Deciphering the zinc coordination properties of the prokaryotic zinc finger domain: The solution structure characterization of Ros87 H42A functional mutant

Journal of Inorganic Biochemistry

Volumn 131, Issue , 2014, Pages 30-36

  Palmieri, Maddalena ^a   Russo, Luigi ^a   Malgieri, Gaetano ^a   Esposito, Sabrina ^a   Baglivo, Ilaria ^a   Rivellino, Alessia ^a   Farina, Bianca Maria ^c   De Paola, Ivan ^b   Zaccaro, Laura ^b,c   Milardi, Danilo ^b   Isernia, Carla ^a,c   Pedone, Paolo Vincenzo ^a   Fattorusso, Roberto ^a,c  

^a Department of Environmental   (Italy)

^b CNR   (Italy)

^c UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

H D exchange; Metal binding proteins; NMR; Prokaryotic zinc finger

Indexed keywords

AMINO ACID DERIVATIVE; HISTIDINE DERIVATIVE; REACTIVE OXYGEN METABOLITE; ZINC;

ALPHA HELIX; ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; DNA BINDING; ISOTHERMAL TITRATION CALORIMETRY; NUCLEAR MAGNETIC RESONANCE; SPECTROPHOTOMETRY; ZINC FINGER MOTIF;

EUKARYOTA; PROKARYOTA;

H/D EXCHANGE; METAL BINDING PROTEINS; NMR; PROKARYOTIC ZINC FINGER;

AGROBACTERIUM TUMEFACIENS; BACTERIAL PROTEINS; BINDING SITES; DEUTERIUM; DNA; HISTIDINE; HYDROGEN; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; ZINC; ZINC FINGERS;

EID: 84887596747     PISSN: 01620134     EISSN: 18733344     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2013.10.016     Document Type: Article

References (39)

