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Volumn 209, Issue 12, 2013, Pages 784-789

FFPE tissue as a feasible source for gene expression analysis - A comparison of three reference genes and one tumor marker

Author keywords

FFPE; Neuroendocrine cancer; Pulmonary cancer; Reference genes; RNA quality

Indexed keywords

BETA ACTIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; MESSENGER RNA; TUMOR MARKER;

EID: 84887820664     PISSN: 03440338     EISSN: 16180631     Source Type: Journal    
DOI: 10.1016/j.prp.2013.09.007     Document Type: Article
Times cited : (30)

References (33)
  • 1
    • 84884772936 scopus 로고    scopus 로고
    • Establishment of a standardized gene-expression analysis system using formalin-fixed, paraffin-embedded, breast cancer specimens
    • Ibusuki M., et al. Establishment of a standardized gene-expression analysis system using formalin-fixed, paraffin-embedded, breast cancer specimens. Breast Cancer 2013, 20(2):159-166.
    • (2013) Breast Cancer , vol.20 , Issue.2 , pp. 159-166
    • Ibusuki, M.1
  • 2
    • 42149143085 scopus 로고    scopus 로고
    • Determinants of RNA quality from FFPE samples
    • von Ahlfen S., et al. Determinants of RNA quality from FFPE samples. PLoS ONE 2007, 2(12):e1261.
    • (2007) PLoS ONE , vol.2 , Issue.12
    • von Ahlfen, S.1
  • 3
    • 0034812285 scopus 로고    scopus 로고
    • Unlocking the archive - gene expression in paraffin-embedded tissue
    • Lewis F., et al. Unlocking the archive - gene expression in paraffin-embedded tissue. J. Pathol. 2001, 195(1):66-71.
    • (2001) J. Pathol. , vol.195 , Issue.1 , pp. 66-71
    • Lewis, F.1
  • 4
    • 84859934922 scopus 로고    scopus 로고
    • Nucleic acids from long-term preserved FFPE tissues are suitable for downstream analyses
    • Ludyga N., et al. Nucleic acids from long-term preserved FFPE tissues are suitable for downstream analyses. Virchows Arch. 2012, 460(2):131-140.
    • (2012) Virchows Arch. , vol.460 , Issue.2 , pp. 131-140
    • Ludyga, N.1
  • 5
    • 84862680481 scopus 로고    scopus 로고
    • Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples
    • Northcott P.A., et al. Rapid, reliable, and reproducible molecular sub-grouping of clinical medulloblastoma samples. Acta Neuropathol. 2012, 123(4):615-626.
    • (2012) Acta Neuropathol. , vol.123 , Issue.4 , pp. 615-626
    • Northcott, P.A.1
  • 6
    • 79955674240 scopus 로고    scopus 로고
    • MRNA transcript quantification in archival samples using multiplexed, color-coded probes
    • Reis P.P., et al. mRNA transcript quantification in archival samples using multiplexed, color-coded probes. BMC Biotechnol. 2011, 11:46.
    • (2011) BMC Biotechnol. , vol.11 , pp. 46
    • Reis, P.P.1
  • 7
    • 84858993897 scopus 로고    scopus 로고
    • Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues
    • Waldron L., et al. Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues. BMC Cancer 2012, 12:124.
    • (2012) BMC Cancer , vol.12 , pp. 124
    • Waldron, L.1
  • 8
    • 84859704449 scopus 로고    scopus 로고
    • Effective DNA/RNA co-extraction for analysis of microRNAs, mRNAs, and genomic DNA from formalin-fixed paraffin-embedded specimens
    • Kotorashvili A., et al. Effective DNA/RNA co-extraction for analysis of microRNAs, mRNAs, and genomic DNA from formalin-fixed paraffin-embedded specimens. PLoS ONE 2012, 7(4):e34683.
    • (2012) PLoS ONE , vol.7 , Issue.4
    • Kotorashvili, A.1
  • 9
    • 80052551566 scopus 로고    scopus 로고
    • Establishment and characterization of six human lung cancer cell lines: EGFR, p53 gene mutations and expressions of drug sensitivity genes
