-
1
-
-
78049404487
-
What is Epigenetics?
-
Riddihough G., Zahn L.M. What is Epigenetics?. Science 2010, 330:611.
-
(2010)
Science
, vol.330
, pp. 611
-
-
Riddihough, G.1
Zahn, L.M.2
-
2
-
-
34250900982
-
Base-excision repair of oxidative DNA damage
-
David S.S., O'Shea V.L., Kundu S. Base-excision repair of oxidative DNA damage. Nature 2007, 447:941-950.
-
(2007)
Nature
, vol.447
, pp. 941-950
-
-
David, S.S.1
O'Shea, V.L.2
Kundu, S.3
-
3
-
-
24044492241
-
The DNA trackwalkers: principles of lesion search and recognition by DNA glycosylases
-
Zharkov D.O., Grollman A.P. The DNA trackwalkers: principles of lesion search and recognition by DNA glycosylases. Mutat. Res. 2005, 577:24-54.
-
(2005)
Mutat. Res.
, vol.577
, pp. 24-54
-
-
Zharkov, D.O.1
Grollman, A.P.2
-
4
-
-
44449112688
-
Base excision DNA repair
-
Zharkov D.O. Base excision DNA repair. Cell. Mol. Life Sci. 2008, 65:1544-1565.
-
(2008)
Cell. Mol. Life Sci.
, vol.65
, pp. 1544-1565
-
-
Zharkov, D.O.1
-
5
-
-
0029829265
-
The redox/DNA repair protein, Ref-1, is essential for early embryonic development in mice
-
Xanthoudakis S., Smeyne J.D., Wallace J.D., Curran T. The redox/DNA repair protein, Ref-1, is essential for early embryonic development in mice. Proc. Natl Acad. Sci. USA 1996, 93:8919-8923.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 8919-8923
-
-
Xanthoudakis, S.1
Smeyne, J.D.2
Wallace, J.D.3
Curran, T.4
-
6
-
-
33845229846
-
DNA repair protein involved in heart and blood development
-
Wang Y., Shupenko C.C., Melo L.F., Strauss P.R. DNA repair protein involved in heart and blood development. Mol. Cell. Biol. 2006, 26:9083-9093.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 9083-9093
-
-
Wang, Y.1
Shupenko, C.C.2
Melo, L.F.3
Strauss, P.R.4
-
7
-
-
79955624803
-
A novel regulatory circuit in base excision repair involving AP endonuclease 1. Creb1 and DNA polymerase beta
-
Pei D.-S., Yang X.-J., Liu W., Guikema J.E.J., Schrader C.E., Strauss P.R. A novel regulatory circuit in base excision repair involving AP endonuclease 1. Creb1 and DNA polymerase beta. Nucleic Acids Res. 2011, 39:3156-3165.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 3156-3165
-
-
Pei, D.-S.1
Yang, X.-J.2
Liu, W.3
Guikema, J.E.J.4
Schrader, C.E.5
Strauss, P.R.6
-
8
-
-
78650307766
-
Uracil residues dependent on the deaminase AID in immunoglobulin gene variable and switch regions
-
Maul R.W., Saribasak H., Martomo S.A., McClure R.L., Yang W., Vaisman A., Gramlich H.S., Schatz D.G., Woodgate R., Wilson D.M., Gearhart P.J. Uracil residues dependent on the deaminase AID in immunoglobulin gene variable and switch regions. Nat. Immunol. 2011, 12:70-76.
-
(2011)
Nat. Immunol.
, vol.12
, pp. 70-76
-
-
Maul, R.W.1
Saribasak, H.2
Martomo, S.A.3
McClure, R.L.4
Yang, W.5
Vaisman, A.6
Gramlich, H.S.7
Schatz, D.G.8
Woodgate, R.9
Wilson, D.M.10
Gearhart, P.J.11
-
9
-
-
0037115911
-
Uracil in DNA - occurrence, consequences and repair
-
Krokan H.E., Drabløs F., Slupphaug G. Uracil in DNA - occurrence, consequences and repair. Oncogene 2002, 21:8935-8948.
-
(2002)
Oncogene
, vol.21
, pp. 8935-8948
-
-
Krokan, H.E.1
Drabløs, F.2
Slupphaug, G.3
-
10
-
-
77956095231
-
Active DNA demethylation: many roads lead to Rome
-
Wu S.C., Zhang Y. Active DNA demethylation: many roads lead to Rome. Nat. Rev. Mol. Cell Biol. 2010, 11:607-620.
