메뉴 건너뛰기




Volumn 107, Issue 4, 2012, Pages 684-694

Enhanced stability of microRNA expression facilitates classification of FFPE tumour samples exhibiting near total mRNA degradation

Author keywords

degradation; FFPE; microarray; microRNA; profiling; snoRNA

Indexed keywords

FORMALDEHYDE; MICRORNA; PARAFFIN; SMALL NUCLEOLAR RNA;

EID: 84864884853     PISSN: 00070920     EISSN: 15321827     Source Type: Journal    
DOI: 10.1038/bjc.2012.294     Document Type: Article
Times cited : (113)

References (41)
  • 1
    • 77954377995 scopus 로고    scopus 로고
    • Quantitative expression profiling in formalin-fixed paraffin-embedded samples by affymetrix microarrays
    • Abdueva D, Wing M, Schaub B, Triche T, Davicioni E (2010) Quantitative expression profiling in formalin-fixed paraffin-embedded samples by affymetrix microarrays. J Mol Diagn 12: 409-417
    • (2010) J Mol Diagn , vol.12 , pp. 409-417
    • Abdueva, D.1    Wing, M.2    Schaub, B.3    Triche, T.4    Davicioni, E.5
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57: 289-300
    • (1995) J R Stat Soc ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 34548182286 scopus 로고    scopus 로고
    • Tissue preparation: Tissue issues
    • Blow N (2007) Tissue preparation: tissue issues. Nature 448: 959-963
    • (2007) Nature , vol.448 , pp. 959-963
    • Blow, N.1
  • 7
    • 0242269027 scopus 로고    scopus 로고
    • P63 and EGFR as prognostic predictors in stage IIB radiation-treated cervical squamous cell carcinoma
    • Cho NH, Kim YB, Park TK, Kim GE, Park K, Song KJ (2003) P63 and EGFR as prognostic predictors in stage IIB radiation-treated cervical squamous cell carcinoma. Gynecol Oncol 91: 346-353
    • (2003) Gynecol Oncol , vol.91 , pp. 346-353
    • Cho, N.H.1    Kim, Y.B.2    Park, T.K.3    Kim, G.E.4    Park, K.5    Song, K.J.6
  • 8
    • 77449115589 scopus 로고    scopus 로고
    • An optimized RNA extraction method from archival formalin-fixed paraffin-embedded tissue
    • Chung JY, Hewitt SM (2010) An optimized RNA extraction method from archival formalin-fixed paraffin-embedded tissue. Methods Mol Biol 611: 19-27
    • (2010) Methods Mol Biol , vol.611 , pp. 19-27
    • Chung, J.Y.1    Hewitt, S.M.2
  • 9
    • 1542469713 scopus 로고    scopus 로고
    • Measurement of gene expression in archival paraffinembedded tissues: Development and performance of a 92-gene reverse transcriptase-polymerase chain reaction assay
    • Cronin M, Pho M, Dutta D, Stephans JC, Shak S, Kiefer MC, Esteban JM, Baker JB (2004) Measurement of gene expression in archival paraffinembedded tissues: development and performance of a 92-gene reverse transcriptase- polymerase chain reaction assay. Am J Pathol 164: 35-42
    • (2004) Am J Pathol , vol.164 , pp. 35-42
    • Cronin, M.1    Pho, M.2    Dutta, D.3    Stephans, J.C.4    Shak, S.5    Kiefer, M.C.6    Esteban, J.M.7    Baker, J.B.8
  • 13
    • 79951938429 scopus 로고    scopus 로고
    • Radiotherapy with concurrent carbogen and nicotinamide in bladder carcinoma
    • Hoskin PJ, Rojas AM, Bentzen SM, Saunders MI (2010) Radiotherapy with concurrent carbogen and nicotinamide in bladder carcinoma. J Clin Oncol 28: 4912-4918
    • (2010) J Clin Oncol , vol.28 , pp. 4912-4918
    • Hoskin, P.J.1    Rojas, A.M.2    Bentzen, S.M.3    Saunders, M.I.4
  • 18
    • 30844442607 scopus 로고    scopus 로고
    • The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
    • Kishore S, Stamm S (2006) The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 311: 230-232
    • (2006) Science , vol.311 , pp. 230-232
    • Kishore, S.1    Stamm, S.2
  • 20
    • 23444456437 scopus 로고    scopus 로고
    • Effects of RNA degradation on gene expression analysis of human postmortem tissues
    • Lee J, Hever A, Willhite D, Zlotnik A, Hevezi P (2005) Effects of RNA degradation on gene expression analysis of human postmortem tissues. FASEB J 19: 1356-1358
    • (2005) FASEB J , vol.19 , pp. 1356-1358
    • Lee, J.1    Hever, A.2    Willhite, D.3    Zlotnik, A.4    Hevezi, P.5
  • 22
    • 34447506198 scopus 로고    scopus 로고
    • Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells
    • Li J, Smyth P, Flavin R, Cahill S, Denning K, Aherne S, Guenther SM, O'Leary JJ, Sheils O (2007) Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells. BMC Biotechnol 7: 36