1. A.Y. Chou, J. Archdeacon, and C.I. Kado Proc. Natl. Acad. Sci. U. S. A. 95 1998 5293 5298
2. S. Esposito, I. Baglivo, G. Malgieri, L. Russo, L. Zaccaro, L.D. D'Andrea, M. Mammucari, B. Di Blasio, C. Isernia, R. Fattorusso, and P.V. Pedone Biochemistry vol. 45 2006 10394 10405
3. G. Malgieri, L. Russo, S. Esposito, I. Baglivo, L. Zaccaro, E.M. Pedone, B. Di Blasio, C. Isernia, P.V. Pedone, and R. Fattorusso Proc. Natl. Acad. Sci. U. S. A. 104 2007 17341 17346
4. I. Baglivo, L. Russo, S. Esposito, G. Malgieri, M. Renda, A. Salluzzo, B. Di Blasio, C. Isernia, R. Fattorusso, and P.V. Pedone Proc. Natl. Acad. Sci. U. S. A. 106 2009 6933 6938
5. L. Russo, M. Palmieri, I. Baglivo, S. Esposito, C. Isernia, G. Malgieri, P.V. Pedone, and R. Fattorusso Biomol. NMR Assign. 4 2010 55 57
6. C. Isernia, E. Bucci, M. Leone, L. Zaccaro, P. Di Lello, G. Digilio, S. Esposito, M. Saviano, B. Di Blasio, C. Pedone, P.V. Pedone, and R. Fattorusso Chembiochem 4 2003 171 180
7. C.A. Blasie, and J.M. Berg Biochemistry 43 2004 10600 10604
8. A.M. Rich, E. Bombarda, A.D. Schenk, P.E. Lee, E.H. Cox, A.M. Spuches, L.D. Hudson, B. Kieffer, and D.E. Wilcox J. Am. Chem. Soc. 134 2012 10405 10418
9. M.P. Foster, D.S. Wuttke, K.R. Clemens, W. Jahnke, I. Radhakrishnan, L. Tennant, M. Reymond, J. Chung, and P.E. Wright J. Biomol. NMR 12 1998 51 71
10. S. Grzesiek, H. Döbeli, R. Gentz, G. Garotta, A.M. Labhardt, and A. Bax Biochemistry 31 1992 8180 8190
11. D.S. Garrett, Y.J. Seok, A. Peterkofsky, G.M. Clore, and A.M. Gronenborn Biochemistry 36 1997 4393 4398
12. S. Grzesiek, A. Bax, G.M. Clore, A.M. Gronenborn, J.S. Hu, J. Kaufman, I. Palmer, S.J. Stahl, and P.T. Wingfield Nat. Struct. Biol. 3 1996 340 345
13. M. Ikura, L.E. Kay, and A. Bax Biochemistry 29 1990 4659 4667
14. S. Grzesiek, G.W. Vuister, and A. Bax J. Biomol. NMR 3 1993 487 493
15. N.S. Rao, P. Legault, D.R. Muhandiram, J. Greenblatt, J.L. Battiste, J.R. Williamson, and L.E. Kay J. Magn. Reson. B 113 1996 272 276
16. G.W. Vuister, F. Delaglio, and A. Bax J. Biomol. NMR 3 1993 67 80
17. M. Ottiger, F. Delaglio, and A. Bax J. Magn. Reson. 131 1998 373 378
18. M. Ottiger, and A. Bax J. Biomol. NMR 12 1998 361 372
19. M. Nilsson J. Magn. Reson. 200 2009 296 302
20. C. Bartels, T.H. Xia, M. Billeter, P. Güntert, and K. Wüthrich J. Biomol. NMR 6 1995 1 10
21. T. Herrmann, P. Güntert, and K. Wüthrich J. Mol. Biol. 319 2002 209 227
22. P. Güntert Methods Mol. Biol. 278 2004 353 378
23. N. Guex, and M.C. Peitsch Electrophoresis 18 1997 2714 2723
24. R. Koradi, M. Billeter, and K. Wüthrich J. Mol. Graph. vol. 14 1996 51 55 (29-32)
25. R.A. Laskowski, J.A. Rullmannn, M.W. MacArthur, R. Kaptein, and J.M. Thornton J. Biomol. NMR 8 1996 477 486
26. J.H. Viles, B.M. Duggan, E. Zaborowski, S. Schwarzinger, J.J. Huntley, G.J. Kroon, H.J. Dyson, and P.E. Wright J. Biomol. NMR 21 2001 1 9
27. S. Mori, C. Abeygunawardana, M.O. Johnson, and P.C. van Zijl J. Magn. Reson. B 108 1995 94 98
28. Y. Bai, J.S. Milne, L. Mayne, and S.W. Englander Proteins 17 1993 75 86
29. Y.Z. Zhang, Y. Paterson, and H. Roder Protein Sci. 4 1995 804 814
30. A. Hvidt, and S.O. Nielsen Adv. Protein Chem. 21 1966 287 386
31. E.E. Benson, and K. Linderstrom-Lang Biochim. Biophys. Acta 32 1959 579 581
32. A. Berger, and K. Linderstrom-Lang Arch. Biochem. Biophys. 69 1957 106 118
33. K. Linderstrom-Lang Biochim. Biophys. Acta vol. 18 1955 308
34. A. Nomura, and Y. Sugiura Inorg. Chem. 41 2002 3693 3698
35. E. Chekmeneva, R. Prohens, J.M. Díaz-Cruz, C. Ariño, and M. Esteban Anal. Biochem. 375 2008 82 89
36. C.A. Blasie, and J.M. Berg Biochemistry 41 2002 15068 15073
37. M. Palmieri, G. Malgieri, L. Russo, I. Baglivo, S. Esposito, F. Netti, A. Del Gatto, I. de Paola, L. Zaccaro, P.V. Pedone, C. Isernia, D. Milardi, and R. Fattorusso J Am Chem Soc 2013
38. L.E. Kay, D.A. Torchia, and A. Bax Biochemistry 28 1989 8972 8979
39. F. Netti, G. Malgieri, S. Esposito, M. Palmieri, I. Baglivo, C. Isernia, J.G. Omichinski, P.V. Pedone, N. Lartillot, and R. Fattorusso Mol. Biol. Evol. 30 2013 1504 1513