    • Ku J.L., et al. Establishment and characterization of six human lung cancer cell lines: EGFR, p53 gene mutations and expressions of drug sensitivity genes. Cell Oncol. (Dordr.) 2011, 34(1):45-54.
    • (2011) Cell Oncol. (Dordr.) , vol.34 , Issue.1 , pp. 45-54
    • Ku, J.L.1
  • 10
    • 84855415783 scopus 로고    scopus 로고
    • Novel transcriptional targets of the SRY-HMG box transcription factor SOX4 link its expression to the development of small cell lung cancer
    • Castillo S.D., et al. Novel transcriptional targets of the SRY-HMG box transcription factor SOX4 link its expression to the development of small cell lung cancer. Cancer Res. 2012, 72(1):176-186.
    • (2012) Cancer Res. , vol.72 , Issue.1 , pp. 176-186
    • Castillo, S.D.1
  • 11
    • 80053347466 scopus 로고    scopus 로고
    • MiR-375 is activated by ASH1 and inhibits YAP1 in a lineage-dependent manner in lung cancer
    • Nishikawa E., et al. miR-375 is activated by ASH1 and inhibits YAP1 in a lineage-dependent manner in lung cancer. Cancer Res. 2011, 71(19):6165-6173.
    • (2011) Cancer Res. , vol.71 , Issue.19 , pp. 6165-6173
    • Nishikawa, E.1
  • 12
    • 84655164992 scopus 로고    scopus 로고
    • Expression profiling-based subtyping identifies novel non-small cell lung cancer subgroups and implicates putative resistance to pemetrexed therapy
    • Hou J., et al. Expression profiling-based subtyping identifies novel non-small cell lung cancer subgroups and implicates putative resistance to pemetrexed therapy. J. Thorac. Oncol. 2012, 7(1):105-114.
    • (2012) J. Thorac. Oncol. , vol.7 , Issue.1 , pp. 105-114
    • Hou, J.1
  • 13
    • 84860570657 scopus 로고    scopus 로고
    • Gene expression of somatostatin receptor subtypes SSTR2a, SSTR3 and SSTR5 in peripheral blood of neuroendocrine lung cancer affected patients
    • Muscarella L.A., et al. Gene expression of somatostatin receptor subtypes SSTR2a, SSTR3 and SSTR5 in peripheral blood of neuroendocrine lung cancer affected patients. Cell Oncol. (Dordr.) 2011, 34(5):435-441.
    • (2011) Cell Oncol. (Dordr.) , vol.34 , Issue.5 , pp. 435-441
    • Muscarella, L.A.1
  • 14
    • 84862633021 scopus 로고    scopus 로고
    • Validation of appropriate reference genes for gene expression studies in human thyroid gland using real-time RT-PCR
    • Chantawibul S., Anuwong A., Leelawat K.1. Validation of appropriate reference genes for gene expression studies in human thyroid gland using real-time RT-PCR. J. Med. Assoc. Thai. 2012, 95(Suppl. 3):S36-S40.
    • (2012) J. Med. Assoc. Thai. , vol.95 , Issue.SUPPL. 3
    • Chantawibul, S.1    Anuwong, A.2    Leelawat, K.1.3
  • 15
    • 84866175784 scopus 로고    scopus 로고
    • GUSB and ATP2B4 are suitable reference genes for CFTR gene expression data normalization in nasal epithelium cells
    • Masvidal L., et al. GUSB and ATP2B4 are suitable reference genes for CFTR gene expression data normalization in nasal epithelium cells. J. Cyst. Fibros. 2012, 11(5):398-404.
    • (2012) J. Cyst. Fibros. , vol.11 , Issue.5 , pp. 398-404
    • Masvidal, L.1
  • 16
    • 84876771327 scopus 로고    scopus 로고
    • Validation of reference genes for ovarian tissue from capuchin monkeys (Cebus apella)
    • Brito A.B., et al. Validation of reference genes for ovarian tissue from capuchin monkeys (Cebus apella). Zygote 2013, 21(2):167-171.
    • (2013) Zygote , vol.21 , Issue.2 , pp. 167-171
    • Brito, A.B.1
  • 17
    • 84861177753 scopus 로고    scopus 로고
    • Tissue-specific selection of stable reference genes for real-time PCR normalization in an obese rat model
