메뉴 건너뛰기




Volumn 9, Issue 11, 2013, Pages

The Regulation of Trypanosome Gene Expression by RNA-Binding Proteins

Author keywords

[No Author keywords available]

Indexed keywords

RNA BINDING PROTEIN; ZINC FINGER PROTEIN;

EID: 84888236056     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1003680     Document Type: Article
Times cited : (94)

References (32)
  • 1
    • 79955619183 scopus 로고    scopus 로고
    • Trans-splicing in trypanosomes: machinery and its impact on the parasite transcriptome
    • Michaeli S, (2011) Trans-splicing in trypanosomes: machinery and its impact on the parasite transcriptome. Future Microbiol 6: 459-474.
    • (2011) Future Microbiol , vol.6 , pp. 459-474
    • Michaeli, S.1
  • 2
    • 80054730384 scopus 로고    scopus 로고
    • The role of the 5′-3′ exoribonuclease XRNA in transcriptome-wide mRNA degradation
    • Manful T, Fadda A, Clayton C, (2011) The role of the 5′-3′ exoribonuclease XRNA in transcriptome-wide mRNA degradation. RNA 17: 2039-2047.
    • (2011) RNA , vol.17 , pp. 2039-2047
    • Manful, T.1    Fadda, A.2    Clayton, C.3
  • 3
    • 78951493869 scopus 로고    scopus 로고
    • The four trypanosomatid eIF4E homologues fall into two separate groups, with distinct features in primary sequence and biological properties
    • Freire E, Dhalia R, Mouraa D, da Costa Lima T, Lima R, et al. (2011) The four trypanosomatid eIF4E homologues fall into two separate groups, with distinct features in primary sequence and biological properties. Mol Biochem Parasitol 176: 25-36.
    • (2011) Mol Biochem Parasitol , vol.176 , pp. 25-36
    • Freire, E.1    Dhalia, R.2    Mouraa, D.3    da Costa Lima, T.4    Lima, R.5
  • 4
    • 67449093457 scopus 로고    scopus 로고
    • Evolutionary changes in the Leishmania eIF4F complex involve variations in the eIF4E-eIF4G interactions
    • Yoffe Y, Leger M, Zinoviev A, Zuberek J, Darzynkiewicz E, et al. (2009) Evolutionary changes in the Leishmania eIF4F complex involve variations in the eIF4E-eIF4G interactions. Nucleic Acids Res 37: 3243-3253.
    • (2009) Nucleic Acids Res , vol.37 , pp. 3243-3253
    • Yoffe, Y.1    Leger, M.2    Zinoviev, A.3    Zuberek, J.4    Darzynkiewicz, E.5
  • 5
    • 84879289671 scopus 로고    scopus 로고
    • The roles of 3′-exoribonucleases and the exosome in trypanosome mRNA degradation
    • Fadda A, Färber V, Droll D, Clayton C, (2013) The roles of 3′-exoribonucleases and the exosome in trypanosome mRNA degradation. RNA 19: 937-947.
    • (2013) RNA , vol.19 , pp. 937-947
    • Fadda, A.1    Färber, V.2    Droll, D.3    Clayton, C.4
  • 6
    • 79960647138 scopus 로고    scopus 로고
    • Alba-domain proteins of Trypanosoma brucei are cytoplasmic RNA-binding proteins that interact with the translation machinery
    • doi:10.1371/journal.pone.0022463
    • Mani J, Güttinger A, Schimanski B, Heller M, Acosta-Serrano A, et al. (2011) Alba-domain proteins of Trypanosoma brucei are cytoplasmic RNA-binding proteins that interact with the translation machinery. PLoS ONE 6: e22463 doi: 10.1371/journal.pone.0022463.
    • (2011) PLoS ONE , vol.6
    • Mani, J.1    Güttinger, A.2    Schimanski, B.3    Heller, M.4    Acosta-Serrano, A.5
  • 7
    • 41449099992 scopus 로고    scopus 로고
    • Control and regulation of gene expression: quantitative analysis of the expression of phosphoglycerate kinase in bloodstream form Trypanosoma brucei
    • Haanstra J, Stewart M, Luu V-D, van Tuijl A, Westerhoff H, et al. (2008) Control and regulation of gene expression: quantitative analysis of the expression of phosphoglycerate kinase in bloodstream form Trypanosoma brucei. J Biol Chem 283: 2495-2507.
