메뉴 건너뛰기




Volumn 30, Issue 7, 2013, Pages 1504-1513

An experimentally tested scenario for the structural evolution of eukaryotic Cys2His2 zinc fingers from eubacterial ros homologs

Author keywords

evolution; nuclear magnetic resonance; phylogenetics analysis; zinc finger domain

Indexed keywords

MUTANT PROTEIN; PROTEIN; ROS LIKE PROTEIN; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

EID: 84879343421     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mst068     Document Type: Article
Times cited : (24)

References (37)
  • 3
    • 0343459675 scopus 로고
    • The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
    • Bartels C, Xia TH, Billeter M, Güntert P, Wüthrich K. 1995. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J Biol NMR. 6:1-10.
    • (1995) J Biol NMR , vol.6 , pp. 1-10
    • Bartels, C.1    Xia, T.H.2    Billeter, M.3    Güntert, P.4    Wüthrich, K.5
  • 4
    • 0033952361 scopus 로고    scopus 로고
    • The origin of prokaryotic C2H2 zinc finger regulators
    • DOI 10.1016/S0966-842X(99)01679-0, PII S0966842X99016790
    • Bouhouche N, Syvanen M, Kado CI. 2000. The origin of prokaryotic C2H2 zinc finger regulators. Trends Microbiol. 8(2):77-81. (Pubitemid 30100331)
    • (2000) Trends in Microbiology , vol.8 , Issue.2 , pp. 77-81
    • Bouhouche, N.1    Syvanen, M.2    Kado, C.I.3
  • 5
    • 0344448273 scopus 로고
    • Coherence transfer by isotropicmixing: Application to proton correlation spectroscopy
    • Braunschweiler L, Ernst RR. 1983. Coherence transfer by isotropicmixing: application to proton correlation spectroscopy. J Magn Reson. 53(3):521-528.
    • (1983) J Magn Reson , vol.53 , Issue.3 , pp. 521-528
    • Braunschweiler, L.1    Ernst, R.R.2
  • 6
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17(4):540-552. (Pubitemid 30210700)
    • (2000) Molecular Biology and Evolution , vol.17 , Issue.4 , pp. 540-552
    • Castresana, J.1
  • 12
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • Finn RD, Clements J, Eddy SR. 2011. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 39(Web Server issue):W29-W37.
    • (2011) Nucleic Acids Res , vol.39 , Issue.WEB SERVER ISSUE
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 13
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M, Guindon S, Gascuel O. 2010. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol. 27(2):221-224.
    • (2010) Mol Biol Evol , vol.27 , Issue.2 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 14
    • 0033525788 scopus 로고    scopus 로고
    • Mitochondrial evolution
    • Gray MW, Burger G, Lang BF. 1999. Mitochondrial evolution. Science 283(5407):1476-1481.
    • (1999) Science , vol.283 , Issue.5407 , pp. 1476-1481
    • Gray, M.W.1    Burger, G.2    Lang, B.F.3
  • 15
    • 0035783063 scopus 로고    scopus 로고
    • Fold change in evolution of protein structures
    • Grishin NV. 2001. Fold change in evolution of protein structures. J Struct Biol. 134(2-3):167-185.
    • (2001) J Struct Biol , vol.134 , Issue.2-3 , pp. 167-185
    • Grishin, N.V.1
  • 17
    • 0343359244 scopus 로고
    • Investigation of exchange processes by two-dimensional NMR spectroscopy
    • Jeener J, Meier BH, Bachmann P, Ernst RR. 1979. Investigation of exchange processes by two-dimensional NMR spectroscopy. J Chem Phys. 71(11):4546-4553.
    • (1979) J Chem Phys , vol.71 , Issue.11 , pp. 4546-4553
    • Jeener, J.1    Meier, B.H.2    Bachmann, P.3    Ernst, R.R.4
  • 18
    • 0029032723 scopus 로고
    • Protein motifs 5. Zinc fingers
    • Klug A, Schwabe JW. 1995. Protein motifs 5. Zinc fingers. FASEB J. 9(8):597-604.
    • (1995) FASEB J , vol.9 , Issue.8 , pp. 597-604
    • Klug, A.1    Schwabe, J.W.2
  • 19
    • 0035253047 scopus 로고    scopus 로고
    • Zinc finger proteins: New insights into structural and functional diversity
    • DOI 10.1016/S0959-440X(00)00167-6
    • Laity JH, Lee BM, Wright PE. 2001. Zinc finger proteins: new insights into structural and functional diversity. Curr Opin Struct Biol. 11(1):39-46. (Pubitemid 32155550)
    • (2001) Current Opinion in Structural Biology , vol.11 , Issue.1 , pp. 39-46
    • Laity, J.H.1    Lee, B.M.2    Wright, P.E.3
  • 20
    • 69949126557 scopus 로고    scopus 로고
    • PhyloBayes 3: A Bayesian software package for phylogenetic reconstruction and molecular dating
    • Lartillot N, Lepage T, Blanquart S. 2009. PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Bioinformatics 25(17):2286-2288.
    • (2009) Bioinformatics , vol.25 , Issue.17 , pp. 2286-2288
    • Lartillot, N.1    Lepage, T.2    Blanquart, S.3
  • 21
    • 84866924443 scopus 로고    scopus 로고
    • Modeling protein evolution with several amino acid replacement matrices depending on site rates
    • Le SQ, Dang CC, Gascuel O. 2012. Modeling protein evolution with several amino acid replacement matrices depending on site rates. Mol Biol Evol. 29(10):2921-2936.
