Micromonospora is a normal occupant of actinorhizal nodules

Journal of Biosciences

Volumn 38, Issue 4, 2013, Pages 685-693

  Carro, Lorena ^a   Pujic, Petar ^a   Trujillo, Martha E ^b   Normand, Philippe ^a  

^a University of Lyon   (France)

^b UNIVERSITY OF SALAMANCA   (Spain)

Author keywords

Alnus; Elaeagnus; Frankia; Hippophae; Micromonospora; Myrica

Indexed keywords

ACTINORHIZA; GROWTH RATE; INHIBITION; MICROBIAL ACTIVITY; NITROGEN FIXATION; NODULATION; ROOT;

ACTINORHIZAL PLANT; ALNUS GLUTINOSA; ALNUS VIRIDIS; ARTICLE; CORIARIA MYRTIFOLIA; ELAEAGNUS EBBINGEI; FUNGAL STRAIN; FUNGUS ISOLATION; HIPPOPHAE RHAMNOIDES; MICROMONOSPORA; MICROMONOSPORA CORIARIAE; MICROMONOSPORA LUPINI; MICROMONOSPORA SAELICESENSIS; MORELLA PENSYLVANICA; MYRIA GALE; NODULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT;

ALNUS; ANTIBIOSIS; CUCURBITACEAE; CULTURE MEDIA; DNA, BACTERIAL; ELAEAGNACEAE; FAGACEAE; FRANKIA; HIPPOPHAE; MICROMONOSPORA; MYRICA; NITROGEN FIXATION; PHYLOGENY; ROOT NODULES, PLANT; ROSALES; SYMBIOSIS;

EID: 84887227727     PISSN: 02505991     EISSN: 09737138     Source Type: Journal    
DOI: 10.1007/s12038-013-9359-y     Document Type: Article

References (59)