    • (2008) J Biol Chem , vol.283 , pp. 2495-2507
    • Haanstra, J.1    Stewart, M.2    Luu, V.-D.3    van Tuijl, A.4    Westerhoff, H.5
  • 8
    • 70049084728 scopus 로고    scopus 로고
    • Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle
    • doi:10.1371/journal.ppat.1000565
    • Archer SK, van Luu D, de Queiroz R, Brems S, Clayton CE, (2009) Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle. PLoS Pathog 5: e1000565 doi: 10.1371/journal.ppat.1000565.
    • (2009) PLoS Pathog , vol.5
    • Archer, S.K.1    van Luu, D.2    de Queiroz, R.3    Brems, S.4    Clayton, C.E.5
  • 9
    • 84877805892 scopus 로고    scopus 로고
    • Nucleolar proteins regulate stage-specific gene expression and ribosomal RNA maturation in Trypanosoma brucei
    • Schumann Burkard G, Kaser S, de Araujo PR, Schimanski B, Naguleswaran A, et al. (2013) Nucleolar proteins regulate stage-specific gene expression and ribosomal RNA maturation in Trypanosoma brucei. Mol Microbiol 88: 827-840.
    • (2013) Mol Microbiol , vol.88 , pp. 827-840
    • Schumann Burkard, G.1    Kaser, S.2    de Araujo, P.R.3    Schimanski, B.4    Naguleswaran, A.5
  • 10
    • 56549109640 scopus 로고    scopus 로고
    • An RNAi screen of the RRM-domain proteins of Trypanosoma brucei
    • Wurst M, Robles A, Po J, Luu V, Brems S, et al. (2009) An RNAi screen of the RRM-domain proteins of Trypanosoma brucei. Mol Biochem Parasitol 163: 61-65.
    • (2009) Mol Biochem Parasitol , vol.163 , pp. 61-65
    • Wurst, M.1    Robles, A.2    Po, J.3    Luu, V.4    Brems, S.5
  • 11
    • 79955602637 scopus 로고    scopus 로고
    • High throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome
    • Alsford S, Turner D, Obado S, Sanchez-Flores A, Glover L, et al. (2011) High throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome. Genome Res 21: 915-924.
    • (2011) Genome Res , vol.21 , pp. 915-924
    • Alsford, S.1    Turner, D.2    Obado, S.3    Sanchez-Flores, A.4    Glover, L.5
  • 12
    • 84873815885 scopus 로고    scopus 로고
    • Differential localization of the two T. brucei poly(A) binding proteins to the nucleus and RNP granules suggests binding to distinct mRNA pools
    • doi:10.1371/journal.pone.0054004
    • Kramer S, Bannerman-Chukualim B, Ellis L, Boulde nE, Kelly S, et al. (2013) Differential localization of the two T. brucei poly(A) binding proteins to the nucleus and RNP granules suggests binding to distinct mRNA pools. PLoS ONE 8: e54004 doi: 10.1371/journal.pone.0054004.
    • (2013) PLoS ONE , vol.8
    • Kramer, S.1    Bannerman-Chukualim, B.2    Ellis, L.3    Boulde, E.4    Kelly, S.5
  • 13
    • 36849018485 scopus 로고    scopus 로고
    • The small trypanosome RNA-binding proteins TbUBP1 and TbUBP2 influence expression of F box protein mRNAs in bloodstream trypanosomes
    • Hartmann C, Benz C, Brems S, Ellis L, Luu V-D, et al. (2007) The small trypanosome RNA-binding proteins TbUBP1 and TbUBP2 influence expression of F box protein mRNAs in bloodstream trypanosomes. Eukaryotic Cell 6: 1964-1978.
    • (2007) Eukaryotic Cell , vol.6 , pp. 1964-1978
    • Hartmann, C.1    Benz, C.2    Brems, S.3    Ellis, L.4    Luu, V.-D.5
  • 14
    • 60549085443 scopus 로고    scopus 로고
    • Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes
    • Noe G, De Gaudenzi J, Frasch A, (2008) Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes. BMC Mol Biol 9: 107.
    • (2008) BMC Mol Biol , vol.9 , pp. 107
    • Noe, G.1    De Gaudenzi, J.2    Frasch, A.3
  • 15
    • 84867678330 scopus 로고    scopus 로고
