-
1
-
-
79952638264
-
Cellular decision making and biological noise: From microbes to mammals
-
Balázsi G, van Oudenaarden A, Collins JJ (2011) Cellular decision making and biological noise: From microbes to mammals. Cell 144(6):910-925.
-
(2011)
Cell
, vol.144
, Issue.6
, pp. 910-925
-
-
Balázsi, G.1
Van Oudenaarden, A.2
Collins, J.J.3
-
2
-
-
70450198396
-
Epithelial-mesenchymal transitions in development and disease
-
Thiery JP, Acloque H, Huang RY, Nieto MA (2009) Epithelial-mesenchymal transitions in development and disease. Cell 139(5):871-890.
-
(2009)
Cell
, vol.139
, Issue.5
, pp. 871-890
-
-
Thiery, J.P.1
Acloque, H.2
Huang, R.Y.3
Nieto, M.A.4
-
3
-
-
67649528138
-
Collective cell migration in morphogenesis, regeneration and cancer
-
Friedl P, Gilmour D (2009) Collective cell migration in morphogenesis, regeneration and cancer. Nat Rev Mol Cell Biol 10(7):445-457.
-
(2009)
Nat Rev Mol Cell Biol
, vol.10
, Issue.7
, pp. 445-457
-
-
Friedl, P.1
Gilmour, D.2
-
4
-
-
84887131202
-
Emt in developmental morphogenesis
-
10.1016/j. canlet.2013.02.037
-
Nakaya Y, Sheng G (2013) EMT in developmental morphogenesis. Cancer Lett, 10.1016/j. canlet.2013.02.037.
-
(2013)
Cancer Lett
-
-
Nakaya, Y.1
Sheng, G.2
-
5
-
-
77954860342
-
Epithelial-mesenchymal transition in cancer: Parallels between normal development and tumor progression
-
Micalizzi DS, Farabaugh SM, Ford HL (2010) Epithelial-mesenchymal transition in cancer: Parallels between normal development and tumor progression. J Mammary Gland Biol Neoplasia 15(2):117-134.
-
(2010)
J Mammary Gland Biol Neoplasia
, vol.15
, Issue.2
, pp. 117-134
-
-
Micalizzi, D.S.1
Farabaugh, S.M.2
Ford, H.L.3
-
6
-
-
78649369742
-
The epithelial-mesenchymal transition (emt) phenomenon
-
Savagner P (2010) The epithelial-mesenchymal transition (EMT) phenomenon. Ann Oncol 21(Suppl 7):vii89-vii92.
-
(2010)
Ann Oncol
, vol.21
, Issue.SUPPL. 7
-
-
Savagner, P.1
-
7
-
-
84873811988
-
Circulating breast tumor cells exhibit dynamic changes in epithelial and mesenchymal composition
-
Yu M, et al. (2013) Circulating breast tumor cells exhibit dynamic changes in epithelial and mesenchymal composition. Science 339(6119):580-584.
-
(2013)
Science
, vol.339
, Issue.6119
, pp. 580-584
-
-
Yu, M.1
-
8
-
-
68949155116
-
Emt 2.0: Shaping epithelia through collective migration
-
Revenu C, Gilmour D (2009) EMT 2.0: Shaping epithelia through collective migration. Curr Opin Genet Dev 19(4):338-342.
-
(2009)
Curr Opin Genet Dev
, vol.19
, Issue.4
, pp. 338-342
-
-
Revenu, C.1
Gilmour, D.2
-
9
-
-
77957551870
-
A mesenchymal-to-epithelial transition initiates and is required for the nuclear reprogramming of mouse fibroblasts
-
Li R, et al. (2010) A mesenchymal-to-epithelial transition initiates and is required for the nuclear reprogramming of mouse fibroblasts. Cell Stem Cell 7(1):51-63.
-
(2010)
Cell Stem Cell
, vol.7
, Issue.1
, pp. 51-63
-
-
Li, R.1
-
10
-
-
77956320116
-
Functional genomics reveals a bmp-driven mesenchymal- to-epithelial transition in the initiation of somatic cell reprogramming
-
Samavarchi-Tehrani P, et al. (2010) Functional genomics reveals a BMP-driven mesenchymal- to-epithelial transition in the initiation of somatic cell reprogramming. Cell Stem Cell 7(1):64-77.
-
(2010)
Cell Stem Cell
, vol.7
, Issue.1
, pp. 64-77
-
-
Samavarchi-Tehrani, P.1
-
11
-
-
54049084380
-
A double-negative feedback loop between zeb1-sip1 and the microrna-200 family regulates epithelial-mesenchymal transition
-
Bracken CP, et al. (2008) A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transition. Cancer Res 68(19):7846-7854.
