Micromonospora cremea sp. nov. and Micromonospora zamorensis sp. nov., isolated from the rhizosphere of Pisum sativum

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 12, 2012, Pages 2971-2977

  Carro, Lorena ^a   Pukall, Rüdiger ^b   Sproër, Cathrin ^b   Kroppenstedt, Reiner M ^b   Trujillo, Martha E ^a  

^a UNIVERSITY OF SALAMANCA   (Spain)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA 16S;

ARTICLE; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; GRAM POSITIVE BACTERIUM; MICROMONOSPORA CREMEA; MICROMONOSPORA ZAMORENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PEA; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RHIZOSPHERE; RNA SEQUENCE;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; FATTY ACIDS; MICROMONOSPORA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PEAS; PEPTIDOGLYCAN; PHYLOGENY; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPAIN; VITAMIN K 2;

ACTINOBACTERIA; MICROMONOSPORA; PISUM SATIVUM;

EID: 84870893015     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.038695-0     Document Type: Article

References (43)

1. Bates, R. G. & Bower, V. E. (1956). Alkaline solutions for pH control. Anal Chem 28, 1322-1324.
2. Carro, L., Sproër, C., Alonso, P. & Trujillo, M. E. (2012). Diversity of Micromonospora strains isolated from nitrogen fixing nodules and rhizosphere of Pisum sativum analyzed by multilocus sequence analysis. Syst Appl Microbiol 35, 73-80.
3. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. de Menezes, A. B., Lockhart, R. J., Cox, M. J., Allison, H. E. & McCarthy, A. J. (2008). Cellulose degradation by micromonosporas recovered from freshwater lakes and classification of these actino-mycetes by DNA gyrase B gene sequencing. Appl Environ Microbiol 74, 7080-7084.
6. Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual of Methods for General Bacteriology, pp. 21-33. Edited by P. Gerdhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
7. Euzéby, J. P. (2011). List of prokaryotic names with standing in nomenclature. http://www.bacterio.cict.fr/
8. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. Garciá, L. C., Martínez-Molina, E. & Trujillo, M. E. (2010). Micromonospora pisi sp. nov., isolated from root nodules of Pisum sativum. Int J Syst Evol Microbiol 60, 331-337.
11. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
12. Hirsch, P., Mevs, U., Kroppenstedt, R. M., Schumann, P. & Stackebrandt, E. (2004). Cryptoendolithic actinomycetes from Antarctic sandstone rock samples: Micromonospora endolithica sp. nov. and two isolates related to Micromonospora coerulea Jensen 1932. Syst Appl Microbiol 27, 166-174.
13. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
14. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogeneous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-146.
15. Kasai, H., Tamura, T. & Harayama, S. (2000). Intrageneric relation-ships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness. Int J Syst Evol Microbiol 50, 127-134.
16. Kim, O. -S., Cho, Y. -J., Lee, K., Yoon, S. -H., Kim, M., Na, H., Park, S. -C., Jeon, Y. S., Lee, J. -H., Yi, H., Won, S. & Chun, J. (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
17. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
18. Kirby, B. M. & Meyers, P. R. (2010). Micromonospora tulbaghiae sp. nov., isolated from the leaves of wild garlic, Tulbaghia violacea. Int J Syst Evol Microbiol 60, 1328-1333.
19. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composi-tion. Biochem Syst Ecol 5, 249-260.
20. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
21. Maldonado, L. A., Stach, J. E., Ward, A. C., Bull, A. T. & Goodfellow, M. (2008). Characterisation of micromonosporae from aquatic environ-ments using molecular taxonomic methods. Antonie van Leeuwenhoek 94, 289-298.
22. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
23. McIlvaine, T. C. (1921). A buffer solution for colorimetric comparison. J Biol Chem 49, 183-186.
24. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, K. & Parlett, J. H. (1984). An integrated procedure for extracting bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
25. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behavior of the isomers of a, e-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
26. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
27. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 1-6.
28. Schröder, K. -H., Naumann, L., Kroppenstedt, R. M. & Reischl, U. (1997). Mycobacterium hassiacum sp. nov., a new rapidly growing thermophilic mycobacterium. Int J Syst Bacteriol 47, 86-91.
29. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
30. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
31. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24, 1596-1599.
32. Tanasupawat, S., Jongrungruangchok, S. & Kudo, T. (2010). Micromonospora marina sp. nov., isolated from sea sand. Int J Syst Evol Microbiol 60, 648-652.
33. Thawai, C., Tanasupawat, S., Itoh, T., Suwanborirux, K. & Kudo, T. (2005). Micromonospora siamensis sp. nov., isolated from Thai peat swamp forest. J Gen Appl Microbiol 51, 229-234.
34. Thawai, C., Tanasupawat, S., Suwanborirux, K., Itoh, T. & Kudo, T. (2007). Micromonospora narathiwatensis sp. nov., from Thai peat swamp forest soils. J Gen Appl Microbiol 53, 287-293.
35. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
36. Trujillo, M. E., Fernández-Molinero, C., Velázquez, E., Kroppenstedt, R. M., Schumann, P., Mateos, P. F. & Martínez-Molina, E. (2005). Micromonospora mirobrigensis sp. nov. Int J Syst Evol Microbiol 55, 877-880.
37. Trujillo, M. E., Kroppenstedt, R. M., Schumann, P., Carro, L. & Martínez-Molina, E. (2006). Micromonospora coriariae sp. nov., isolated from root nodules of Coriaria myrtifolia. Int J Syst Evol Microbiol 56, 2381-2385.
38. Trujillo, M. E., Kroppenstedt, R. M., