 121 2004 1148 1154
20. S. Shimizu, and N. Matsubayashi Preferential hydration of proteins: a Kirkwood-Buff approach Chem. Phys. Lett. 420 2006 518 522 (Pubitemid 43332880)
21. S. Shimizu Molecular origin of the cosolvent-induced changes in the thermal stability of proteins Chem. Phys. Lett. 514 2011 156 158
22. J. Rösgen, B.M. Pettiitt, and D.W. Bolen An analysis of the molecular origin of osmolyte-dependent protein stability Protein Sci. 16 2007 733 743 (Pubitemid 46507002)
23. M. Auton, D.W. Bolen, and J. Rösgen Structural thermodynamics of protein preferential solvation: osmolyte solvation of proteins, amino acids, and peptides Proteins 73 2008 802 813
24. M.F. Colombo, D.C. Rau, and V.A. Parsegian Protein salvation in allosteric regulation: a water effect on hemoglobin Science 256 1992 655 659
25. V.A. Parsegian, R.P. Rand, and D.C. Rau Osmotic stress, crowding, preferential hydration, and binding: a comparison of perspectives PNAS 97 2000 3987 3992 (Pubitemid 30226074)
26. W.T. Jenkins Three solutions of the protein solubility problem Protein Sci. 7 1998 376 382 (Pubitemid 28092859)
27. O. Miyawaki Hydration state change of proteins upon unfolding in sugar solutions Biochim. Biophys. Acta 1774 2007 928 935 (Pubitemid 46977844)
28. O. Miyawaki Thermodynamic analysis of protein unfolding in aqueous solutions as a multisite reaction of protein with water and solute molecules Biophys. Chem. 144 2009 46 52
29. O. Miyawaki, and M. Tatsuno Thermodynamic analysis of alcohol effect on thermal stability of proteins J. Biosci. Bioeng. 111 2011 198 203
30. J.J. Kozak, W.S. Knight, and W. Kauzmann Solute-solute interactions in aqueous solutions J. Chem. Phys. 48 1968 675 690
31. O. Miyawaki, A. Saito, T. Matsuo, and K. Nakamura Activity and activity coefficient of water in aqueous solutions and their relationships with solution structure parameters Biosci. Biotechnol. Biochem. 61 1997 466 469 (Pubitemid 27213578)
32. R.D. Domenico, R. Lavecchia, and A. Ottavi Theoretic information approach to protein stabilization by solvent engineering AIChE J 46 2000 1478 1489 (Pubitemid 30602688)
33. H.O. Hammou, I.M. Plaza del Pino, and J.M. Sanchez-Ruiz Hydration changes upon protein unfolding: cosolvent effect analysis New J. Chem. 1998 1453 1461 (Pubitemid 128702022)
34. J.C. Lee, and S.N. Timasheff The stabilization of proteins by sucrose J. Biol. Chem. 256 1981 7193 7201
35. G.C. Na Interaction of calf skin collagen with glycerol: linked function analysis Biochemistry 25 1986 967 973
36. G. Xie, and S.N. Timasheff The thermodynamic mechanism of protein stabilization by trehalose Biophys. Chem. 64 1997 25 43 (Pubitemid 27148654)
37. J.K. Kaushik, and R. Bhat Why is trehalose an exceptional protein stabilizer? J. Biol. Chem. 278 2003 26458 26465
38. D, the Gibbs energy of stabilization of proteins at different pH values Biophys. Chem. 117 2005 1 12 (Pubitemid 41116845)
39. D, the Gibbs energy of stabilization of the protein at different pH values: is the sum effect of monosaccharide individually additive in a mixture? Biophys. Chem. 138 2008 120 129
40. T.F. O'Connor, P.G. Debenedetti, and J.F. Carbeck Stability of proteins in the presence of carbohydrates; experiments and modeling using scaled particle theory Biophys. Chem. 127 2007 51 63
41. R.F. Greene, and N. Pace Urea and guanidine hydrochloride denaturation of ribonuclease, lysozyme, α-chymotrypsin, and β-lactoglobulin J. Biol. Chem. 249 1974 5388 5393
42. C.N. Pace Determination and analysis of urea and guanidine hydrochloride denaturation curves Methods Enzymol. 131 1986 266 280 (Pubitemid 16002205)
43. C. Hu, J.M. Sturtevant, J.A. Thomson, R.E. Erickson, and C.N. Pace Thermodynamics of ribonuclease T1 denaturation Biochemistry 31 1992 4876 4882
44. J.M. Scholtz, D. Barrick, E.J. York, J.M. Stewart, and R.L. Baldwin Urea unfolding of peptide helices as a model for interpreting protein unfolding Proc. Natl. Acad. Sci. U. S. A. 92 1995 185 189
45. J.S. Smith, and J.M. Scholtz Guanidine hydrochloride unfolding of peptide helices: separation of denaturant and salt effects Biochemistry 35 1996 7292 7297 (Pubitemid 26182123)
46. R.M. Ionescu, and M.R. Eftink Global analysis of the acid-induced and urea-induced unfolding of staphylococcal nuclease and two of its variants Biochemistry 36 1997 1129 1140 (Pubitemid 27076374)
47. V.M. Shelton, T.R. Sosnick, and T. Pan Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding Biochemistry 38 1999 16831 16839
48. I. Haque, A. Islam, R. Singh, A.A. Moosavi-Movahedi, and F. Ahmad Stability of proteins in the presence of polyols estimated from their guanidinium chloride-induced transition curves at different pH values and 25 C Biophys. Chem. 119 2006 224 233 (Pubitemid 43202270)
49. N. Hirota, K. Mizuno, and Y. Goto Group additive contributions to the alcohol-induced α-helix formation of melittin: implication for the mechanism of the alcohol effects on proteins J. Mol. Biol. 275 1998 365 378 (Pubitemid 28030010)
50. J.A. Schellman Protein stability in mixed solvents: a balance of contact interaction and excluded volume Biophys. J. 85 2003 108 125 (Pubitemid 36753621)
51. G.I. Makhatadze Thermodynamics of protein interactions with urea and guanidine hydrochloride J. Phys. Chem. B 103 1999 4781 4785
52. K. Sasahara, P. McPhie, and A.P. Minton Effect of dextran on protein stability and conformation attributed to macromolecule crowding J. Mol. Biol. 326 2003 1227 1237 (Pubitemid 36263394)