메뉴 건너뛰기




Volumn 41, Issue 6, 2013, Pages 1635-1639

The links between chromatin spatial organization and biological function

Author keywords

Chromatin; Fission yeast; Heterochromatin; Nuclear organization; Transcriptional regulation

Indexed keywords

DNA ADENINE METHYLTRANSFERASE; DNA DIRECTED RNA POLYMERASE III; REPETITIVE DNA;

EID: 84887936807     PISSN: 03005127     EISSN: 14708752     Source Type: Journal    
DOI: 10.1042/BST20130213     Document Type: Conference Paper
Times cited : (7)

References (47)
  • 1
    • 84878011578 scopus 로고    scopus 로고
    • Exploring the three-dimensional organization of genomes: Interpreting chromatin interaction data
    • Dekker, J., Marti-Renom, M.A. and Mirny, L.A. (2013) Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data. Nat. Rev. Genet. 14, 390-403
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 390-403
    • Dekker, J.1    Marti-Renom, M.A.2    Mirny, L.A.3
  • 2
    • 58349120998 scopus 로고    scopus 로고
    • Reorganization of chromatin is an early response to nitrogen starvation in Schizosaccharomyces pombe
    • Alfredsson-Timmins, J., Kristell, C., Henningson, F., Lyckman, S. and Bjerling, P. (2009) Reorganization of chromatin is an early response to nitrogen starvation in Schizosaccharomyces pombe. Chromosoma 118, 99-112
    • (2009) Chromosoma , vol.118 , pp. 99-112
    • Alfredsson-Timmins, J.1    Kristell, C.2    Henningson, F.3    Lyckman, S.4    Bjerling, P.5
  • 4
    • 84856977855 scopus 로고    scopus 로고
    • Quantitative live cell fluorescence-microscopy analysis of fission yeast
    • Bjerling, P., Olsson, I. and Meng, X. (2012) Quantitative live cell fluorescence-microscopy analysis of fission yeast. J. Visualized Exp. e3454
    • (2012) J. Visualized Exp.
    • Bjerling, P.1    Olsson, I.2    Meng, X.3
  • 5
    • 0030461543 scopus 로고    scopus 로고
    • In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition
    • Robinett, C.C., Straight, A., Li, G., Willhelm, C., Sudlow, G., Murray, A. and Belmont, A.S. (1996) In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition. J. Cell Biol. 135, 1685-1700
    • (1996) J. Cell Biol. , vol.135 , pp. 1685-1700
    • Robinett, C.C.1    Straight, A.2    Li, G.3    Willhelm, C.4    Sudlow, G.5    Murray, A.6    Belmont, A.S.7
  • 7
    • 84855297335 scopus 로고    scopus 로고
    • A decade of 3C technologies: Insights into nuclear organization
    • de Wit, E. and de Laat, W. (2012) A decade of 3C technologies: insights into nuclear organization. Genes Dev. 26, 11-24
    • (2012) Genes Dev. , vol.26 , pp. 11-24
    • De Wit, E.1    De Laat, W.2
  • 9
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F. and Richmond, T.J. (1997) Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389, 251-260
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 10
    • 56549108407 scopus 로고    scopus 로고
    • Epigenetic regulation of centromeric chromatin: Old dogs, new tricks?
    • Allshire, R.C. and Karpen, G.H. (2008) Epigenetic regulation of centromeric chromatin: old dogs, new tricks? Nat. Rev. Genet. 9, 923-937
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 923-937
    • Allshire, R.C.1    Karpen, G.H.2
  • 11
    • 84878282462 scopus 로고    scopus 로고
    • Histone variants in pluripotency and disease
    • Skene, P.J. and Henikoff, S. (2013) Histone variants in pluripotency and disease. Development 140, 2513-2524
    • (2013) Development , vol.140 , pp. 2513-2524
    • Skene, P.J.1    Henikoff, S.2
  • 12
    • 76249114074 scopus 로고    scopus 로고
    • Histone variant H2A.Z regulates centromere silencing and chromosome segregation in fission yeast