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 607-620
-
-
Wu, S.C.1
Zhang, Y.2
-
11
-
-
65549116046
-
Reactive oxygen species, cancer and anti-cancer therapies
-
Manda G., Nechifor M.T., Neagu T.-M. Reactive oxygen species, cancer and anti-cancer therapies. Curr. Chem. Biol. 2009, 3:342-366.
-
(2009)
Curr. Chem. Biol.
, vol.3
, pp. 342-366
-
-
Manda, G.1
Nechifor, M.T.2
Neagu, T.-M.3
-
12
-
-
20144379523
-
Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues
-
Zhang X., Odom D.T., Koo S.-H., Conkright M.D., Canettieri G., Best J., Chen H., Jenner R., Herbolsheimer E., Jacobsen E., Kadam S., Ecker J.R., Emerson B., Hogenesch J.B., Unterman T., Young R.A., Montminy M. Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proc. Natl Acad. Sci. USA 2005, 102:4459-4464.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 4459-4464
-
-
Zhang, X.1
Odom, D.T.2
Koo, S.-H.3
Conkright, M.D.4
Canettieri, G.5
Best, J.6
Chen, H.7
Jenner, R.8
Herbolsheimer, E.9
Jacobsen, E.10
Kadam, S.11
Ecker, J.R.12
Emerson, B.13
Hogenesch, J.B.14
Unterman, T.15
Young, R.A.16
Montminy, M.17
-
13
-
-
19944367254
-
Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions
-
Impey S., Mccorkle S.R., Cha-Molstad H., Dwyer J.M., Yochum G.S., Boss J.M., Mcweeney S., Dunn J.J., Mandel G., Goodman R.H., York N. Defining the CREB regulon: a genome-wide analysis of transcription factor regulatory regions. Cell 2004, 119:1041-1054.
-
(2004)
Cell
, vol.119
, pp. 1041-1054
-
-
Impey, S.1
Mccorkle, S.R.2
Cha-Molstad, H.3
Dwyer, J.M.4
Yochum, G.S.5
Boss, J.M.6
Mcweeney, S.7
Dunn, J.J.8
Mandel, G.9
Goodman, R.H.10
York, N.11
-
14
-
-
0035430282
-
Transcriptional regulation by the phosphorylation-dependent factor CREB
-
Mayr B., Montminy M. Transcriptional regulation by the phosphorylation-dependent factor CREB. Nat. Rev. Mol. Cell Biol. 2001, 2:599-609.
-
(2001)
Nat. Rev. Mol. Cell Biol.
, vol.2
, pp. 599-609
-
-
Mayr, B.1
Montminy, M.2
-
15
-
-
0032852479
-
CREB: a stimulus-induced transcription factor activated by a diverse array of extracellular signals
-
Shaywitz A.J., Greenberg M.E. CREB: a stimulus-induced transcription factor activated by a diverse array of extracellular signals. Annu. Rev. Biochem. 1999, 68:821-861.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 821-861
-
-
Shaywitz, A.J.1
Greenberg, M.E.2
-
16
-
-
0035948624
-
The molecular biology and nomenclature of the activating transcription factor/cAMP responsive element binding family of transcription factors: activating transcription factor proteins and homeostasis
-
Hai T., Hartman M.G. The molecular biology and nomenclature of the activating transcription factor/cAMP responsive element binding family of transcription factors: activating transcription factor proteins and homeostasis. Gene 2001, 273:1-11.
-
(2001)
Gene
, vol.273
, pp. 1-11
-
-
Hai, T.1
Hartman, M.G.2
-
17
-
-
0033178246
-
Effect of oxidative DNA damage in promoter elements on transcription factor binding
-
Ghosh R., Mitchell D.L. Effect of oxidative DNA damage in promoter elements on transcription factor binding. Nucleic Acids Res. 1999, 27:3213-3218.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3213-3218
-
-
Ghosh, R.1
Mitchell, D.L.2
-
18
-
-
76149100891
-
-
Springer, New York, NY, M.D. Evans, M.S. Cooke (Eds.)
-
Mitchell D., Ghosh R. Oxidative Damage to Nucleic Acids 2007, 91-99. Springer, New York, NY. M.D. Evans, M.S. Cooke (Eds.).
-
(2007)
Oxidative Damage to Nucleic Acids
, pp. 91-99
-
-
Mitchell, D.1
Ghosh, R.2
-
19
-
-
67049087885
-
Base excision repair in early zebrafish development: evidence for DNA polymerase switching and standby AP endonuclease activity
-
Fortier S., Yang X., Wang Y., Bennett R.A.O., Strauss P.R. Base excision repair in early zebrafish development: evidence for DNA polymerase switching and standby AP endonuclease activity. Biochemistry 2009, 48:5396-5404.