    • (2012) Mol Biol Evol , vol.29 , Issue.10 , pp. 2921-2936
    • Le, S.Q.1    Dang, C.C.2    Gascuel, O.3
  • 23
    • 80955180025 scopus 로고    scopus 로고
    • Zinc to cadmium replacement in the A. thaliana SUPERMAN Cys(2) His(2) zinc finger induces structural rearrangements of typical DNA base determinant positions
    • 12 Co-authors
    • Malgieri G, Zaccaro L, Leone M, et al. (12 co-authors). 2011. Zinc to cadmium replacement in the A. thaliana SUPERMAN Cys(2) His(2) zinc finger induces structural rearrangements of typical DNA base determinant positions. Biopolymers 95(11):801-810.
    • (2011) Biopolymers , vol.95 , Issue.11 , pp. 801-810
    • Malgieri, G.1    Zaccaro, L.2    Leone, M.3
  • 24
    • 0034307182 scopus 로고    scopus 로고
    • A mitochondrial origin for eukaryotic C2H2 zinc finger regulators?
    • Moreira D, Rodriguez-Valera F. 2000. A mitochondrial origin for eukaryotic C2H2 zinc finger regulators? Trends Microbiol. 8(10):448-450.
    • (2000) Trends Microbiol , vol.8 , Issue.10 , pp. 448-450
    • Moreira, D.1    Rodriguez-Valera, F.2
  • 25
    • 0031013382 scopus 로고    scopus 로고
    • The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode
    • DOI 10.1038/nsb0297-122
    • Omichinski JG, Pedone PV, Felsenfeld G, Gronenborn AM, Clore GM. 1997. The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode. Nat Struct Biol. 4(2):122-132. (Pubitemid 27066387)
    • (1997) Nature Structural Biology , vol.4 , Issue.2 , pp. 122-132
    • Omichinski, J.G.1    Pedone, P.V.2    Felsenfeld, G.3    Gronenborn, A.M.4    Clore, G.M.5
  • 26
    • 0031011235 scopus 로고    scopus 로고
    • The N-terminal fingers of chicken GATA-2 and GATA-3 are independent sequence-specific DNA binding domains
    • DOI 10.1093/emboj/16.10.2874
    • Pedone PV, Omichinski JG, Nony P, Trainor C, Gronenborn AM, Clore GM, Felsenfeld G. 1997. The N-terminal fingers of chicken GATA-2 and GATA-3 are independent sequence-specific DNA binding domains. EMBO J. 16(10):2874-2882. (Pubitemid 27226223)
    • (1997) EMBO Journal , vol.16 , Issue.10 , pp. 2874-2882
    • Pedone, P.V.1    Omichinski, J.G.2    Nony, P.3    Trainor, C.4    Gronenborn, A.M.5    Clore, G.M.6    Felsenfeld, G.7
  • 27
    • 53749090508 scopus 로고    scopus 로고
    • Empirical profile mixture models for phylogenetic reconstruction
    • Quang le S, Gascuel O, Lartillot N. 2008. Empirical profile mixture models for phylogenetic reconstruction. Bioinformatics 24(20):2317-2323.
    • (2008) Bioinformatics , vol.24 , Issue.20 , pp. 2317-2323
    • Quang Le, S.1    Gascuel, O.2    Lartillot, N.3
  • 30
    • 41849110846 scopus 로고    scopus 로고
    • Structural evolution of the protein kinaselike superfamily
    • Scheeff ED, Bourne PE. 2005. Structural evolution of the protein kinaselike superfamily. PLoS Comput Biol. 1(5):e49.
    • (2005) PLoS Comput Biol , vol.1 , Issue.5
    • Scheeff, E.D.1    Bourne, P.E.2
  • 31
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider TD, Stephens RM. 1990. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 18(20):6097-6100.
    • (1990) Nucleic Acids Res , vol.18 , Issue.20 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 32
    • 33747863926 scopus 로고    scopus 로고
    • BAli-Phy: Simultaneous Bayesian inference of alignment and phylogeny
    • DOI 10.1093/bioinformatics/btl175
    • Suchard MA, Redelings BD. 2006. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics 22(16): 2047-2048. (Pubitemid 44283019)
    • (2006) Bioinformatics , vol.22 , Issue.16 , pp. 2047-2048
    • Suchard, M.A.1    Redelings, B.D.2
  • 33
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • DOI 10.1080/10635150701472164, PII 780704285
    • Talavera G, Castresana J. 2007. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol. 56(4):564-577. (Pubitemid 47171631)
    • (2007) Systematic Biology , vol.56 , Issue.4 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 34
    • 0035865250 scopus 로고    scopus 로고
    • Expressing the human genome
    • DOI 10.1038/35057011
    • Tupler R, Perini G, Green MR. 2001. Expressing the human genome. Nature 409(6822):832-833. (Pubitemid 32165335)
    • (2001) Nature , vol.409 , Issue.6822 , pp. 832-833
    • Tupler, R.1    Perini, G.2    Green, M.R.3
  • 35
    • 0026597879 scopus 로고
    • The chemical shift index: A fast and simple method for the assignment of protein secondary structure through NMR spectroscopy
    • Wishart DS, Sykes BD, Richards FM. 1992. The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy. Biochemistry 31(6):1647-1651.
    • (1992) Biochemistry , vol.31 , Issue.6 , pp. 1647-1651
    • Wishart, D.S.1    Sykes, B.D.2    Richards, F.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.