-
1
-
-
0034730140
-
Singular value decomposition for genomewide expression data processing and modeling
-
Aug 29
-
O. Alter, et al., "Singular value decomposition for genomewide expression data processing and modeling, " Proc Natl Acad Sci USA, vol. 97, pp. 10101-6, Aug 29 2000.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10101-10106
-
-
Alter, O.1
-
2
-
-
1542473171
-
Application of independent component analysis to microarrays
-
S. I. Lee and S. Batzoglou, "Application of independent component analysis to microarrays, " Genome Biol, vol. 4, p. R76, 2003.
-
(2003)
Genome Biol
, vol.4
-
-
Lee, S.I.1
Batzoglou, S.2
-
3
-
-
79960564239
-
Unraveling gene regulatory networks from time-resolved gene expression data - A measures comparison study
-
S. Hempel, et al., "Unraveling gene regulatory networks from time-resolved gene expression data - A measures comparison study, " BMC Bioinformatics, vol. 12, p. 292, 2011.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 292
-
-
Hempel, S.1
-
4
-
-
78650901444
-
Gene regulatory networks from multifactorial perturbations using Graphical Lasso: Application to the DREAM4 challenge
-
P. Menendez, et al., "Gene regulatory networks from multifactorial perturbations using Graphical Lasso: Application to the DREAM4 challenge, " PLoS One, vol. 5, p. e14147, 2010.
-
(2010)
PLoS One
, vol.5
-
-
Menendez, P.1
-
5
-
-
0033707946
-
Using Bayesian networks to analyze expression data
-
N. Friedman, et al., "Using Bayesian networks to analyze expression data, " J Comput Biol, vol. 7, pp. 601-20, 2000.
-
(2000)
J Comput Biol
, vol.7
, pp. 601-620
-
-
Friedman, N.1
-
6
-
-
10744226222
-
Computational discovery of gene modules and regulatory networks
-
Nov
-
Z. Bar-Joseph, et al., "Computational discovery of gene modules and regulatory networks, " Nat Biotechnol, vol. 21, pp. 1337-42, Nov 2003.
-
(2003)
Nat Biotechnol
, vol.21
, pp. 1337-1342
-
-
Bar-Joseph, Z.1
-
7
-
-
34147179823
-
Clustering of genes into regulons using integrated modeling-COGRIM
-
G. Chen, et al., "Clustering of genes into regulons using integrated modeling-COGRIM, " Genome Biol, vol. 8, p. R4, 2007.
-
(2007)
Genome Biol
, vol.8
-
-
Chen, G.1
-
8
-
-
0345824737
-
Network component analysis: Reconstruction of regulatory signals in biological systems
-
Dec 23
-
J. C. Liao, et al., "Network component analysis: reconstruction of regulatory signals in biological systems, " Proc Natl Acad Sci USA, vol. 100, pp. 15522-7, Dec 23 2003.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 15522-15527
-
-
Liao, J.C.1
-
9
-
-
15244338624
-
GNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical implementation
-
Mar
-
L. M. Tran, et al., "gNCA: A framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation, " Metab Eng, vol. 7, pp. 128-41, Mar 2005.
-
(2005)
Metab Eng
, vol.7
, pp. 128-141
-
-
Tran, L.M.1
-
10
-
-
44349190399
-
Fast network component analysis (FastNCA) for gene regulatory network reconstruction from microarray data
-
Jun 1
-
C. Chang, et al., "Fast network component analysis (FastNCA) for gene regulatory network reconstruction from microarray data, " Bioinformatics, vol. 24, pp. 1349-58, Jun 1 2008.
-
(2008)
Bioinformatics
, vol.24
, pp. 1349-1358
-
-
Chang, C.1
-
11
-
-
33845365903
-
A Gibbs sampler for the identification of gene expression and network connectivity consistency
-
Dec 15
-
M. P. Brynildsen, et al., "A Gibbs sampler for the identification of gene expression and network connectivity consistency, " Bioinformatics, vol. 22, pp. 3040-6, Dec 15 2006.
-
(2006)
Bioinformatics
, vol.22
, pp. 3040-3046
-
-
Brynildsen, M.P.1
-
12
-
-
84865148118
-
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic
-
Aug 1
-
J. Gu, et al., "Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic, " Bioinformatics, vol. 28, pp. 1990-7, Aug 1 2012.
-
(2012)
Bioinformatics
, vol.28
, pp. 1990-1997
-
-
Gu, J.1
-
13
-
-
33144486498
-
SynTReN: A generator of synthetic gene expression data for design and analysis of structure learning algorithms
-
T. VandenBulcke, et al., "SynTReN: A generator of synthetic gene expression data for design and analysis of structure learning algorithms, " BMC Bioinformatics, vol. 7, p. 43, 2006.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 43
-
-
Van Den Bulcke, T.1
-
14
-
-
79952635505
-
Principles and strategies for developing network models in cancer
-
Mar 18
-
D. Peer and N. Hacohen, "Principles and strategies for developing network models in cancer, " Cell, vol. 144, pp. 864-73, Mar 18 2011.