-
(2009)
Biochemistry
, vol.48
, pp. 5396-5404
-
-
Fortier, S.1
Yang, X.2
Wang, Y.3
Bennett, R.A.O.4
Strauss, P.R.5
-
20
-
-
0031021533
-
Substrate binding by human apurinic/apyrimidinic endonuclease indicates a Briggs-Haldane mechanism
-
Strauss P.R., Beard W.A., Patterson T.A., Wilson S.H. Substrate binding by human apurinic/apyrimidinic endonuclease indicates a Briggs-Haldane mechanism. J. Biol. Chem. 1997, 272:1302-1307.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 1302-1307
-
-
Strauss, P.R.1
Beard, W.A.2
Patterson, T.A.3
Wilson, S.H.4
-
21
-
-
34548456862
-
Purification of CREB to apparent homogeneity: removal of truncation products and contaminating nucleic acid
-
Lopez D.I., Mick J.E., Nyborg J.K. Purification of CREB to apparent homogeneity: removal of truncation products and contaminating nucleic acid. Protein Expres. Purif. 2007, 55:406-418.
-
(2007)
Protein Expres. Purif.
, vol.55
, pp. 406-418
-
-
Lopez, D.I.1
Mick, J.E.2
Nyborg, J.K.3
-
22
-
-
0032516861
-
CAMP response element-binding protein monomers cooperatively assemble to form dimers on DNA
-
Wu X., Spiro C., Owen W.G., McMurray C.T. cAMP response element-binding protein monomers cooperatively assemble to form dimers on DNA. J. Biol. Chem. 1998, 273:20820-20827.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20820-20827
-
-
Wu, X.1
Spiro, C.2
Owen, W.G.3
McMurray, C.T.4
-
23
-
-
80052370584
-
Lys98 substitution in human AP endonuclease 1 affects the kinetic mechanism of enzyme action in base excision and nucleotide incision repair pathways
-
Timofeyeva N.A., Koval V.V., Ishchenko A.A., Saparbaev M.K., Fedorova O.S. Lys98 substitution in human AP endonuclease 1 affects the kinetic mechanism of enzyme action in base excision and nucleotide incision repair pathways. PloS One 2011, 6:1-10.
-
(2011)
PloS One
, vol.6
, pp. 1-10
-
-
Timofeyeva, N.A.1
Koval, V.V.2
Ishchenko, A.A.3
Saparbaev, M.K.4
Fedorova, O.S.5
-
24
-
-
0024673303
-
CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation
-
Iguchi-Ariga S.M., Schaffner W. CpG methylation of the cAMP-responsive enhancer/promoter sequence TGACGTCA abolishes specific factor binding as well as transcriptional activation. Genes Dev. 1989, 3:612-619.
-
(1989)
Genes Dev.
, vol.3
, pp. 612-619
-
-
Iguchi-Ariga, S.M.1
Schaffner, W.2
-
25
-
-
0025156152
-
The specific binding of nuclear protein(s) to the cAMP responsive element (CRE) sequence (TGACGTCA) is reduced by the misincorporation of U and increased by the deamination of C
-
Verri A., Mazzarello P., Biamonti G., Spadari S., Focher F. The specific binding of nuclear protein(s) to the cAMP responsive element (CRE) sequence (TGACGTCA) is reduced by the misincorporation of U and increased by the deamination of C. Nucleic Acids Res. 1990, 18:5775-5780.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5775-5780
-
-
Verri, A.1
Mazzarello, P.2
Biamonti, G.3
Spadari, S.4
Focher, F.5
-
26
-
-
0037172798
-
Endogenous DNA lesions can inhibit the binding of the AP-1 (c-Jun) transcription factor
-
Rogstad D.K., Liu P., Burdzy A., Lin S.S., Sowers L.C. Endogenous DNA lesions can inhibit the binding of the AP-1 (c-Jun) transcription factor. Biochemistry 2002, 41:8093-8102.
-
(2002)
Biochemistry
, vol.41
, pp. 8093-8102
-
-
Rogstad, D.K.1
Liu, P.2
Burdzy, A.3
Lin, S.S.4
Sowers, L.C.5
-
27
-
-
0038799736
-
Oxidative DNA damage: mechanisms, mutation, and disease
-
Cooke M.S., Evans M.D., Dizdaroglu M., Lunec J. Oxidative DNA damage: mechanisms, mutation, and disease. FASEB J. 2003, 17:1195-1214.
-
(2003)
FASEB J.