1. Atlas RM 1993 Handbook of microbiological media (Boca Raton, FL: CRC Press)
2. Baker D and Torrey J 1979 The isolation and cultivation of actinomycetous root nodule endophytes; in Symbiotic nitrogen fixation in the management of temperate forests (eds) JC Gordon, CT Wheeler, DA Perry and OR Corvallis (Oregon State University, Forest Research Laboratory) pp 38-56
3. Benson DR and Silvester WB 1993 Biology of Frankia strains, actinomycete symbionts of actinorhizal plants. Microbiol. Rev. 57 293-319 (Pubitemid 23170094)
4. Berdy J 2005 Bioactive microbial metabolites. J. Antibiot. 58 1-26
5. Callaham D, Del Tredici P and Torrey J 1978 Isolation and cultivation in vitro of the actinomycete causing root nodulation in Comptonia. Science 199 899-902 (Pubitemid 8310985)
6. Carro L, Sproer C, Alonso P and Trujillo ME 2012a Diversity of Micromonospora strains isolated from nitrogen fixing nodules and rhizosphere of Pisum sativum analyzed by multilocus sequence analysis. Syst. Appl. Microbiol. 35 73-80
7. Carro L, Pukall R, Spröer C, Kroppenstedt RM and Trujillo ME 2012b Micromonospora cremea sp. Nov. and Micromonospora zamorensis sp. Nov., isolated from the rhizosphere of Pisum sativum. Int. J. Syst. Evol. Microbiol. 62 2971-2977
8. Carro L, Pukall R, Spröer C, Kroppenstedt RM and Trujillo ME 2013 Micromonospora halotolerans sp. Nov., isolated from the rhizosphere of a Pisum sativum plant. Antonie Van Leeuwenhoek 103 1245-1254
9. Ceremonie H, Debelle F and Fernandez MP 1999 Structural and functional comparison of Frankia root hair deforming factor and rhizobia Nod factor. Can. J. Bot. 77 1293-1301 (Pubitemid 30144232)
10. Coombs JT and Franco CM 2003 Isolation and identification of actinobacteria from surface-sterilized wheat roots. Appl. Environ. Microbiol. 69 5603-5608 (Pubitemid 37150786)
11. Felsenstein J 1985 Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 783-791
12. Fernandez M, Meugnier H, Grimont P and Bardin R 1989 Deoxyribonucleic acid relatedness among members of the genus Frankia. Int. J. Syst. Bacteriol. 39 424-429 (Pubitemid 19250507)
13. Furumai T, Takagi K, Igarashi Y, Saito N and Oki T 2000 Arisostatins A and B, new members of tetrocarcin class of antibiotics from Micromonospora sp. TP-A0316. I. Taxonomy, fermentation, isolation and biological properties. J. Antibiot. 53 227-232 (Pubitemid 30199073)
14. Furumai T, Igarashi Y, Higuchi H, Saito N and Oki T 2002 Kosinostatin, a quinocycline antibiotic with antitumor activity from Micromonospora sp. TP-A0468. J. Antibiot. 55 128-133 (Pubitemid 34285450)
15. Garcia LC, Martínez-Molina E abd Trujillo ME 2010 Micromonospora pisi sp. Nov., isolated from root nodules of Pisum sativum. Int. J. Syst. Evol. Microbiol. 60 331-337
16. Gauthier D, Diem H and Dommergues Y 1981 In vitro nitrogen fixation by two actinomycete strains isolated from Casuarina nodules. Appl. Environ. Microbiol. 41 306-308
17. Genilloud O 2012 Genus I. Micromonospora; in Bergey's manual of systematic bacteriology: The Actinobacteria 2nd edition (eds) M Goodfellow, P Kämpfer, H-J Busse, ME Trujillo, KI Suzuki, W Ludwig and WB Whitman (Athens, GA: Bergey's Manual Trust, Springer) pp 1039-1057
18. Gherbi H, Markmann K, Svistoonoff S, Estevan J, Autran D, Giczey G, Auguy F, Peret B, et al. 2008 SymRK defines a common genetic basis for plant root endosymbioses with arbuscular mycorrhiza fungi, rhizobia, and Frankia bacteria. Proc. Natl. Acad. Sci. USA 105 4928-4932 (Pubitemid 351753848)
19. Hall TA 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 95-98
20. Hammad Y, Nalin R, Marechal J, Fiasson K, Pepin R, Berry AM, Normand P and Domenach A-M 2003 A possible role for phenylacetic acid (PAA) in Alnus glutinosa nodulation by Frankia. Plant Soil 254 193-205 (Pubitemid 37084044)