    • Hou, H., Wang, Y., Kallgren, S.P., Thompson, J., Yates, 3rd, J.R. and Jia, S. (2010) Histone variant H2A.Z regulates centromere silencing and chromosome segregation in fission yeast. J. Biol. Chem. 285, 1909-1918
    • (2010) J. Biol. Chem. , vol.285 , pp. 1909-1918
    • Hou, H.1    Wang, Y.2    Kallgren, S.P.3    Thompson, J.4    Yates III, J.R.5    Jia, S.6
  • 13
    • 84655170009 scopus 로고    scopus 로고
    • A model for mitotic inheritance of histone lysine methylation
    • Xu, M., Wang, W., Chen, S. and Zhu, B. (2012) A model for mitotic inheritance of histone lysine methylation. EMBO Rep. 13, 60-67
    • (2012) EMBO Rep. , vol.13 , pp. 60-67
    • Xu, M.1    Wang, W.2    Chen, S.3    Zhu, B.4
  • 14
    • 78650447665 scopus 로고    scopus 로고
    • β-N-acetylglucosamine (O-GlcNAc) is part of the histone code
    • Sakabe, K., Wang, Z. and Hart, G.W. (2010) β-N-acetylglucosamine (O-GlcNAc) is part of the histone code. Proc. Natl. Acad. Sci. U.S.A. 107, 19915-19920
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 19915-19920
    • Sakabe, K.1    Wang, Z.2    Hart, G.W.3
  • 15
    • 80052942443 scopus 로고    scopus 로고
    • Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification
    • Tan, M., Luo, H., Lee, S., Jin, F., Yang, J.S., Montellier, E., Buchou, T., Cheng, Z., Rousseaux, S., Rajagopal, N. et al. (2011) Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell 146, 1016-1028
    • (2011) Cell , vol.146 , pp. 1016-1028
    • Tan, M.1    Luo, H.2    Lee, S.3    Jin, F.4    Yang, J.S.5    Montellier, E.6    Buchou, T.7    Cheng, Z.8    Rousseaux, S.9    Rajagopal, N.10
  • 17
    • 0037072661 scopus 로고    scopus 로고
    • Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi
    • Volpe, T.A., Kidner, C., Hall, I.M., Teng, G., Grewal, S.I. and Martienssen, R.A. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297, 1833-1837
    • (2002) Science , vol.297 , pp. 1833-1837
    • Volpe, T.A.1    Kidner, C.2    Hall, I.M.3    Teng, G.4    Grewal, S.I.5    Martienssen, R.A.6
  • 18
    • 53249113141 scopus 로고    scopus 로고
    • Macromolecular crowding and its potential impact on nuclear function
    • Richter, K., Nessling, M. and Lichter, P. (2008) Macromolecular crowding and its potential impact on nuclear function. Biochim. Biophys. Acta 1783, 2100-2107
    • (2008) Biochim. Biophys. Acta , vol.1783 , pp. 2100-2107
    • Richter, K.1    Nessling, M.2    Lichter, P.3
  • 19
    • 84860162529 scopus 로고    scopus 로고
    • Fission yeast Lem2 and Man1 perform fundamental functions of the animal cell nuclear lamina
    • Gonzalez, Y., Saito, A. and Sazer, S. (2012) Fission yeast Lem2 and Man1 perform fundamental functions of the animal cell nuclear lamina. Nucleus 3, 60-76
    • (2012) Nucleus , vol.3 , pp. 60-76
    • Gonzalez, Y.1    Saito, A.2    Sazer, S.3
  • 21
    • 84860201732 scopus 로고    scopus 로고
    • The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. Pombe
    • Steglich, B., Filion, G.J., van Steensel, B. and Ekwall, K. (2012) The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe. Nucleus 3, 77-87
    • (2012) Nucleus , vol.3 , pp. 77-87
    • Steglich, B.1    Filion, G.J.2    Van Steensel, B.3    Ekwall, K.4
  • 23
    • 75649114998 scopus 로고    scopus 로고
    • Centromeric localization of dispersed ol III genes in fission yeast
    • Iwasaki, O., Tanaka, A., Tanizawa, H., Grewal, S.I. and Noma, K. (2010) Centromeric localization of dispersed ol III genes in fission yeast. Mol. Biol. Cell 21, 254-265
    • (2010) Mol. Biol. Cell , vol.21 , pp. 254-265