-
(2008)
Cancer Res
, vol.68
, Issue.19
, pp. 7846-7854
-
-
Bracken, C.P.1
-
12
-
-
44649163918
-
A reciprocal repression between zeb1 and members of the mir-200 family promotes emt and invasion in cancer cells
-
Burk U, et al. (2008) A reciprocal repression between ZEB1 and members of the miR-200 family promotes EMT and invasion in cancer cells. EMBO Rep 9(6):582-589.
-
(2008)
EMBO Rep
, vol.9
, Issue.6
, pp. 582-589
-
-
Burk, U.1
-
13
-
-
84055184850
-
Mir-34 and snail form a double-negative feedback loop to regulate epithelial-mesenchymal transitions
-
Siemens H, et al. (2011) miR-34 and SNAIL form a double-negative feedback loop to regulate epithelial-mesenchymal transitions. Cell Cycle 10(24):4256-4271.
-
(2011)
Cell Cycle
, vol.10
, Issue.24
, pp. 4256-4271
-
-
Siemens, H.1
-
14
-
-
34249289041
-
Snail, zeb and bhlh factors in tumour progression: An alliance against the epithelial phenotype?
-
Peinado H, Olmeda D, Cano A (2007) Snail, Zeb and bHLH factors in tumour progression: An alliance against the epithelial phenotype? Nat Rev Cancer 7(6):415-428.
-
(2007)
Nat Rev Cancer
, vol.7
, Issue.6
, pp. 415-428
-
-
Peinado, H.1
Olmeda, D.2
Cano, A.3
-
15
-
-
77956230322
-
The zeb/mir-200 feedback loop- A motor of cellular plasticity in development and cancer?
-
Brabletz S, Brabletz T (2010) The ZEB/miR-200 feedback loop- A motor of cellular plasticity in development and cancer? EMBO Rep 11(9):670-677.
-
(2010)
EMBO Rep
, vol.11
, Issue.9
, pp. 670-677
-
-
Brabletz, S.1
Brabletz, T.2
-
16
-
-
79951813950
-
The zeb1/mir-200 feedback loop controls notch signalling in cancer cells
-
Brabletz S, et al. (2011) The ZEB1/miR-200 feedback loop controls Notch signalling in cancer cells. EMBO J 30(4):770-782.
-
(2011)
EMBO J
, vol.30
, Issue.4
, pp. 770-782
-
-
Brabletz, S.1
-
17
-
-
79956273344
-
A general model for binary cell fate decision gene circuits with degeneracy: Indeterminacy and switch behavior in the absence of cooperativity
-
Andrecut M, Halley JD, Winkler DA, Huang S (2011) A general model for binary cell fate decision gene circuits with degeneracy: indeterminacy and switch behavior in the absence of cooperativity. PLoS ONE 6(5):e19358.
-
(2011)
PLoS ONE
, vol.6
, Issue.5
-
-
Andrecut, M.1
Halley, J.D.2
Winkler, D.A.3
Huang, S.4
-
18
-
-
57149091743
-
Multistable decision switches for flexible control of epigenetic differentiation
-
Guantes R, Poyatos JF (2008) Multistable decision switches for flexible control of epigenetic differentiation. PLOS Comput Biol 4(11):e1000235.
-
(2008)
PLOS Comput Biol
, vol.4
, Issue.11
-
-
Guantes, R.1
Poyatos, J.F.2
-
19
-
-
70349559776
-
Why are cellular switches boolean? General conditions for multistable genetic circuits
-
Macía J, Widder S, Solé R (2009) Why are cellular switches Boolean? General conditions for multistable genetic circuits. J Theor Biol 261(1):126-135.
-
(2009)
J Theor Biol
, vol.261
, Issue.1
, pp. 126-135
-
-
MacÍa, J.1
Widder, S.2
Solé, R.3
-
20
-
-
79957710315
-
Quantifying the waddington landscape and biological paths for development and differentiation
-
Wang J, Zhang K, Xu L, Wang E (2011) Quantifying the Waddington landscape and biological paths for development and differentiation. Proc Natl Acad Sci USA 108(20): 8257-8262.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.20
, pp. 8257-8262
-
-
Wang, J.1
Zhang, K.2
Xu, L.3
Wang, E.4
-
21
-
-
84860451054
-
Mechanisms generating bistability and oscillations in microrna-mediated motifs
-
Zhou P, Cai S, Liu Z, Wang R (2012) Mechanisms generating bistability and oscillations in microRNA-mediated motifs. Phys Rev E Stat Nonlin Soft Matter Phys 85(4 Pt 1): 041916.
-
(2012)
Phys Rev E Stat Nonlin Soft Matter Phys
, vol.85
, Issue.4 PART 1
, pp. 041916
-
-
Zhou, P.1
Cai, S.2
Liu, Z.3
Wang, R.4
-
22
-
-
34547360659
-
Understanding stochastic simulations of the smallest genetic networks
-
Schultz D, Onuchic JN, Wolynes PG (2007) Understanding stochastic simulations of the smallest genetic networks. J Chem Phys 126(24):245102.