    • The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism
    • Das A, Morales R, Banday M, Garcia S, Hao L, et al. (2012) The essential polysome-associated RNA-binding protein RBP42 targets mRNAs involved in Trypanosoma brucei energy metabolism. RNA 18: 1968-1983.
    • (2012) RNA , vol.18 , pp. 1968-1983
    • Das, A.1    Morales, R.2    Banday, M.3    Garcia, S.4    Hao, L.5
  • 16
    • 49249093497 scopus 로고    scopus 로고
    • The RNA-binding protein TbDRBD3 regulates the stability of a specific subset of mRNAs in trypanosomes
    • Estévez A, (2008) The RNA-binding protein TbDRBD3 regulates the stability of a specific subset of mRNAs in trypanosomes. Nucleic Acids Res 36: 4573-4586.
    • (2008) Nucleic Acids Res , vol.36 , pp. 4573-4586
    • Estévez, A.1
  • 17
    • 62549158711 scopus 로고    scopus 로고
    • Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism
    • Stern M, Gupta S, Salmon-Divon M, Haham T, Barda O, et al. (2009) Multiple roles for polypyrimidine tract binding (PTB) proteins in trypanosome RNA metabolism. RNA 15: 648-665.
    • (2009) RNA , vol.15 , pp. 648-665
    • Stern, M.1    Gupta, S.2    Salmon-Divon, M.3    Haham, T.4    Barda, O.5
  • 18
    • 84870680092 scopus 로고    scopus 로고
    • Developmental progression to infectivity in Trypanosoma brucei triggered by an RNA-binding protein
    • Kolev NG, Ramey-Butler K, Cross GA, Ullu E, Tschudi C, (2012) Developmental progression to infectivity in Trypanosoma brucei triggered by an RNA-binding protein. Science 338: 1352-1353.
    • (2012) Science , vol.338 , pp. 1352-1353
    • Kolev, N.G.1    Ramey-Butler, K.2    Cross, G.A.3    Ullu, E.4    Tschudi, C.5
  • 19
    • 84857355078 scopus 로고    scopus 로고
    • Expression of the RNA Recognition Motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei
    • Wurst M, Selinger B, Jha B, Klein C, Queiroz R, et al. (2012) Expression of the RNA Recognition Motif protein RBP10 promotes a bloodstream-form transcript pattern in Trypanosoma brucei. Mol Microbiol 83: 1048-1063.
    • (2012) Mol Microbiol , vol.83 , pp. 1048-1063
    • Wurst, M.1    Selinger, B.2    Jha, B.3    Klein, C.4    Queiroz, R.5
  • 20
    • 84880542947 scopus 로고    scopus 로고
    • The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability
    • Gupta SK, Kosti I, Plaut G, Pivko A, Tkacz ID, et al. (2013) The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability. Nucleic Acids Res.
    • (2013) Nucleic Acids Res
    • Gupta, S.K.1    Kosti, I.2    Plaut, G.3    Pivko, A.4    Tkacz, I.D.5
  • 21
    • 0035803397 scopus 로고    scopus 로고
    • A novel CCCH protein which modulates differentiation of Trypanosoma brucei to its procyclic form
    • Hendriks EF, Robinson DR, Hinkins M, Matthews KR, (2001) A novel CCCH protein which modulates differentiation of Trypanosoma brucei to its procyclic form. EMBO J 20: 6700-6711.
    • (2001) EMBO J , vol.20 , pp. 6700-6711
    • Hendriks, E.F.1    Robinson, D.R.2    Hinkins, M.3    Matthews, K.R.4
  • 22
    • 22644440097 scopus 로고    scopus 로고
    • Disruption of the developmental programme of Trypanosoma brucei by genetic ablation of TbZFP1, a differentiation-enriched CCCH protein
    • Hendriks EF, Matthews KR, (2005) Disruption of the developmental programme of Trypanosoma brucei by genetic ablation of TbZFP1, a differentiation-enriched CCCH protein. Mol Microbiol 57: 706-716.
    • (2005) Mol Microbiol , vol.57 , pp. 706-716
    • Hendriks, E.F.1    Matthews, K.R.2
  • 23
    • 84860189120 scopus 로고    scopus 로고
