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Volumn 5, Issue 8, 2009, Pages

Trypanosoma brucei PUF9 regulates mRNAs for proteins involved in replicative processes over the cell cycle

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MYC PROTEIN; NUCLEAR PROTEIN; RNA BINDING PROTEIN; RNA BINDING PROTEIN LIGKA; RNA BINDING PROTEIN PNT1; RNA BINDING PROTEIN PNT2; RNA BINDING PROTEIN PUF9; UNCLASSIFIED DRUG; PROTOZOAL PROTEIN;

EID: 70049084728     PISSN: 15537366     EISSN: 15537374     Source Type: Journal    
DOI: 10.1371/journal.ppat.1000565     Document Type: Article
Times cited : (93)

References (46)
  • 1
    • 0018223459 scopus 로고
    • Regulation of dihydrofolate reductase gene expression in mouse fibroblasts during the transition from the resting to growing state
    • Johnson LF, Fuhrman CL, Wiedemann LM (1978) Regulation of dihydrofolate reductase gene expression in mouse fibroblasts during the transition from the resting to growing state. J Cell Physiol 97: 397-1306
    • (1978) J Cell Physiol , vol.97 , pp. 397-1306
    • Johnson, L.F.1    Fuhrman, C.L.2    Wiedemann, L.M.3
  • 2
    • 0016702101 scopus 로고
    • Regulation of cell cycle stage-specific transcription of histone genes from chromatin by non-histone chromosomal proteins
    • Stein G, Park W, Thrall C, Mans R, Stein J (1975) Regulation of cell cycle stage-specific transcription of histone genes from chromatin by non-histone chromosomal proteins. Nature 257: 764-767.
    • (1975) Nature , vol.257 , pp. 764-767
    • Stein, G.1    Park, W.2    Thrall, C.3    Mans, R.4    Stein, J.5
  • 3
    • 0033600853 scopus 로고    scopus 로고
    • Effect of differential polyadenylation and cell growth phase on dihydrofolate reductase mRNA stability
    • Noe V, Ciudad CJ, Chasin LA (1999) Effect of differential polyadenylation and cell growth phase on dihydrofolate reductase mRNA stability. J Biol Chem 274: 27807-27814. (Pubitemid 129527835)
    • (1999) Journal of Biological Chemistry , vol.274 , Issue.39 , pp. 27807-27814
    • Noe, V.1    Ciudad, C.J.2    Chasin, L.A.3
  • 4
    • 0021259402 scopus 로고
    • Dihydrofolate reductase gene expression in cultured mouse cells is regulated by transcript stabilization in the nucleus
    • Leys EJ, Crouse GF, Kellems RE (1984) Dihydrofolate reductase gene expression in cultured mouse cells is regulated by transcript stabilization in the nucleus. J Cell Biol 99: 180-187. (Pubitemid 14096881)
    • (1984) Journal of Cell Biology , vol.99 , Issue.1 I , pp. 180-187
    • Leys, E.J.1    Crouse, G.F.2    Kellems, R.E.3
  • 7
    • 0037090528 scopus 로고    scopus 로고
    • Life without transcriptional control? from fly to man and back again
    • Clayton CE (2002) Life without transcriptional control? From fly to man and back again. Embo J 21: 1881-1888.