-
(2007)
J Chem Phys
, vol.126
, Issue.24
, pp. 245102
-
-
Schultz, D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
23
-
-
0034688174
-
Construction of a genetic toggle switch in escherichia coli
-
Gardner TS, Cantor CR, Collins JJ (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 403(6767):339-342.
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
24
-
-
84883159474
-
Tristability in cancer-associated microrna-tf chimera toggle switch
-
1021/jp403156m
-
Lu M, et al. (2013) Tristability in cancer-associated microRNA-TF chimera toggle switch. J Phys Chem B, 10.1021/jp403156m.
-
(2013)
J Phys Chem B
, vol.10
-
-
Lu, M.1
-
25
-
-
36749100036
-
Molecular level stochastic model for competence cycles in bacillus subtilis
-
Schultz D, Ben Jacob E, Onuchic JN, Wolynes PG (2007) Molecular level stochastic model for competence cycles in Bacillus subtilis. Proc Natl Acad Sci USA 104(45): 17582-17587.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.45
, pp. 17582-17587
-
-
Schultz, D.1
Ben, J.E.2
Onuchic, J.N.3
Wolynes, P.G.4
-
26
-
-
75849116320
-
Deciding fate in adverse times: Sporulation and competence in bacillus subtilis
-
Schultz D, Wolynes PG, Ben Jacob E, Onuchic JN (2009) Deciding fate in adverse times: Sporulation and competence in Bacillus subtilis. Proc Natl Acad Sci USA 106(50): 21027-21034.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.50
, pp. 21027-21034
-
-
Schultz, D.1
Wolynes, P.G.2
Ben, J.E.3
Onuchic, J.N.4
-
27
-
-
84876535178
-
Turning oscillations into opportunities: Lessons from a bacterial decision gate
-
Schultz D, Lu M, Stavropoulos T, Onuchic JN, Ben-Jacob E (2013) Turning oscillations into opportunities: Lessons from a bacterial decision gate. Sci Rep 3:1668.
-
(2013)
Sci Rep
, vol.3
, pp. 1668
-
-
Schultz, D.1
Lu, M.2
Stavropoulos, T.3
Onuchic, J.N.4
Ben-Jacob, E.5
-
28
-
-
84883025658
-
Coupled reversible and irreversible bistable switches underlying tgfβ-induced epithelial to mesenchymal transition
-
Tian XJ, Zhang H, Xing J (2013) Coupled reversible and irreversible bistable switches underlying TGFβ-induced epithelial to mesenchymal transition. Biophys J 105(4): 1079-1089.
-
(2013)
Biophys J
, vol.105
, Issue.4
, pp. 1079-1089
-
-
Tian, X.J.1
Zhang, H.2
Xing, J.3
-
29
-
-
58149382580
-
Microrna regulation of a cancer network: Consequences of the feedback loops involving mir-17-92, e2f, and myc
-
Aguda BD, Kim Y, Piper-Hunter MG, Friedman A, Marsh CB (2008) MicroRNA regulation of a cancer network: Consequences of the feedback loops involving miR-17-92, E2F, and Myc. Proc Natl Acad Sci USA 105(50):19678-19683.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.50
, pp. 19678-19683
-
-
Aguda, B.D.1
Kim, Y.2
Piper-Hunter, M.G.3
Friedman, A.4
Marsh, C.B.5
-
30
-
-
36849064251
-
Target-specific and global effectors in gene regulation by microrna
-
Levine E, Ben Jacob E, Levine H (2007) Target-specific and global effectors in gene regulation by MicroRNA. Biophys J 93(11):L52-L54.
-
(2007)
Biophys J
, vol.93
, Issue.11
-
-
Levine, E.1
Ben, J.E.2
Levine, H.3
-
31
-
-
84887268515
-
Modeling mirna regulation in cancer signaling systems: Mir-34a regulation of the p53/sirt1 signaling module
-
Lai X, Wolkenhauer O, Vera J (2012) Modeling miRNA regulation in cancer signaling systems: miR-34a regulation of the p53/Sirt1 signaling module. Methods Mol Biol 880: 87-108.
-
(2012)
Methods Mol Biol
, vol.880
, pp. 87-108
-
-
Lai, X.1
Wolkenhauer, O.2
Vera, J.3
-
32
-
-
41349120349
-
Computational modeling of post-transcriptional gene regulation by micrornas
-
Khanin R, Vinciotti V (2008) Computational modeling of post-transcriptional gene regulation by microRNAs. J Comput Biol 15(3):305-316.