    • The post-transcriptional trans-acting regulator, TbZFP3, co-ordinates transmission-stage enriched mRNAs in Trypanosoma brucei
    • Walrad P, Capewell P, Fenn K, Matthews K, (2011) The post-transcriptional trans-acting regulator, TbZFP3, co-ordinates transmission-stage enriched mRNAs in Trypanosoma brucei. Nucleic Acids Res 40: 2869-2883.
    • (2011) Nucleic Acids Res , vol.40 , pp. 2869-2883
    • Walrad, P.1    Capewell, P.2    Fenn, K.3    Matthews, K.4
  • 24
    • 61449182673 scopus 로고    scopus 로고
    • Differential trypanosome surface coat regulation by a CCCH protein that co-associates with procyclin mRNA cis-elements
    • doi:10.1371/journal.ppat.1000317
    • Walrad P, Paterou A, Acosta-Serrano A, Matthews K, (2009) Differential trypanosome surface coat regulation by a CCCH protein that co-associates with procyclin mRNA cis-elements. PLoS Pathog 5: e1000317 doi: 10.1371/journal.ppat.1000317.
    • (2009) PLoS Pathog , vol.5
    • Walrad, P.1    Paterou, A.2    Acosta-Serrano, A.3    Matthews, K.4
  • 25
    • 79958010505 scopus 로고    scopus 로고
    • A zinc finger protein, TbZC3H20, stabilises two developmentally regulated mRNAs in trypanosomes
    • Ling A, Trotter J, Hendriks E, (2011) A zinc finger protein, TbZC3H20, stabilises two developmentally regulated mRNAs in trypanosomes. J Biol Chem 286: 20152-20162.
    • (2011) J Biol Chem , vol.286 , pp. 20152-20162
    • Ling, A.1    Trotter, J.2    Hendriks, E.3
  • 26
    • 84876860902 scopus 로고    scopus 로고
    • Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein
    • doi:10.1371/journal.ppat.1003286
    • Droll D, Minia I, Fadda A, Singh A, Stewart M, et al. (2013) Post-transcriptional regulation of the trypanosome heat shock response by a zinc finger protein. PLoS Pathog 9: e1003286 doi: 10.1371/journal.ppat.1003286.
    • (2013) PLoS Pathog , vol.9
    • Droll, D.1    Minia, I.2    Fadda, A.3    Singh, A.4    Stewart, M.5
  • 27
    • 80053047597 scopus 로고    scopus 로고
    • Is there a classical nonsense-mediated decay pathway in trypanosomes?
    • doi:10.1371/journal.pone.0025112
    • Delhi P, Queiroz R, Inchaustegui D, Carrington M, Clayton C, (2011) Is there a classical nonsense-mediated decay pathway in trypanosomes? PLoSOne 6: e25112 doi: 10.1371/journal.pone.0025112.
    • (2011) PLoSOne , vol.6
    • Delhi, P.1    Queiroz, R.2    Inchaustegui, D.3    Carrington, M.4    Clayton, C.5
  • 28
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia N, Ghaemmaghami S, Newman J, Weissman J, (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324: 218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.1    Ghaemmaghami, S.2    Newman, J.3    Weissman, J.4
  • 30
    • 84861997955 scopus 로고    scopus 로고
    • The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts
    • Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y, et al. (2012) The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol Cell 46: 674-690.
    • (2012) Mol Cell , vol.46 , pp. 674-690
    • Baltz, A.G.1    Munschauer, M.2    Schwanhausser, B.3    Vasile, A.4    Murakawa, Y.5
  • 32
    • 78149342808 scopus 로고    scopus 로고
    • A novel mRNA affinity purification technique for the identification of interacting proteins and transcripts in ribonucleoprotein complexes
    • Slobodin B, Gerst J, (2010) A novel mRNA affinity purification technique for the identification of interacting proteins and transcripts in ribonucleoprotein complexes. RNA 16: 2277-2290.
    • (2010) RNA , vol.16 , pp. 2277-2290
    • Slobodin, B.1    Gerst, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.