Instability of the faecal microbiota in diarrhoea-predominant irritable bowel syndrome

FEMS Microbiology Ecology

Volumn 86, Issue 3, 2013, Pages 581-589

  Durbán, Ana ^a   Abellán, Juan J ^a   Jiménez Hernández, Nuria ^a   Artacho, Alejandro ^a   Garrigues, Vicente ^b   Ortiz, Vicente ^b   Ponce, Julio ^b   Latorre, Amparo ^a,c   Moya, Andrés ^a,c  

^a UNIVERSITY OF VALENCIA   (Spain)

^b HOSPITAL UNIVERSITARIO LA FE   (Spain)

^c CIBER EPIDEMIOLOGÍA Y SALUD PÚBLICA CIBERESP   (Spain)

Author keywords

Faecal microbiota; Follow up; Irritable bowel syndrome; Metagenomics; Metatranscriptomics

Indexed keywords

BACTERIUM; COMMUNITY COMPOSITION; DISEASE; ETIOLOGY; GENE EXPRESSION; RESEARCH;

AGED; ARTICLE; BACTERIUM; CLASSIFICATION; COLON; DIARRHEA; FECES; FECES MICROFLORA; FEMALE; FOLLOW-UP; GENETICS; HUMAN; INTESTINE MUCOSA; IRRITABLE COLON; ISOLATION AND PURIFICATION; MALE; METAGENOMICS; METATRANSCRIPTOMICS; MICROBIOLOGY; MICROFLORA; MIDDLE AGED; PATHOPHYSIOLOGY; YOUNG ADULT;

FAECAL MICROBIOTA; FOLLOW-UP; IRRITABLE BOWEL SYNDROME; METAGENOMICS; METATRANSCRIPTOMICS;

AGED; BACTERIA; COLON; DIARRHEA; FECES; FEMALE; HUMANS; INTESTINAL MUCOSA; IRRITABLE BOWEL SYNDROME; MALE; MICROBIOTA; MIDDLE AGED; YOUNG ADULT;

EID: 84887615888     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/1574-6941.12184     Document Type: Article

References (35)