    • (2007) BMC Biotechnol , vol.7 , pp. 36
    • Li, J.1    Smyth, P.2    Flavin, R.3    Cahill, S.4    Denning, K.5    Aherne, S.6    Guenther, S.M.7    O'Leary, J.J.8    Sheils, O.9
  • 23
    • 70350718130 scopus 로고    scopus 로고
    • Methods comparison for high-resolution transcriptional analysis of archival material on Affymetrix Plus 2.0 and Exon 1.0 microarrays
    • Linton K, Hey Y, Dibben S, Miller C, Freemont A, Radford J, Pepper S (2009) Methods comparison for high-resolution transcriptional analysis of archival material on Affymetrix Plus 2.0 and Exon 1.0 microarrays. Biotechniques 47: 587-596
    • (2009) Biotechniques , vol.47 , pp. 587-596
    • Linton, K.1    Hey, Y.2    Dibben, S.3    Miller, C.4    Freemont, A.5    Radford, J.6    Pepper, S.7
  • 25
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 27
    • 84858791727 scopus 로고    scopus 로고
    • The genetics of dyskeratosis congenita
    • Mason PJ, Bessler M (2011) The genetics of dyskeratosis congenita. Cancer Genet 204: 635-645
    • (2011) Cancer Genet , vol.204 , pp. 635-645
    • Mason, P.J.1    Bessler, M.2
  • 28
    • 0027455329 scopus 로고
    • Small nuclear RNAs in messenger RNA and ribosomal RNA processing
    • Mattaj IW, Tollervey D, Seraphin B (1993) Small nuclear RNAs in messenger RNA and ribosomal RNA processing. FASEB J 7: 47-53
    • (1993) FASEB J , vol.7 , pp. 47-53
    • Mattaj, I.W.1    Tollervey, D.2    Seraphin, B.3
  • 29
    • 33847196451 scopus 로고    scopus 로고
    • Immunohistochemistry as a diagnostic aid in cervical pathology
    • McCluggage WG (2007) Immunohistochemistry as a diagnostic aid in cervical pathology. Pathology 39: 97-111
    • (2007) Pathology , vol.39 , pp. 97-111
    • McCluggage, W.G.1
  • 32
    • 42449098100 scopus 로고    scopus 로고
    • Normalization of microRNA expression levels in quantitative RT-PCR assays: Identification of suitable reference RNA targets in normal and cancerous human solid tissues
    • Peltier HJ, Latham GJ (2008) Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues. RNA 14: 844-852
    • (2008) RNA , vol.14 , pp. 844-852
    • Peltier, H.J.1    Latham, G.J.2
  • 35
    • 41649119636 scopus 로고    scopus 로고
    • RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: A comparison of column purification and magnetic bead-based technologies
    • Ribeiro-Silva A, Zhang H, Jeffrey SS (2007) RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: a comparison of column purification and magnetic bead-based technologies. BMC Mol Biol 8: 118
    • (2007) BMC Mol Biol , vol.8 , pp. 118
    • Ribeiro-Silva, A.1    Zhang, H.2    Jeffrey, S.S.3
  • 36
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 37
    • 80053572217 scopus 로고    scopus 로고
    • Quality control parameters on a large dataset of regionally dissected human control brains for whole genome expression studies
    • Trabzuni D, Ryten M, Walker R, Smith C, Imran S, Ramasamy A, Weale ME, Hardy J (2011) Quality control parameters on a large dataset of regionally dissected human control brains for whole genome expression studies. J Neurochem 119: 275-282
    • (2011) J Neurochem , vol.119 , pp. 275-282
    • Trabzuni, D.1    Ryten, M.2    Walker, R.3    Smith, C.4    Imran, S.5    Ramasamy, A.6    Weale, M.E.7    Hardy, J.8
  • 40
    • 0030766981 scopus 로고    scopus 로고
    • The independence of intrinsic radiosensitivity as a prognostic factor for patient response to radiotherapy of carcinoma of the cervix
    • West CM, Davidson SE, Roberts SA, Hunter RD (1997) The independence of intrinsic radiosensitivity as a prognostic factor for patient response to radiotherapy of carcinoma of the cervix. Br J Cancer 76: 1184-1190
    • (1997) Br J Cancer , vol.76 , pp. 1184-1190
    • West, C.M.1    Davidson, S.E.2    Roberts, S.A.3    Hunter, R.D.4
  • 41
    • 38549116202 scopus 로고    scopus 로고
    • X: Map: Annotation and visualization of genome structure for Affymetrix exon array analysis
    • Yates T, Okoniewski MJ, Miller CJ (2008) X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis. Nucleic Acids Res 36: D780-D786
    • (2008) Nucleic Acids Res , vol.36
    • Yates, T.1    Okoniewski, M.J.2    Miller, C.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.