-
(2011)
Cell
, vol.144
, pp. 864-873
-
-
Peer, D.1
Hacohen, N.2
-
15
-
-
33745014556
-
Genes regulated by estrogen in breast tumor cells in vitro are similarly regulated in vivo in tumor xenografts and human breast tumors
-
C. J. Creighton, et al., "Genes regulated by estrogen in breast tumor cells in vitro are similarly regulated in vivo in tumor xenografts and human breast tumors, " Genome Biol, vol. 7, p. R28, 2006.
-
(2006)
Genome Biol
, vol.7
-
-
Creighton, C.J.1
-
16
-
-
0027400210
-
Acquisition of hormone-independent growth in MCF-7 cells is accompanied by increased expression of estrogen-regulated genes but without detectable DNA amplifications
-
Jan 15
-
N. Brunner, et al., "Acquisition of hormone-independent growth in MCF-7 cells is accompanied by increased expression of estrogen-regulated genes but without detectable DNA amplifications, " Cancer Res, vol. 53, pp. 283-90, Jan 15 1993.
-
(1993)
Cancer Res
, vol.53
, pp. 283-290
-
-
Brunner, N.1
-
17
-
-
77649116895
-
Co-inhibition of BCL-W and BCL2 restores antiestrogen sensitivity through BECN1 and promotes an autophagy-associated necrosis
-
A. C. Crawford, et al., "Co-inhibition of BCL-W and BCL2 restores antiestrogen sensitivity through BECN1 and promotes an autophagy-associated necrosis, " PLoS One, vol. 5, p. e8604, 2010.
-
(2010)
PLoS One
, vol.5
-
-
Crawford, A.C.1
-
18
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
-
Jan 1
-
V. Matys, et al., "TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes, " Nucleic Acids Res, vol. 34, pp. D108-10, Jan 1 2006.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Matys, V.1
-
19
-
-
38549131376
-
The UCSC genome browser database: 2008 update
-
Jan
-
D. Karolchik, et al., "The UCSC Genome Browser Database: 2008 update, " Nucleic Acids Res, vol. 36, pp. D773-9, Jan 2008.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Karolchik, D.1
-
20
-
-
33750442923
-
Genome-wide analysis of estrogen receptor binding sites
-
Nov
-
J. S. Carroll, et al., "Genome-wide analysis of estrogen receptor binding sites, " Nat Genet, vol. 38, pp. 1289-97, Nov 2006.
-
(2006)
Nat Genet
, vol.38
, pp. 1289-1297
-
-
Carroll, J.S.1
-
21
-
-
0036129489
-
The p53 pathway in breast cancer
-
M. Gasco, et al., "The p53 pathway in breast cancer, " Breast Cancer Res, vol. 4, pp. 70-6, 2002.
-
(2002)
Breast Cancer Res
, vol.4
, pp. 70-76
-
-
Gasco, M.1
-
22
-
-
35048859402
-
Defining ETS transcription regulatory networks and their contribution to breast cancer progression
-
Oct 15
-
D. P. Turner, et al., "Defining ETS transcription regulatory networks and their contribution to breast cancer progression, " J Cell Biochem, vol. 102, pp. 549-59, Oct 15 2007.
-
(2007)
J Cell Biochem
, vol.102
, pp. 549-559
-
-
Turner, D.P.1
-
23
-
-
27544508293
-
The transcription factor Ets-1 in breast cancer
-
Jan 1
-
D. W. Lincoln 2nd and K. Bove, "The transcription factor Ets-1 in breast cancer, " Front Biosci, vol. 10, pp. 506-11, Jan 1 2005.
-
(2005)
Front Biosci
, vol.10
, pp. 506-511
-
-
Lincoln II, D.W.1
Bove, K.2
-
24
-
-
22044437986
-
Persistent STAT3 activation in colon cancer is associated with enhanced cell proliferation and tumor growth
-
Jun
-
F. M. Corvinus, et al., "Persistent STAT3 activation in colon cancer is associated with enhanced cell proliferation and tumor growth, " Neoplasia, vol. 7, pp. 545-55, Jun 2005.
-
(2005)
Neoplasia
, vol.7
, pp. 545-555
-
-
Corvinus, F.M.1
-
25
-
-
79956227340
-
STAT6 expression in glioblastoma promotes invasive growth
-
B. C. Merk, et al., "STAT6 expression in glioblastoma promotes invasive growth, " BMC Cancer, vol. 11, p. 184, 2011.
-
(2011)
BMC Cancer
, vol.11
, pp. 184
-
-
Merk, B.C.1
-
26
-
-
15444368857
-
Mechanisms of estrogen receptor signaling: Convergence of genomic and nongenomic actions on target genes
-
Apr
-
L. Bjornstrom and M. Sjoberg, "Mechanisms of estrogen receptor signaling: convergence of genomic and nongenomic actions on target genes, " Mol Endocrinol, vol. 19, pp. 833-42, Apr 2005.