    • (2002) Embo J , vol.21 , pp. 1881-1888
    • Clayton, C.E.1
  • 8
    • 0032904299 scopus 로고    scopus 로고
    • Trypanosoma brucei spp. development in the tsetse fly: Characterization of the post-mesocyclic stages in the foregut and proboscis
    • DOI 10.1017/S0031182099004217
    • Van Den Abbeele J, Claes Y, van Bockstaele D, Le Ray D, Coosemans M (1999) Trypanosoma brucei spp. development in the tsetse fly: characterization of the post-mesocyclic stages in the foregut and proboscis. Parasitology 118 ( Pt 5): 469-478. (Pubitemid 29224616)
    • (1999) Parasitology , vol.118 , Issue.5 , pp. 469-478
    • Van Den Abbeele, J.1    Claes, Y.2    Van Bockstaele, D.3    Le Ray, D.4    Coosemans, M.5
  • 10
    • 0029956388 scopus 로고    scopus 로고
    • Sequences within the 5' untranslated region regulate the levels of a kinetoplast DNA topoisomerase mRNA during the cell cycle
    • Pasion SG, Hines JC, Ou X, Mahmood R, Ray DS (1996) Sequences within the 5′ untranslated region regulate the levels of a kinetoplast DNA topoisomerase mRNA during the cell cycle. Mol Cell Biol 16: 6724-6735. (Pubitemid 26389731)
    • (1996) Molecular and Cellular Biology , vol.16 , Issue.12 , pp. 6724-6735
    • Pasion, S.G.1    Hines, J.C.2    Ou, X.3    Mahmood, R.4    Ray, D.S.5
  • 11
    • 0030750216 scopus 로고    scopus 로고
    • Cell cycle regulation of RPA1 transcript levels in the trypanosomatid Crithidia fasciculata
    • Brown LM, Ray DS (1997) Cell cycle regulation of RPA1 transcript levels in the trypanosomatid Crithidia fasciculata. Nucleic Acids Res 25: 3281-3289.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3281-3289
    • Brown, L.M.1    Ray, D.S.2
  • 12
    • 0042733049 scopus 로고    scopus 로고
    • Sequence elements in both the intergenic space and the 3′ untranslated region of the Crithidia fasciculata KAP3 gene are required for cell cycle regulation of KAP3 mRNA
    • Avliyakulov NK, Hines JC, Ray DS (2003) Sequence elements in both the intergenic space and the 3′ untranslated region of the Crithidia fasciculata KAP3 gene are required for cell cycle regulation of KAP3 mRNA. Eukaryot Cell 2: 671-677.
    • (2003) Eukaryot Cell , vol.2 , pp. 671-677
    • Avliyakulov, N.K.1    Hines, J.C.2    Ray, D.S.3
  • 13
    • 23044509170 scopus 로고    scopus 로고
    • Assigning functions to genes: Identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements
    • DOI 10.1093/nar/gki742
    • Zick A, Onn I, Bezalel R, Margalit H, Shlomai J (2005) Assigning functions to genes: identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements. Nucleic Acids Res 33: 4235-4242. (Pubitemid 41487282)
    • (2005) Nucleic Acids Research , vol.33 , Issue.13 , pp. 4235-4242
    • Zick, A.1    Onn, I.2    Bezalel, R.3    Margalit, H.4    Shlomai, J.5
  • 14
    • 0036289532 scopus 로고    scopus 로고
    • Eukaryotic mRNPs may represent posttranscriptional operons
    • Keene JD, Tenenbaum SA (2002) Eukaryotic mRNPs may represent posttranscriptional operons. Mol Cell 9: 1161-1167.
    • (2002) Mol Cell , vol.9 , pp. 1161-1167
    • Keene, J.D.1    Tenenbaum, S.A.2
  • 15
    • 45249105994 scopus 로고    scopus 로고
    • The structural mechanics of cell division in Trypanosoma brucei
    • DOI 10.1042/BST0360421
    • Vaughan S, Gull K (2008) The structural mechanics of cell division in Trypanosoma brucei. Biochem Soc Trans 36: 421-424. (Pubitemid 351839346)
    • (2008) Biochemical Society Transactions , vol.36 , Issue.3 , pp. 421-424
    • Vaughan, S.1    Gull, K.2
  • 16
    • 30944446613 scopus 로고    scopus 로고
    • Cell cycle-dependent localization and properties of a second mitochondrial DNA ligase in Crithidia fasciculata
    • Sinha KM, Hines JC, Ray DS (2006) Cell cycle-dependent localization and properties of a second mitochondrial DNA ligase in Crithidia fasciculata. Eukaryot Cell 5: 54-61.
