Composition and temporal stability of gastrointestinal microbiota in irritable bowel syndrome - A longitudinal study in IBS and control subjects

FEMS Immunology and Medical Microbiology

Volumn 43, Issue 2, 2005, Pages 213-222

  Mättö, Jaana ^a   Maunuksela, Liisa ^a   Kajander, Kajsa ^b,c   Palva, Airi ^d   Riitta Korpela, ^b,c   Anna Kassinen, ^d   Saarela, Maria ^a  

^a VTT TECHNICAL RESEARCH CENTRE OF FINLAND   (Finland)

^b VALIO LTD   (Finland)

^c UNIVERSITY OF HELSINKI   (Finland)

^d UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Faecal; Intestinal microbiota; Irritable bowel syndrome; PCR DGGE

Indexed keywords

ADULT; AEROBIC BACTERIUM; AGED; ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL SPORE; BACTEROIDES; BIFIDOBACTERIUM; CLINICAL ARTICLE; COLIFORM BACTERIUM; CONTROLLED STUDY; CULTURE TECHNIQUE; DENATURING GRADIENT GEL ELECTROPHORESIS; ENTEROCOCCUS; FECES MICROFLORA; FEMALE; HUMAN; INTESTINE FLORA; IRRITABLE COLON; LACTOBACILLUS; LONGITUDINAL STUDY; MALE; NUCLEOTIDE SEQUENCE; PREVALENCE; PRIORITY JOURNAL; YEAST;

ADULT; AEROBIOSIS; AGED; ANAEROBIOSIS; BACTERIA; COLONY COUNT, MICROBIAL; DNA, BACTERIAL; DNA, FUNGAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENTEROBACTERIACEAE; FECES; FEMALE; GASTROINTESTINAL TRACT; HUMANS; IRRITABLE BOWEL SYNDROME; MALE; MIDDLE AGED; POLYMERASE CHAIN REACTION; SPORES, BACTERIAL; YEASTS;

EID: 12844273701     PISSN: 09288244     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsim.2004.08.009     Document Type: Article

References (41)