21. Hocher V, Alloisio N, Auguy F, Fournier P, Doumas P, Pujic P Gherbi H, Queiroux C, et al. 2011 Transcriptomics of actinorhizal symbioses reveals homologs of the whole common symbiotic signaling cascade. Plant Physiol. 156 1-12
22. Igarashi Y, Higuchi H, Oki T and Furumai T 2002 NMR analysis of quinocycline antibiotics: structure determination of kosinostatin, an antitumor substance from Micromonospora sp. TP-A0468. J. Antibiot. 55 134-140 (Pubitemid 34285451)
23. Igarashi Y, Miyanaga S, Onaka H, Takeshita M and Furumai T 2005 Revision of the structure assigned to the antibiotic BU-4664L from Micromonopora. J. Antibiot. 58 350-352 (Pubitemid 40874454)
24. Igarashi Y, Takagi K, Kan Y, Fujii K, Harada K, Furumai T and Oki T 2000 Arisostatins A and B, new members of tetrocarcin class of antibiotics from Micromonospora sp. TP-A0316. II. Structure determination. J. Antibiot. 53 233-240 (Pubitemid 30199074)
25. Igarashi Y, Ogura H, Furihata K, Oku N, Indananda C and Thamchaipenet A 2011a Maklamicin, an antibacterial polyketide from an endophytic Micromonospora sp. J. Nat. Prod. 74 670-674
26. Igarashi Y, Yanase S, Sugimoto K, Enomoto M, Miyanaga S, Trujillo ME Saiki I and Kuwahara S 2011b Lupinacidin C, an inhibitor of tumor cell invasion from Micromonospora lupini. J. Nat. Prod. 74 862-865
27. Igarashi Y, Trujillo ME, Martinez-Molina E, Yanase S, Miyanaga S, Obata T, Sakurai H, Saiki I, Fujita T and Furumai T 2007 Antitumor anthraquinones from an endophytic actinomycete Micromonospora lupini sp. Nov. Bioorg. Med. Chem. Lett. 17 3702-3705 (Pubitemid 46898807)
28. Kim TU, Cho SH, Han JH, Shin YM, Lee HB and Kim SB 2012a Diversity and physiological properties of root endophytic actinobacteria in native herbaceous plants of Korea. J. Microbiol. 50 50-57
29. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S and Chun J 2012b Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62 716-721
30. Kimura M 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 111-120 (Pubitemid 11166431)
31. Kirby BM and Meyers PR 2010 Micromonospora tulbaghiae sp. Nov., isolated from the leaves of wild garlic, Tulbaghia violacea. Int. J. Syst. Evol. Microbiol. 60 1328-1333
32. Li L, Tang YL, Wei B, Xie QY, Deng Z and Hong K 2012 Micromonospora sonneratiae sp. Nov., isolated from a root of Sonneratia apetala. Int. J. Syst. Evol. Microbiol. 63 2383
33. Mirza M, Janse J, Hahn D and Akkermans A 1991 Identification of atypical Frankia strains by fatty acid analysis. FEMS Microbiol. Lett. 83 91-98
34. Mort A, Normand P and Lalonde M 1983 2-O-methyl-D-mannose, a key sugar in the taxonomy of Frankia. Can. J. Microbiol. 29 993-1002
35. Murry M, Fontaine M and Torrey J 1984 Growth kinetics and nitrogenase induction in Frankia sp. HFPArI3 grown in batch culture. Plant Soil 78 61-78
36. Normand P and Lalonde M 1982 Evaluation of Frankia strains isolated from provenances of two Alnus species. Can. J. Microbiol. 28 1133-1142
37. Normand P and Benson DR 2012 Genus I Frankia Brunchorst 1886, 174AL; in Bergey's manual of systematic bacteriology, The actinobacteria (eds) M Goodfellow, P Kämpfer, H-J Busse, ME Trujillo, W Ludwig, and Suzuki KI (New York: Bergey's Manual Trust, Springer) pp 512-520
38. Normand P, Orso S, Cournoyer B, Jeannin P, Chapelon C, Dawson J, Evtushenko L, Misra AK 1996 Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae. Int. J. Syst. Bacteriol. 46 1-9 (Pubitemid 26030464)
39. Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E, Bassi CA, Berry AM, et al. 2007 Genome characteristics of facultatively symbiotic Frankia sp. Strains reflect host range and host plant biogeography. Genome Res. 17 7-15 (Pubitemid 46041660)
40. Orskov J 1923 Investigations into the morphology of the ray fungi (Copenhagen: Denmark: Levin and Munksgaard)