    • (2006) Eukaryot Cell , vol.5 , pp. 54-61
    • Sinha, K.M.1    Hines, J.C.2    Ray, D.S.3
  • 17
    • 18044389729 scopus 로고    scopus 로고
    • Mitochondrial DNA Ligases of Trypanosoma brucei
    • DOI 10.1128/EC.4.4.765-774.2005
    • Downey N, Hines JC, Sinha KM, Ray DS (2005) Mitochondrial DNA ligases of Trypanosoma brucei. Eukaryot Cell 4: 765-774. (Pubitemid 40600430)
    • (2005) Eukaryotic Cell , vol.4 , Issue.4 , pp. 765-774
    • Downey, N.1    Hines, J.C.2    Sinha, K.M.3    Ray, D.S.4
  • 19
    • 0037162703 scopus 로고    scopus 로고
    • Modular recognition of RNA by a human Pumilio-homology domain
    • DOI 10.1016/S0092-8674(02)00873-5
    • Wang X, McLachlan J, Zamore PD, Hall TM (2002) Modular recognition of RNA by a human pumilio-homology domain. Cell 110: 501-512. (Pubitemid 35232293)
    • (2002) Cell , vol.110 , Issue.4 , pp. 501-512
    • Wang, X.1    McLachlan, J.2    Zamore, P.D.3    Hall, T.M.T.4
  • 20
    • 0035917508 scopus 로고    scopus 로고
    • Structure of Pumilio reveals similarity between RNA and peptide binding motifs
    • Edwards TA, Pyle SE, Wharton RP, Aggarwal AK (2001) Structure of Pumilio reveals similarity between RNA and peptide binding motifs. Cell 105: 281-289.
    • (2001) Cell , vol.105 , pp. 281-289
    • Edwards, T.A.1    Pyle, S.E.2    Wharton, R.P.3    Aggarwal, A.K.4
  • 21
    • 19344365947 scopus 로고    scopus 로고
    • Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
    • doi:10.1371/journal.pbio.0020079
    • Gerber AP, Herschlag D, Brown PO (2004) Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol 2: e79. doi:10.1371/journal.pbio.0020079.
    • (2004) PLoS Biol , vol.2
    • Gerber, A.P.1    Herschlag, D.2    Brown, P.O.3
  • 22
    • 16544395270 scopus 로고    scopus 로고
    • Site-directed, Ligase-Independent Mutagenesis (SLIM): A single-tube methodology approaching 100% efficiency in 4 h
    • Chiu J, March PE, Lee R, Tillett D (2004) Site-directed, Ligase-Independent Mutagenesis (SLIM): a single-tube methodology approaching 100% efficiency in 4 h. Nucleic Acids Res 32: e174.
    • (2004) Nucleic Acids Res , vol.32
    • Chiu, J.1    March, P.E.2    Lee, R.3    Tillett, D.4
  • 26
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 27
    • 0028361878 scopus 로고
    • Cell cycle-specific induction of an 89 kDa serine/threonine protein kinase activity in Trypanosoma brucei
    • Gale M Jr, Carter V, Parsons M (1994) Cell cycle-specific induction of an 89 kDa serine/threonine protein kinase activity in Trypanosoma brucei. J Cell Sci 107 ( Pt 7): 1825-1832. (Pubitemid 24226433)
    • (1994) Journal of Cell Science , vol.107 , Issue.7 , pp. 1825-1832
    • Gale Jr., M.1    Carter, V.2    Parsons, M.3
  • 28
    • 70049087550 scopus 로고    scopus 로고
    • Standard culture medium allows clonal dilution of Trypanosoma brucei procyclic cells after auto-conditioning
    • Archer SK (2008) Standard culture medium allows clonal dilution of Trypanosoma brucei procyclic cells after auto-conditioning. Mol Biochem Parasitol.
    • (2008) Mol Biochem Parasitol
    • Archer, S.K.1
  • 29
    • 0023205561 scopus 로고
    • A pragmatic approach to the analysis of DNA histograms with a definable G1 peak
    • Watson JV, Chambers SH, Smith PJ (1987) A pragmatic approach to the analysis of DNA histograms with a definable G1 peak. Cytometry 8: 1-8.