, vol.17
, pp. 1195-1214
-
-
Cooke, M.S.1
Evans, M.D.2
Dizdaroglu, M.3
Lunec, J.4
-
29
-
-
0042026553
-
Oxidized guanine lesions as modulators of gene transcription, Altered p50 binding affinity and repair shielding by 7,8-dihydro-8-oxo-2'-deoxyguanosine lesions in the NF-kappaB promoter element
-
Hailer-Morrison M.K., Kotler J.M., Martin B.D., Sugden K.D. Oxidized guanine lesions as modulators of gene transcription, Altered p50 binding affinity and repair shielding by 7,8-dihydro-8-oxo-2'-deoxyguanosine lesions in the NF-kappaB promoter element. Biochemistry 2003, 42:9761-9770.
-
(2003)
Biochemistry
, vol.42
, pp. 9761-9770
-
-
Hailer-Morrison, M.K.1
Kotler, J.M.2
Martin, B.D.3
Sugden, K.D.4
-
30
-
-
0032831460
-
Effects of 8-oxo-7,8-dihydro-2'-deoxyguanosine on the binding of the transcription factor Sp1 to its cognate target DNA sequence (GC box)
-
Ramon O., Sauvaigo S., Gasparutto D., Faure P., Favier A., Cadet J. Effects of 8-oxo-7,8-dihydro-2'-deoxyguanosine on the binding of the transcription factor Sp1 to its cognate target DNA sequence (GC box). Free Radical Res. 1999, 31:217-229.
-
(1999)
Free Radical Res.
, vol.31
, pp. 217-229
-
-
Ramon, O.1
Sauvaigo, S.2
Gasparutto, D.3
Faure, P.4
Favier, A.5
Cadet, J.6
-
31
-
-
79953694175
-
Divergent effects of oxidatively induced modification to the C8 of 2'-deoxyadenosine on transcription factor binding: 8,5' (S)-cyclo-2'-deoxyadenosine inhibits the binding of multiple sequence specific transcription factors, while 8-oxo-2'-deoxyadenosine
-
Abraham J., Brooks P.J. Divergent effects of oxidatively induced modification to the C8 of 2'-deoxyadenosine on transcription factor binding: 8,5' (S)-cyclo-2'-deoxyadenosine inhibits the binding of multiple sequence specific transcription factors, while 8-oxo-2'-deoxyadenosine. Environ. Mol. Mutagen. 2011, 52:287-295.
-
(2011)
Environ. Mol. Mutagen.
, vol.52
, pp. 287-295
-
-
Abraham, J.1
Brooks, P.J.2
-
32
-
-
67249112093
-
Lesion-induced DNA weak structural changes detected by pulsed EPR spectroscopy combined with site-directed spin labelling
-
Sicoli G., Mathis G., Aci-Sèche S., Saint-Pierre C., Boulard Y., Gasparutto D., Gambarelli S. Lesion-induced DNA weak structural changes detected by pulsed EPR spectroscopy combined with site-directed spin labelling. Nucleic Acids Res. 2009, 37:3165-3176.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3165-3176
-
-
Sicoli, G.1
Mathis, G.2
Aci-Sèche, S.3
Saint-Pierre, C.4
Boulard, Y.5
Gasparutto, D.6
Gambarelli, S.7
-
33
-
-
38349188454
-
DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics
-
Chen J., Dupradeau F.-Y., Case D.A., Turner C.J., Stubbe J. DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics. Nucleic Acids Res. 2008, 36:253-262.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 253-262
-
-
Chen, J.1
Dupradeau, F.-Y.2
Case, D.A.3
Turner, C.J.4
Stubbe, J.5
-
34
-
-
84872418497
-
The effect of a G:T mispair on the dynamics of DNA
-
Imhof P., Zahran M. The effect of a G:T mispair on the dynamics of DNA. PloS One 2013, 8:1-11.
-
(2013)
PloS One
, vol.8
, pp. 1-11
-
-
Imhof, P.1
Zahran, M.2
-
35
-
-
0031762950
-
GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support
-
Rebhan M., Chalifa-Caspi V., Prilusky J., Lancet D. GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support. Bioinformatics 1998, 14:656-664.
-
(1998)
Bioinformatics
, vol.14
, pp. 656-664
-
-
Rebhan, M.1
Chalifa-Caspi, V.2
Prilusky, J.3
Lancet, D.4
-
36
-
-
84860381586
-
Functions and regulation of the APOBEC family of proteins
-
Smith H.C., Bennett R.P., Kizilyer A., McDougall W.M., Prohaska K.M. Functions and regulation of the APOBEC family of proteins. Semin. Cell Dev. Biol. 2012, 23:258-268.
-
(2012)
Semin. Cell Dev. Biol.
, vol.23
, pp. 258-268
-
-
Smith, H.C.1
Bennett, R.P.2
Kizilyer, A.3
McDougall, W.M.4
Prohaska, K.M.5
|