    • Iwasaki, O.1    Tanaka, A.2    Tanizawa, H.3    Grewal, S.I.4    Noma, K.5
  • 24
    • 33646912186 scopus 로고    scopus 로고
    • A role for TFIIIC transcription factor complex in genome organization
    • Noma, K., Cam, H.P., Maraia, R.J. and Grewal, S.I. (2006) A role for TFIIIC transcription factor complex in genome organization. Cell 125, 859-872
    • (2006) Cell , vol.125 , pp. 859-872
    • Noma, K.1    Cam, H.P.2    Maraia, R.J.3    Grewal, S.I.4
  • 25
    • 77951962545 scopus 로고    scopus 로고
    • Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells
    • Moqtaderi, Z., Wang, J., Raha, D., White, R.J., Snyder, M., Weng, Z. and Struhl, K. (2010) Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells. Nat. Struct. Mol. Biol. 17, 635-640
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 635-640
    • Moqtaderi, Z.1    Wang, J.2    Raha, D.3    White, R.J.4    Snyder, M.5    Weng, Z.6    Struhl, K.7
  • 27
    • 84868696925 scopus 로고    scopus 로고
    • CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons
    • Lorenz, D.R., Mikheyeva, I.V., Johansen, P., Meyer, L., Berg, A., Grewal, S.I. and Cam, H.P. (2012) CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons. Mol. Cell. Biol. 32, 4215-4225
    • (2012) Mol. Cell. Biol. , vol.32 , pp. 4215-4225
    • Lorenz, D.R.1    Mikheyeva, I.V.2    Johansen, P.3    Meyer, L.4    Berg, A.5    Grewal, S.I.6    Cam, H.P.7
  • 29
    • 0028148679 scopus 로고
    • Dynamics of chromosome organization and pairing during meiotic prophase in fission yeast
    • Scherthan, H., Bähler, J. and Kohli, J. (1994) Dynamics of chromosome organization and pairing during meiotic prophase in fission yeast. J. Cell Biol. 127, 273-285
    • (1994) J. Cell Biol. , vol.127 , pp. 273-285
    • Scherthan, H.1    Bähler, J.2    Kohli, J.3
  • 30
    • 78650458168 scopus 로고    scopus 로고
    • Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation
    • Tanizawa, H., Iwasaki, O., Tanaka, A., Capizzi, J.R., Wickramasinghe, P., Lee, M., Fu, Z. and Noma, K. (2010) Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation. Nucleic Acids Res. 38, 8164-8177
    • (2010) Nucleic Acids Res , vol.38 , pp. 8164-8177
    • Tanizawa, H.1    Iwasaki, O.2    Tanaka, A.3    Capizzi, J.R.4    Wickramasinghe, P.5    Lee, M.6    Fu, Z.7    Noma, K.8
  • 33
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon, J.R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J.S. and Ren, B. (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376-380
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 34
    • 77957369058 scopus 로고    scopus 로고
    • Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture
    • Yaffe, E., Farkash-Amar, S., Polten, A., Yakhini, Z., Tanay, A. and Simon, I. (2010) Comparative analysis of DNA replication timing reveals conserved large-scale chromosomal architecture. PLoS Genet. 6, e1001011
    • (2010) PLoS Genet , vol.6
    • Yaffe, E.1    Farkash-Amar, S.2    Polten, A.3    Yakhini, Z.4    Tanay, A.5    Simon, I.6
  • 35
    • 77952994784 scopus 로고    scopus 로고
    • Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
    • Ryba, T., Hiratani, I., Lu, J., Itoh, M., Kulik, M., Zhang, J., Schulz, T.C., Robins, A.J., Dalton, S. and Gilbert, D.M. (2010) Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res. 20, 761-770
    • (2010) Genome Res , vol.20 , pp. 761-770
    • Ryba, T.1    Hiratani, I.2    Lu, J.3    Itoh, M.4    Kulik, M.5    Zhang, J.6    Schulz, T.C.7    Robins, A.J.8    Dalton, S.9    Gilbert, D.M.10
  • 36
    • 0036860727 scopus 로고    scopus 로고