    • (1987) Cytometry , vol.8 , pp. 1-8
    • Watson, J.V.1    Chambers, S.H.2    Smith, P.J.3
  • 31
    • 34547662962 scopus 로고    scopus 로고
    • Trawler: De novo regulatory motif discovery pipeline for chromatin immunoprecipitation
    • DOI 10.1038/nmeth1061, PII NMETH1061
    • Ettwiller L, Paten B, Ramialison M, Birney E, Wittbrodt J (2007) Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation. Nat Methods 4: 563-565. (Pubitemid 47214774)
    • (2007) Nature Methods , vol.4 , Issue.7 , pp. 563-565
    • Ettwiller, L.1    Paten, B.2    Ramialison, M.3    Birney, E.4    Wittbrodt, J.5
  • 33
    • 65449138352 scopus 로고    scopus 로고
    • Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei
    • Siegel TN, Hekstra DR, Kemp LE, Figueiredo LM, Lowell JE, et al. (2009) Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei. Genes Dev 23: 1063-1076.
    • (2009) Genes Dev , vol.23 , pp. 1063-1076
    • Siegel, T.N.1    Hekstra, D.R.2    Kemp, L.E.3    Figueiredo, L.M.4    Lowell, J.E.5
  • 34
    • 0026661825 scopus 로고
    • Trypanosoma brucei spliced-leader RNA methylations are required for trans splicing in vivo
    • McNally KP, Agabian N (1992) Trypanosoma brucei spliced-leader RNA methylations are required for trans splicing in vivo. Mol Cell Biol 12: 4844-4851.
    • (1992) Mol Cell Biol , vol.12 , pp. 4844-4851
    • McNally, K.P.1    Agabian, N.2
  • 35
    • 41449087417 scopus 로고    scopus 로고
    • Effect of hydroxyurea on procyclic Trypanosoma brucei: An unconventional mechanism for achieving synchronous growth
    • DOI 10.1128/EC.00369-07
    • Chowdhury AR, Zhao Z, Englund PT (2008) Effect of hydroxyurea on procyclic Trypanosoma brucei: an unconventional mechanism for achieving synchronous growth. Eukaryot Cell 7: 425-428. (Pubitemid 351959709)
    • (2008) Eukaryotic Cell , vol.7 , Issue.2 , pp. 425-428
    • Chowdhury, A.R.1    Zhao, Z.2    Englund, P.T.3
  • 36
    • 59649119963 scopus 로고    scopus 로고
    • Hydroxyurea-induced synchronisation of bloodstream stage Trypanosoma brucei
    • Forsythe GR, McCulloch R, Hammarton TC (2009) Hydroxyurea-induced synchronisation of bloodstream stage Trypanosoma brucei. Mol Biochem Parasitol 164: 131-136.
    • (2009) Mol Biochem Parasitol , vol.164 , pp. 131-136
    • Forsythe, G.R.1    McCulloch, R.2    Hammarton, T.C.3
  • 37
    • 0029120145 scopus 로고
    • Dissociation of nuclear and cytoplasmic cell cycle progression by drugs employed in cell synchronization
    • Urbani L, Sherwood SW, Schimke RT (1995) Dissociation of nuclear and cytoplasmic cell cycle progression by drugs employed in cell synchronization. Exp Cell Res 219: 159-168.
    • (1995) Exp Cell Res , vol.219 , pp. 159-168
    • Urbani, L.1    Sherwood, S.W.2    Schimke, R.T.3
  • 38
    • 52349122355 scopus 로고    scopus 로고
    • Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system
    • doi:10.1371/journal.pone.0003164.
    • Galgano A, Forrer M, Jaskiewicz L, Kanitz A, Zavolan M, et al. (2008) Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS ONE 3: e3164. doi:10.1371/journal.pone.0003164.