1. N.J. Talley Irritable bowel syndrome: definition, diagnosis and epidemiology Bailieres's Clin. Gastroenterol. 13 1999 371 384
2. W.G. Thompson, G.F. Longstreth, D.A. Drossman, K.W. Heaton, E.J. Irvine, and S.A. Müller-Lissner Functional bowel disorders and functional abdominal pain Gut 45 suppl 2 1999 II43 II47
3. M. Camilleri Management of the irritable bowel syndrome Gastroenterology 120 2001 652 668
4. J.A. Sach, and L. Chang Irritable bowel syndrome Curr. Treat. Opt. Gastroenterol. 5 2002 267 278
5. G.F. Longstreth, A. Wilson, K. Knight, J. Wong, C.-F. Chiou, V. Barghout, F. Frech, and J.J. Ofman Irritable bowel syndrome, health care use, and costs: A US managed care perspective Am. J. Gastroenterol. 98 2003 600 607
6. B.J. Horwitz, and R.S. Fisher Current concepts: The irritable bowel syndrome New Engl. J. Med. 344 2001 1846 1850
7. K.A. Gwee Postinfectious irritable bowel syndrome Curr. Treatm. Opt. Gastroenterol. 4 2001 287 291
8. S.M. Collins, T. Piche, and P. Rampal The putative role of imflammation in the irritable bowel syndrome Gut 49 2001 743 745
9. T.S. King, M. Elia, and J.O. Hunter Abnormal colonic fermentation in irritable bowel syndrome Lancet 352 1998 1187 1189
10. A. Attar, B. Flourié, J.-C. Rambaud, C. Franchisseur, P. Ruszniiewski, and Y. Bouhnik Antibiotic efficacy in small intestinal bacterial overgrowth-related chronic diarrhea: a crossover, randomized trial Gastroenterology 117 1999 794 797
11. M. Pimentel, E.J. Chow, and H.C. Lin Eradication of small intestinal bacterial overgrowth reduces symptoms of irritable bowel syndrome Am. J. Gastroenterol. 95 2000 3503 3506
12. A. Balsari, A. Ceccarelli, F. Dubini, E. Fesce, and G. Poli The fecal microbial population in the irritable bowel syndrome Microbiologica 5 1982 185 194
13. H.K. Bradley, G.M. Wyatt, C.E. Bayliss, and J.O. Hunter Instability in the faecal flora of a patient suffering from food-related irritable bowel syndrome J. Med. Microbiol. 23 1987 29 32
14. J.A.J. Madden, and J.O. Hunter A review of the role of the gut microflora in irritable bowel syndrome and the effects of probiotics Br. J. Nutr. 88 2002 S67 S72
15. N.J. Talley Pharmacologic therapy for the irritable bowel syndrome Am. J. Gastroenterol. 98 2003 750 758
16. M. Petitpierre, P. Gumowski, and J.-P. Girard Irritable bowel syndrome and hypersensitivity to food Ann. Allergy 54 1985 538 540
17. S. Nobaek, M.-L. Johansson, G. Molin, S. Ahrné, and B. Jeppson Alteration of intestinal microflora is associated with reduction in abdominal bloating and pain in patients with irritable bowel syndrome Am. J. Gastroenterol. 95 2000 1231 1238
18. K. Niedzielin, H. Kordecki, and B. Birkenfeld A controlled, double-blind, randomized study on the efficacy of Lactobacillus plantarum 299V in patients with irritable bowel syndrome Eur. J. Gastroenterol. Hepatol. 13 2001 1143 1147
19. H.J. Kim, M. Camilleri, S. McKinzie, M.B. Lempke, B.B. Burton, G.M. Thomforde, and A.R. Zinsmeister A randomised controlled trial of a probiotic, VSL#3,on gut transit and symptoms in diarrhoea-predominant irritable bowel syndrome Aliment. Pharmacol. Ther. 1 2003 895 904
20. M.I. Alvarez-Olmos, and R.A. Oberhelman Probiotic agents and infectious diseases: A modern perspective on a traditional therapy Clin. Infect. Dis. 32 2001 1567 1576
21. H. Beerens Detection of bifidobacteria by using propionic acid as a selective agent Appl. Environ. Microbiol. 57 1991 2418 2419
22. R.M. Atlas Handbook of Microbiological Media 1993 CRC Press Inc. Boca Raton, FL, USA
23. E.G. Zoetendal, A.D.L. Akkermans, W.M. Akkermans-van Vliet, J.A.G.M. de Visser, and W.M. de Vos The host genotype affects the bacterial community in the human gastrointestinal tract Microbiol. Ecol. Health Dis. 13 2001 129 134
24. U. Nübel, B. Engelen, A. Felske, J. Snaidr, A. Wieshuber, R.I. Amann, W. Ludwig, and H. Backhaus Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis J. Bacteriol. 178 1996 5636 5643
25. C.E. Bayliss, H.K. Bradley, V. Alun Jones, and J.O. Hunter Some aspects of colonic microbial activity in irritable bowel syndrome associated with food intolerance Ann. Ist. Super. Sanita 22 1986 959 964
26. J.A.J. Madden, S. Plummer, S. Sen, K. Dear, S. Tarry, and J.O. Hunter Comparison of the caecal and faecal microflora of healthy subjects and patients with irritable bowel syndrome (IBS) Gut 48 Suppl1 2001 A58
27. S.M. Finegold, V.L. Sutter, J.D. Boyle, and K. Shimada The normal flora of ileostomy and transverse colostomy effluents J. Infect. Dis. 122 1970 376 381
28. M.J. Hopkins, R. Sharp, and G.T. Macfarlane Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles Gut 48 2001 198 205
29. P. Marteau, P. Pochart, J. Dore, C. Bera-Maillet, A. Bernalier, and G. Corthier Comparative study of bacterial groups within the human cecal and fecal microbiota Appl. Environ. Microbiol. 67 2001 4939 4942
30. M.D. Collins, P.A. Lawson, A. Willems, J.J. Cordoba, J. Fernandez-Garayzabal, P. Gaecia, J. Cai, H. Hippe, and J.A.E. Farrow The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations Int. J. Syst. Bacteriol. 144 1994 812 826
31. M. Tvede, and L. Willumsen Clostridium difficile in patients with irritable bowel syndrome and ulcerative colitis Lancet 15 1982 1124
32. A. Suau, R. Bonnet, M. Sutren, J.-J. Godon, G. Gibson, M.D. Collins, and J. Doré Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut Appl. Environ. Microbiol. 65 1999 4799 4807
33. A. Sghir, G. Gramet, A. Suau, V. Rochet, P. Pochart, and J. Doré Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization Appl. Environ. Microbiol. 66 2000 1166 2263
34. L. Rigottier-Gois, A.-G. Le Bourhis, G. Gramet, V. Rochet, and J. Doré Fluorescent in situ hybridizateion combined with flow cytometry and hybridization of total RNA to analyse the composition of microbial communities in human faeces using 16S rRNA probes FEMS Microbiol. Ecol. 43 2003 237 245
35. P. Seksik, L. Rigottier-Gois, G. Gramet, M. Sutren, P. Pochart, P. Marteau, R. Jian, and J. Doré Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon Gut 52 2003 237 242
36. E.G. Zoetendal, A.D.L. Akkermans, and W.M. de Vos Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria Appl. Environ. Microbiol. 64 1998 3854 3859
37. T. Vanhoutte, G. Huys, E. De Brandt, and J. Swings Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers FEMS Microbiol. Ecol. 48 2004 437 446
38. C. Edlund, and C.E. Nord Effect on the human normal microflora of oral antibiotics for treatment of urinary tract infections J. Antimicrob. Chemother. 46 2000 S41 S48
39. C.J. Donskey, A.M. Hujer, S.M. Das, N.J. Pultz, R.A. Bonomo, and L.B. Rice Use of denaturing gradient gel electrophoresis for analysis of the stool microbiota of hospitalized patients J. Microbiol. Meth. 54 2003 249 256
40. S. Bartosch, A. Fite, G.T. Macfarlane, and M.E.T. McMurdo Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota Appl. Environ. Microbiol. 70 2004 3575 3581
41. C.E. Nord, D.A. Gajjar, and D.M. Grasela Ecological impact of the des-F(6)-quinolone, BMS-284756, on the normal intestinal microflora Clin. Microbiol. Infect. 8 2002 229 239