    • The spatio-temporal organization of DNA replication sites is identical in primary, immortalized and transformed mammalian cells
    • Dimitrova, D.S. and Berezney, R. (2002) The spatio-temporal organization of DNA replication sites is identical in primary, immortalized and transformed mammalian cells. J. Cell Sci. 115, 4037-4051
    • (2002) J. Cell Sci. , vol.115 , pp. 4037-4051
    • Dimitrova, D.S.1    Berezney, R.2
  • 37
    • 84868693520 scopus 로고    scopus 로고
    • Systematic determination of replication activity type highlights interconnections between replication, chromatin structure and nuclear localization
    • Farkash-Amar, S., David, Y., Polten, A., Hezroni, H., Eldar, Y.C., Meshorer, E., Yakhini, Z. and Simon, I. (2012) Systematic determination of replication activity type highlights interconnections between replication, chromatin structure and nuclear localization. PLoS ONE 7, e48986
    • (2012) PLoS ONE , vol.7
    • Farkash-Amar, S.1    David, Y.2    Polten, A.3    Hezroni, H.4    Eldar, Y.C.5    Meshorer, E.6    Yakhini, Z.7    Simon, I.8
  • 38
    • 33947099546 scopus 로고    scopus 로고
    • Replication foci dynamics: Replication patterns are modulated by S-phase checkpoint kinases in fission yeast
    • Meister, P., Taddei, A., Ponti, A., Baldacci, G. and Gasser, S.M. (2007) Replication foci dynamics: replication patterns are modulated by S-phase checkpoint kinases in fission yeast. EMBO J. 26, 1315-1326
    • (2007) EMBO J , vol.26 , pp. 1315-1326
    • Meister, P.1    Taddei, A.2    Ponti, A.3    Baldacci, G.4    Gasser, S.M.5
  • 41
    • 78951488313 scopus 로고    scopus 로고
    • Advancing our understanding of functional genome organisation through studies in the fission yeast
    • Olsson, I. and Bjerling, P. (2011) Advancing our understanding of functional genome organisation through studies in the fission yeast. Curr. Genet. 57, 1-12
    • (2011) Curr. Genet. , vol.57 , pp. 1-12
    • Olsson, I.1    Bjerling, P.2
  • 43
    • 78049394356 scopus 로고    scopus 로고
    • Interactions between nuclei and the cytoskeleton are mediated by SUN-KASH nuclear-envelope bridges
    • Starr, D.A. and Fridolfsson, H.N. (2010) Interactions between nuclei and the cytoskeleton are mediated by SUN-KASH nuclear-envelope bridges. Annu. Rev. Cell Dev. Biol. 26, 421-444
    • (2010) Annu. Rev. Cell Dev. Biol. , vol.26 , pp. 421-444
    • Starr, D.A.1    Fridolfsson, H.N.2
  • 44
    • 70449850077 scopus 로고    scopus 로고
    • Membrane proteins Bqt3 and -4 anchor telomeres to the nuclear envelope to ensure chromosomal bouquet formation
    • Chikashige, Y., Yamane, M., Okamasa, K., Tsutsumi, C., Kojidani, T., Sato, M., Haraguchi, T. and Hiraoka, Y. (2009) Membrane proteins Bqt3 and -4 anchor telomeres to the nuclear envelope to ensure chromosomal bouquet formation. J. Cell Biol. 187, 413-427
    • (2009) J. Cell Biol. , vol.187 , pp. 413-427
    • Chikashige, Y.1    Yamane, M.2    Okamasa, K.3    Tsutsumi, C.4    Kojidani, T.5    Sato, M.6    Haraguchi, T.7    Hiraoka, Y.8
  • 47
    • 77649255314 scopus 로고    scopus 로고
    • Nitrogen depletion in the fission yeast Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes
    • Kristell, C., Orzechowski Westholm, J., Olsson, I., Ronne, H., Komorowski, J. and Bjerling, P. (2010) Nitrogen depletion in the fission yeast Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes. Genome Res. 20, 361-371
    • (2010) Genome Res , vol.20 , pp. 361-371
    • Kristell, C.1    Orzechowski Westholm, J.2    Olsson, I.3    Ronne, H.4    Komorowski, J.5    Bjerling, P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.