    • Cabiati M., et al. Tissue-specific selection of stable reference genes for real-time PCR normalization in an obese rat model. J. Mol. Endocrinol. 2012, 48(3):251-260.
    • (2012) J. Mol. Endocrinol. , vol.48 , Issue.3 , pp. 251-260
    • Cabiati, M.1
  • 18
    • 59149099364 scopus 로고    scopus 로고
    • Achaete-scute complex homologue 1 regulates tumor-initiating capacity in human small cell lung cancer
    • Jiang T., et al. Achaete-scute complex homologue 1 regulates tumor-initiating capacity in human small cell lung cancer. Cancer Res. 2009, 69(3):845-854.
    • (2009) Cancer Res. , vol.69 , Issue.3 , pp. 845-854
    • Jiang, T.1
  • 19
    • 84887558701 scopus 로고    scopus 로고
    • Proteasome inhibition leads to altered signaling in the proteome of cisplatin-resistant human ovarian carcinoma cell line
    • Duraj J., et al. Proteasome inhibition leads to altered signaling in the proteome of cisplatin-resistant human ovarian carcinoma cell line. Neoplasma 2013, 60(6):627-634.
    • (2013) Neoplasma , vol.60 , Issue.6 , pp. 627-634
    • Duraj, J.1
  • 20
    • 2342667387 scopus 로고    scopus 로고
    • The development of proteasome inhibitors as anticancer drugs
    • Adams J. The development of proteasome inhibitors as anticancer drugs. Cancer Cell 2004, 5(5):417-421.
    • (2004) Cancer Cell , vol.5 , Issue.5 , pp. 417-421
    • Adams, J.1
  • 21
    • 33744462389 scopus 로고    scopus 로고
    • Pathology and genetics of tumours of the lung, pleura, thymus and heart
    • IARC Press/Oxford University Press (distributor), Lyon/Oxford
    • Travis W.D., et al. Pathology and genetics of tumours of the lung, pleura, thymus and heart. World Health Organization Classification of Tumours 2004, IARC Press/Oxford University Press (distributor), Lyon/Oxford, 344p.
    • (2004) World Health Organization Classification of Tumours , pp. 344
    • Travis, W.D.1
  • 22
    • 64149097786 scopus 로고    scopus 로고
    • The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
    • Bustin S.A., et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem. 2009, 55(4):611-622.
    • (2009) Clin. Chem. , vol.55 , Issue.4 , pp. 611-622
    • Bustin, S.A.1
  • 23
    • 84875720543 scopus 로고    scopus 로고
    • An old method facing a new challenge: re-visiting housekeeping proteins as internal reference control for neuroscience research
    • Li R., Shen Y. An old method facing a new challenge: re-visiting housekeeping proteins as internal reference control for neuroscience research. Life Sci. 2013, 92(13):747-751.
    • (2013) Life Sci. , vol.92 , Issue.13 , pp. 747-751
    • Li, R.1    Shen, Y.2
  • 24
    • 84872531547 scopus 로고    scopus 로고
    • ACTB in cancer
    • Guo C., et al. ACTB in cancer. Clin. Chim. Acta 2013, 417:39-44.
    • (2013) Clin. Chim. Acta , vol.417 , pp. 39-44
    • Guo, C.1
  • 25
    • 84879883120 scopus 로고    scopus 로고
    • Identification of accurate reference genes for RT-qPCR analysis of formalin-fixed paraffin-embedded tissue from primary non-small cell lung cancers and brain and lymph node metastases
    • Soes S., et al. Identification of accurate reference genes for RT-qPCR analysis of formalin-fixed paraffin-embedded tissue from primary non-small cell lung cancers and brain and lymph node metastases. Lung Cancer 2013, 81(2):180-186.
    • (2013) Lung Cancer , vol.81 , Issue.2 , pp. 180-186
    • Soes, S.1
  • 26
    • 84867593263 scopus 로고    scopus 로고
    • Housekeeping gene selection advisory: glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and beta-actin are targets of miR-644a