41. Persson T, Benson DR, Normand P, Vanden Heuvel B, Pujic P, Chertkov O, Teshima H, Bruce DC, et al. 2011 Genome sequence of "Candidatus Frankia datiscae" Dg1, the uncultured microsymbiont from nitrogen-fixing root nodules of the dicot Datisca glomerata. J. Bacteriol. 193 7017-7018
42. Pommer E 1959 Uber die Isolierung des Endophyten aus den Wurzelknöllchen Alnus glutinosa Gaertn. und uber erfolgreiche Re-Infektionsversuche. Ber. Deutsch. Botan. Gesell. 72 138-150
43. Pujic P, Fournier P, Alloisio N, Hay AE, Marechal J, Anchisi S and Normand P 2012 Lectin genes in the Frankia alni genome. Arch. Microbiol. 194 47-56
44. Rivas R, Sanchez M, Trujillo ME, Zurdo-Pineiro JL, Mateos PF, Martinez-Molina E and Velazquez E 2003 Xylanimonas cellulosilytica gen. nov., sp. Nov., a xylanolytic bacterium isolated from a decayed tree (Ulmus nigra). Int. J. Syst. Evol. Microbiol. 53 99-103 (Pubitemid 36285227)
45. Saitou N and Nei M 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 406-425
46. Simonet P, Navarro E, Rouvier C, Reddell P, Zimpfer J, Dawson J, Dommergues Y, Bardin R, Combarro P, Hamelin J, Domenach A-M, Gourbière F, Prin Y and Normand P 1999 Co-evolution between Frankia populations and host plants in the family Casuarinaceae and consequent patterns of global dispersal. Environ. Microbiol. 1 525-535
47. Solans M 2007 Discaria trinervis - Frankia symbiosis promotion by saprophytic actinomycetes. J. Basic Microbiol. 47 243-250 (Pubitemid 46954396)
48. Stevens G and Berry A 1988 Cytokinin secretion by Frankia sp. HFPArI3 in defined medium. Plant Physiol. 87 15-16
49. Tamura K, Dudley J, Nei M and Kumar S 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 1596-1599 (Pubitemid 47236692)
50. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F and Higgins DG 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 4876-4882 (Pubitemid 28022245)
51. Trujillo M, Kroppenstedt R, Schumann P, Carro L and Martínez- Molina E 2006 Micromonospora coriariae sp. Nov., isolated from root nodules of Coriaria myrtifolia. Int. J. Syst. Evol. Microbiol. 56 2381-2385 (Pubitemid 44566811)
52. Trujillo ME, Kroppenstedt RM, Fernandez-Molinero C, Schumann P and Martinez-Molina E 2007 Micromonospora lupini sp. Nov. and Micromonospora saelicesensis sp. Nov., isolated from root nodules of Lupinus angustifolius. Int. J. Syst. Evol. Microbiol. 57 2799-2804
53. Trujillo ME, Alonso-Vega P, Rodriguez R, Carro L, Cerda E, Alonso P and Martinez-Molina E 2010 The genus Micromonospora is widespread in legume root nodules: the example of Lupinus angustifolius. Isme J. 4 1265-12581
54. Valdes M, Perez NO, Estrada-de Los Santos P, Caballero-Mellado J, Pena-Cabriales JJ, Normand P and Hirsch AM 2005 Non-Frankia actinomycetes isolated from surface-sterilized roots of Casuarina equisetifolia fix nitrogen. Appl. Environ. Microbiol. 71 460-466 (Pubitemid 40116302)
55. Van Ghelue M, Lovaas E, Ringo E and Solheim B 1997 Early interactions between Alnus glutinosa and Frankia strain ArI3. Production and specificity of root hair deformation factor(s). Physiol. Plant 99 579-587 (Pubitemid 27195148)
56. Vincent JM 1970 The cultivation, isolation and maintenance of rhizobia; in A manual for the practical study of root nodule bacteria (ed) JM Vincent (Oxford: Blackwell Scientific) pp 1-13
57. Wang C, Xu XX, Qu Z, Wang HL, Lin HP, Xie QY, Ruan JS and Hong K 2011 Micromonospora rhizosphaerae sp. Nov., isolated from mangrove rhizosphere soil. Int. J. Syst. Evol. Microbiol. 61 320-324
58. Zhang Z, Lopez MF and Torrey JG 1984 A comparison of cultural characteristics and infectivity of Frankia isolates from root nodules of Casuarina species. Plant Soil 78 79-90
59. Zhao K, Penttinen P, Guan T, Xiao J, Chen Q, Xu J, Lindstrom K, Zhang L, Zhang X and Strobel GA 2011 The diversity and anti-microbial activity of endophytic actinomycetes isolated from medicinal plants in Panxi plateau, China. Curr. Microbiol. 62 182-190