-
(2008)
J Comput Biol
, vol.15
, Issue.3
, pp. 305-316
-
-
Khanin, R.1
Vinciotti, V.2
-
33
-
-
0001259993
-
On steplength algorithms for a class of continuation methods
-
Denheijer C, Rheinboldt WC (1981) On steplength algorithms for a class of continuation methods. SIAM J Numer Anal 18(5):925-948.
-
(1981)
SIAM J Numer Anal
, vol.18
, Issue.5
, pp. 925-948
-
-
Denheijer, C.1
Rheinboldt, W.C.2
-
34
-
-
44649146789
-
The physiology and pathology of the emt: Meeting on the epithelial-mesenchymal transition
-
Acloque H, Thiery JP, Nieto MA (2008) The physiology and pathology of the EMT: Meeting on the epithelial-mesenchymal transition. EMBO Rep 9(4):322-326.
-
(2008)
EMBO Rep
, vol.9
, Issue.4
, pp. 322-326
-
-
Acloque, H.1
Thiery, J.P.2
Nieto, M.A.3
-
35
-
-
70449527638
-
Hypoxia, snail and incomplete epithelial- mesenchymal transition in breast cancer
-
Lundgren K, Nordenskjöld B, Landberg G (2009) Hypoxia, Snail and incomplete epithelial- mesenchymal transition in breast cancer. Br J Cancer 101(10):1769-1781.
-
(2009)
Br J Cancer
, vol.101
, Issue.10
, pp. 1769-1781
-
-
Lundgren, K.1
Nordenskjöld, B.2
Landberg, G.3
-
36
-
-
37249021472
-
Snail1a and snail1b cooperate in the anterior migration of the axial mesendoderm in the zebrafish embryo
-
Blanco MJ, et al. (2007) Snail1a and Snail1b cooperate in the anterior migration of the axial mesendoderm in the zebrafish embryo. Development 134(22):4073-4081.
-
(2007)
Development
, vol.134
, Issue.22
, pp. 4073-4081
-
-
Blanco, M.J.1
-
37
-
-
79955954699
-
An autocrine tgf-beta/zeb/mir-200 signaling network regulates establishment and maintenance of epithelial-mesenchymal transition
-
Gregory PA, et al. (2011) An autocrine TGF-beta/ZEB/miR-200 signaling network regulates establishment and maintenance of epithelial-mesenchymal transition. Mol Biol Cell 22(10):1686-1698.
-
(2011)
Mol Biol Cell
, vol.22
, Issue.10
, pp. 1686-1698
-
-
Gregory, P.A.1
-
38
-
-
84855729906
-
A p53/mirna-34 axis regulates snail1-dependent cancer cell epithelial-mesenchymal transition
-
Kim NH, et al. (2011) A p53/miRNA-34 axis regulates Snail1-dependent cancer cell epithelial-mesenchymal transition. J Cell Biol 195(3):417-433.
-
(2011)
J Cell Biol
, vol.195
, Issue.3
, pp. 417-433
-
-
Kim, N.H.1
-
39
-
-
84879564968
-
Zeb1 regulates e-cadherin and epcam (epithelial cell adhesion molecule) expression to control cell behavior in early zebrafish development
-
Vannier C, Mock K, Brabletz T, Driever W(2013) Zeb1 regulates E-cadherin and Epcam (epithelial cell adhesion molecule) expression to control cell behavior in early zebrafish development. J Biol Chem 288(26):18643-18659.
-
(2013)
J Biol Chem
, vol.288
, Issue.26
, pp. 18643-18659
-
-
Vannier, C.1
Mock, K.2
Brabletz, T.3
Driever, W.4
-
40
-
-
84873050284
-
Regulatory networks defining emt during cancer initiation and progression
-
De Craene B, Berx G (2013) Regulatory networks defining EMT during cancer initiation and progression. Nat Rev Cancer 13(2):97-110.
-
(2013)
Nat Rev Cancer
, vol.13
, Issue.2
, pp. 97-110
-
-
De Craene, B.1
Berx, G.2
-
41
-
-
43149112757
-
Involvement of notch signaling in wound healing
-
Chigurupati S, et al. (2007) Involvement of notch signaling in wound healing. PLoS ONE 2(11):e1167.
-
(2007)
PLoS ONE
, vol.2
, Issue.11
-
-
Chigurupati, S.1
-
42
-
-
84866341656
-
A comparison of epithelial-to-mesenchymal transition and re-epithelialization
-
Leopold PL, Vincent J, Wang H (2012) A comparison of epithelial-to- mesenchymal transition and re-epithelialization. Semin Cancer Biol 22(5-6):471-483.
-
(2012)
Semin Cancer Biol
, vol.22
, Issue.5-6
, pp. 471-483
-
-
Leopold, P.L.1
Vincent, J.2
Wang, H.3
|