    • Sikand K., et al. Housekeeping gene selection advisory: glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and beta-actin are targets of miR-644a. PLoS ONE 2012, 7(10):e47510.
    • (2012) PLoS ONE , vol.7 , Issue.10
    • Sikand, K.1
  • 27
    • 84883464859 scopus 로고    scopus 로고
    • Optimal reference genes for normalization of qRT-PCR data from archival formalin-fixed, paraffin-embedded breast tumors controlling for tumor cell content and decay of mRNA
    • Tramm T., et al. Optimal reference genes for normalization of qRT-PCR data from archival formalin-fixed, paraffin-embedded breast tumors controlling for tumor cell content and decay of mRNA. Diagn. Mol. Pathol. 2013, 22(3):181-187.
    • (2013) Diagn. Mol. Pathol. , vol.22 , Issue.3 , pp. 181-187
    • Tramm, T.1
  • 28
    • 84887824759 scopus 로고    scopus 로고
    • High-throughput identification of reference genes for research and clinical RT-qPCR analysis of breast cancer samples
    • Maltseva D.V., et al. High-throughput identification of reference genes for research and clinical RT-qPCR analysis of breast cancer samples. J. Clin. Bioinform. 2013, 3(1):13.
    • (2013) J. Clin. Bioinform. , vol.3 , Issue.1 , pp. 13
    • Maltseva, D.V.1
  • 29
    • 84878388816 scopus 로고    scopus 로고
    • Reference gene for primary culture of prostate cancer cells
    • Souza A.F., et al. Reference gene for primary culture of prostate cancer cells. Mol. Biol. Rep. 2013, 40(4):2955-2962.
    • (2013) Mol. Biol. Rep. , vol.40 , Issue.4 , pp. 2955-2962
    • Souza, A.F.1
  • 30
    • 84874019407 scopus 로고    scopus 로고
    • Identification of cell-specific patterns of reference gene stability in quantitative reverse-transcriptase polymerase chain reaction studies of embryonic, placental and neural stem models of prenatal ethanol exposure
    • Carnahan M.N., et al. Identification of cell-specific patterns of reference gene stability in quantitative reverse-transcriptase polymerase chain reaction studies of embryonic, placental and neural stem models of prenatal ethanol exposure. Alcohol 2013, 47(2):109-120.
    • (2013) Alcohol , vol.47 , Issue.2 , pp. 109-120
    • Carnahan, M.N.1
  • 31
    • 1542469713 scopus 로고    scopus 로고
    • Measurement of gene expression in archival paraffin-embedded tissues: development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay
    • Cronin M., et al. Measurement of gene expression in archival paraffin-embedded tissues: development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay. Am. J. Pathol. 2004, 164(1):35-42.
    • (2004) Am. J. Pathol. , vol.164 , Issue.1 , pp. 35-42
    • Cronin, M.1
  • 32
    • 84879012106 scopus 로고    scopus 로고
    • Gene expression analysis of normal and colorectal cancer tissue samples from fresh frozen and matched formalin-fixed, paraffin-embedded (FFPE) specimens after manual and automated RNA isolation
    • Kalmar A., et al. Gene expression analysis of normal and colorectal cancer tissue samples from fresh frozen and matched formalin-fixed, paraffin-embedded (FFPE) specimens after manual and automated RNA isolation. Methods 2013, 59(1):S16-S19.
    • (2013) Methods , vol.59 , Issue.1
    • Kalmar, A.1
  • 33
    • 84864884853 scopus 로고    scopus 로고
    • Enhanced stability of microRNA expression facilitates classification of FFPE tumour samples exhibiting near total mRNA degradation
    • Hall J.S., et al. Enhanced stability of microRNA expression facilitates classification of FFPE tumour samples exhibiting near total mRNA degradation. Br. J. Cancer 2012, 107(4):684-694.
    • (2012) Br. J. Cancer , vol.107 , Issue.4 , pp. 684-694
    • Hall, J.S.1


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