1. Albert MJ, Bhat P, Rajan D, Maiya PP, Pereira SM & Baker SJ (1978) Faecal flora of south indian infants and young children in health and with acute gastroenteritis. J Med Microbiol 11: 137-143.
2. Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
3. Balamurugan R, Janardhan HP, George S, Raghava MV, Muliyil J & Ramakrishna BS (2008) Molecular studies of fecal anaerobic commensal bacteria in acute diarrhea in children. J Pediatr Gastroenterol Nutr 46: 514-519.
4. Basseri RJ, Weitsman S, Barlow GM & Pimentel M (2011) Antibiotics for the treatment of irritable bowel syndrome. Gastroenterol Hepatol 7: 455-493.
5. Carroll IM, Ringel-Kulka T, Siddle JP & Ringel Y (2012) Alterations in composition and diversity of the intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome. Neurogastroenterol Motil 24: 521-530.
6. Chang JY, Antonopoulos DA, Kalra A, Tonelli A, Khalife WT, Schmidt TM & Young VB (2008) Decreased diversity of the fecal microbiome in recurrent Clostridium difficile-associated diarrhea. J Infect Dis 197: 435-438.
7. Collins SM & Bercik P (2009) The relationship between intestinal microbiota and the central nervous system in normal gastrointestinal function and disease. Gastroenterology 136: 2003-2014.
8. Dethlefsen L & Relman DA (2011) Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. P Natl Acad Sci USA 108(suppl 1): 4554-4561.
9. Drossman DA (1999) Do psychosocial factors define symptom severity and patient status in irritable bowel syndrome? Am J Med 107: 41S-50S.
10. Duboc H, Rainteau D, Rajca S et al. (2012) Increase in fecal primary bile acids and dysbiosis in patients with diarrhea-predominant irritable bowel syndrome. Neurogastroenterol Motil 24: 513-520.
11. Durbán A, Abellán JJ, Jiménez-Hernández N, Ponce M, Ponce J, Sala T, D'Auria G, Latorre A & Moya A (2011) Assessing gut microbial diversity from feces and rectal mucosa. Microb Ecol 61: 123-133.
12. Durbán A, Abellán JJ, Jiménez-Hernández N, Salgado P, Ponce M, Ponce J, Garrigues V, Latorre A & Moya A (2012) Structural alterations of faecal and mucosa-associated bacterial communities in irritable bowel syndrome. Environ Microbiol Rep 4: 242-247.
13. Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
14. Gosalbes MJ, Durbán A, Pignatelli M, Abellán JJ, Jiménez-Hernández N, Pérez-Cobas AE, Latorre A & Moya A (2011) Metatranscriptomic approach to analyze the functional human gut microbiota. PLoS One 6: e17447.
15. Hayashi H, Takahashi R, Nishi T, Sakamoto M & Benno Y (2005) Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J Med Microbiol 54: 1093-1101.
16. Hungin AP, Chang L, Locke GR, Dennis EH & Barghout V (2005) Irritable bowel syndrome in the United States: prevalence, symptom patterns and impact. Aliment Pharmacol Ther 21: 1365-1375.
17. Kajander K, Myllyluoma E, Rajilić-Stojanović M, Kyrönpalo S, Rasmussen M, Järvenpää S, Zoetendal EG, de Vos WM, Vapaatalo H & Korpela R (2008) Clinical trial: multispecies probiotic supplementation alleviates the symptoms of irritable bowel syndrome and stabilizes intestinal microbiota. Aliment Pharmacol Ther 27: 48-57.
18. Krogius-Kurikka L, Lyra A, Malinen E, Aarnikunnas J, Tuimala J, Paulin L, Mäkivuokko H, Kajander K & Palva A (2009) Microbial community analysis reveals high level phylogenetic alterations in the overall gastrointestinal microbiota of diarrhoea-predominant irritable bowel syndrome sufferers. BMC Gastroenterol 9: 95.
19. Le Gall G, Noor SO, Ridgway K, Scovell L, Jamieson C, Johnson IT, Colquhoun IJ, Kemsley EK & Narbad A (2011) Metabolomics of fecal extracts detects altered metabolic activity of gut microbiota in ulcerative colitis and irritable bowel syndrome. J Proteome Res 10: 4208-4218.
20. Lewis SJ & Heaton KW (1997) Stool form scale as a useful guide to intestinal transit time. Scand J Gastroenterol 32: 920-924.
21. Longstreth GF, Thompson WG, Chey WD, Houghton LA, Mearin F & Spiller RC (2006) Functional bowel disorders. Gastroenterology 130: 1480-1491.
22. Mättö J, Maunuksela L, Kajander K, Palva A, Korpela R, Kassinen A & Saarela M (2005) Composition and temporal stability of gastrointestinal microbiota in irritable bowel syndrome - a longitudinal study in IBS and control subjects. FEMS Immunol Med Microbiol 43: 213-222.
23. Maukonen J, Satokari R, Mättö J, Söderlund H, Mattila-Sandholm T & Saarela M (2006) Prevalence and temporal stability of selected clostridial groups in irritable bowel syndrome in relation to predominant faecal bacteria. J Med Microbiol 55: 625-633.
24. Moayyedi P, Ford AC, Talley NJ, Cremonini F, Foxx-Orenstein AE, Brandt LJ & Quigley EM (2010) The efficacy of probiotics in the treatment of irritable bowel syndrome: a systematic review. Gut 59: 325-332.
25. Monira S, Nakamura S, Gotoh K et al. (2013) Metagenomic profile of gut microbiota in children during cholera and recovery. Gut Pathog 5: 1.
26. Ponnusamy K, Choi JN, Kim J, Lee SY & Lee CH (2011) Microbial community and metabolomic comparison of irritable bowel syndrome faeces. J Med Microbiol 60: 817-827.
27. Qin J, Li R, Raes J et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65.
28. Salonen A, de Vos WM & Palva A (2010) Gastrointestinal microbiota in irritable bowel syndrome: present state and perspectives. Microbiology 156: 3205-3215.
29. Salzberg SL, Delcher AL, Kasif S & White O (1998) Microbial gene identification using interpolated Markov models. Nucleic Acids Res 26: 544-548.
30. Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS & Huttenhower C (2011) Metagenomic biomarker discovery and explanation. Genome Biol 12: R60.
31. Si JM, Yu YC, Fan YJ & Chen SJ (2004) Intestinal microecology and quality of life in irritable bowel syndrome patients. World J Gastroenterol 10: 1802-1805.
32. Simrén M, Barbara G, Flint HJ, Spiegel BM, Spiller RC, Vanner S, Verdu EF, Whorwell PJ, Zoetendal EG & Rome Foundation Committee (2013) Intestinal microbiota in functional bowel disorders: a Rome foundation report. Gut 62: 159-176.
33. Tana C, Umesaki Y, Imaoka A, Handa T, Kanazawa M & Fukudo S (2010) Altered profiles of intestinal microbiota and organic acids may be the origin of symptoms in irritable bowel syndrome. Neurogastroenterol Motil 22: 512-519.
34. Wang Q, Garrity GM, Tiedje JM & Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
35. Wu GD, Chen J, Hoffmann C et al. (2011) Linking long-term dietary patterns with gut microbial enterotypes. Science 334: 105-108.