-
(2005)
Mol Endocrinol
, vol.19
, pp. 833-842
-
-
Bjornstrom, L.1
Sjoberg, M.2
-
27
-
-
0034088842
-
Ligand-, cell-, and estrogen receptor subtype (alpha/beta)-dependent activation at GC-rich (Sp1) promoter elements
-
Feb 25
-
B. Saville, et al., "Ligand-, cell-, and estrogen receptor subtype (alpha/beta)-dependent activation at GC-rich (Sp1) promoter elements, " J Biol Chem, vol. 275, pp. 5379-87, Feb 25 2000.
-
(2000)
J Biol Chem
, vol.275
, pp. 5379-5387
-
-
Saville, B.1
-
28
-
-
84858266343
-
Leptin mediates tumor-stromal interactions that promote the invasive growth of breast cancer cells
-
Mar 15
-
I. Barone, et al., "Leptin mediates tumor-stromal interactions that promote the invasive growth of breast cancer cells, " Cancer Res, vol. 72, pp. 1416-27, Mar 15 2012.
-
(2012)
Cancer Res
, vol.72
, pp. 1416-1427
-
-
Barone, I.1
-
29
-
-
0742281300
-
E2F1 and c-Myc in cell growth and death
-
Jul-Aug
-
I. Matsumura, et al., "E2F1 and c-Myc in cell growth and death, " Cell Cycle, vol. 2, pp. 333-8, Jul-Aug 2003.
-
(2003)
Cell Cycle
, vol.2
, pp. 333-338
-
-
Matsumura, I.1
-
30
-
-
33846977688
-
Distinct mammalian SWI/SNF chromatin remodeling complexes with opposing roles in cell-cycle control
-
Feb 7
-
N. G. Nagl Jr., et al., "Distinct mammalian SWI/SNF chromatin remodeling complexes with opposing roles in cell-cycle control, " EMBO J, vol. 26, pp. 752-63, Feb 7 2007.
-
(2007)
EMBO J
, vol.26
, pp. 752-763
-
-
Nagl Jr., N.G.1
-
31
-
-
0141619401
-
Estrogen withdrawal-induced NFkappaB activity and bcl-3 expression in breast cancer cells: Roles in growth and hormone independence
-
Oct
-
M. A. Pratt, et al., "Estrogen withdrawal-induced NFkappaB activity and bcl-3 expression in breast cancer cells: roles in growth and hormone independence, " Mol Cell Biol, vol. 23, pp. 6887-900, Oct 2003.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 6887-6900
-
-
Pratt, M.A.1
-
32
-
-
13944282293
-
The nuclear factor kappa B inhibitor parthenolide restores ICI 182, 780 (Faslodex; fulvestrant)- induced apoptosis in antiestrogen-resistant breast cancer cells
-
Jan
-
R. B. Riggins, et al., "The nuclear factor kappa B inhibitor parthenolide restores ICI 182, 780 (Faslodex; fulvestrant)- induced apoptosis in antiestrogen-resistant breast cancer cells, " Mol Cancer Ther, vol. 4, pp. 33-41, Jan 2005.
-
(2005)
Mol Cancer Ther
, vol.4
, pp. 33-41
-
-
Riggins, R.B.1
-
33
-
-
18244397460
-
Down-regulation and growth inhibitory role of C/EBPalpha in breast cancer
-
May 1
-
S. Gery, et al., "Down-regulation and growth inhibitory role of C/EBPalpha in breast cancer, " Clin Cancer Res, vol. 11, pp. 3184-90, May 1 2005.
-
(2005)
Clin Cancer Res
, vol.11
, pp. 3184-3190
-
-
Gery, S.1
-
34
-
-
0032852479
-
CREB: A stimulusinduced transcription factor activated by a diverse array of extracellular signals
-
A. J. Shaywitz and M. E. Greenberg, "CREB: A stimulusinduced transcription factor activated by a diverse array of extracellular signals, " Annu Rev Biochem, vol. 68, pp. 821- 61, 1999.
-
(1999)
Annu Rev Biochem
, vol.68
, pp. 821-861
-
-
Shaywitz, A.J.1
Greenberg, M.E.2
-
35
-
-
84871720224
-
Systematic genetic interaction screens uncover cell polarity regulators and functional redundancy
-
Dec 16
-
B. T. Fievet, et al., "Systematic genetic interaction screens uncover cell polarity regulators and functional redundancy, " Nat Cell Biol, vol. 15, pp. 103-12, Dec 16 2012.
-
(2012)
Nat Cell Biol
, vol.15
, pp. 103-112
-
-
Fievet, B.T.1
|