    • (2008) PLoS ONE , vol.3
    • Galgano, A.1    Forrer, M.2    Jaskiewicz, L.3    Kanitz, A.4    Zavolan, M.5
  • 39
    • 33645217973 scopus 로고    scopus 로고
    • Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster
    • Gerber AP, Luschnig S, Krasnow MA, Brown PO, Herschlag D (2006) Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc Natl Acad Sci U S A 103: 4487-4492.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 4487-4492
    • Gerber, A.P.1    Luschnig, S.2    Krasnow, M.A.3    Brown, P.O.4    Herschlag, D.5
  • 40
    • 33748784359 scopus 로고    scopus 로고
    • Engineering RNA sequence specificity of Pumilio repeats
    • Cheong CG, Hall TM (2006) Engineering RNA sequence specificity of Pumilio repeats. Proc Natl Acad Sci U S A 103: 13635-13639.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 13635-13639
    • Cheong, C.G.1    Hall, T.M.2
  • 41
    • 0028361303 scopus 로고
    • Kinetoplastidae display naturally occurring ancillary DNA-containing structures
    • DOI 10.1016/0166-6851(94)90084-1
    • Miyahira Y, Dvorak JA (1994) Kinetoplastidae display naturally occurring ancillary DNA-containing structures. Mol Biochem Parasitol 65: 339-349. (Pubitemid 24229078)
    • (1994) Molecular and Biochemical Parasitology , vol.65 , Issue.2 , pp. 339-349
    • Miyahira, Y.1    Dvorak, J.A.2
  • 42
    • 22044434857 scopus 로고    scopus 로고
    • Fellowship of the rings: The replication of kinetoplast DNA
    • DOI 10.1016/j.pt.2005.06.008, PII S1471492205001698
    • Liu B, Liu Y, Motyka SA, Agbo EE, Englund PT (2005) Fellowship of the rings: the replication of kinetoplast DNA. Trends Parasitol 21: 363-369. (Pubitemid 40968137)
    • (2005) Trends in Parasitology , vol.21 , Issue.8 , pp. 363-369
    • Liu, B.1    Liu, Y.2    Motyka, S.A.3    Agbo, E.E.C.4    Englund, P.T.5
  • 43
    • 34250370911 scopus 로고    scopus 로고
    • An essential cell cycle-regulated nucleolar protein relocates to the mitotic spindle where it is involved in mitotic progression in Trypanosoma brucei
    • DOI 10.1074/jbc.M700780200
    • Boucher N, Dacheux D, Giroud C, Baltz T (2007) An essential cell cycle-regulated nucleolar protein relocates to the mitotic spindle where it is involved in mitotic progression in Trypanosoma brucei. J Biol Chem 282: 13780-13790. (Pubitemid 47100500)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.18 , pp. 13780-13790
    • Boucher, N.1    Dacheux, D.2    Giroud, C.3    Baltz, T.4
  • 44
    • 48649087988 scopus 로고    scopus 로고
    • Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei
    • doi: 10.1371/journal.pone.0002354
    • Li Z, Lee JH, Chu F, Burlingame AL, Gunzl A, et al. (2008) Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei. PLoS ONE 3: e2354. doi: 10.1371/journal.pone. 0002354.
    • (2008) PLoS ONE , vol.3
    • Li, Z.1    Lee, J.H.2    Chu, F.3    Burlingame, A.L.4    Gunzl, A.5
  • 45
    • 70049114411 scopus 로고    scopus 로고
    • The phosphoproteome of bloodstream form trypanonosoma brucei, causative agent of African sleeping sickness
    • Nett IR, Martin DM, Miranda-Saavedra D, Lamont D, Barber JD, et al. (2009) The phosphoproteome of bloodstream form trypanonosoma brucei, causative agent of African sleeping sickness. Mol Cell Proteomics 8: 1527-1538.
    • (2009) Mol Cell Proteomics , vol.8 , pp. 1527-1538
    • Nett, I.R.1    Martin, D.M.2    Miranda-Saavedra, D.3    Lamont, D.4    Barber, J.D.5
  • 46
    • 0036860235 scopus 로고    scopus 로고
    • Targeting of a tetracycline-inducible expression system to the transcriptionally silent minichromosomes of Trypanosoma brucei
    • PII S0166685102002384
    • Wickstead B, Ersfeld K, Gull K (2002) Targeting of a tetracycline- inducible expression system to the transcriptionally silent minichromosomes of Trypanosoma brucei. Mol Biochem Parasitol 125: 211-216. (Pubitemid 35449262)
    • (2002) Molecular and Biochemical Parasitology , vol.125 , Issue.1-2 , pp. 211-216
    • Wickstead, B.1    Ersfeld, K.2    Gull, K.3


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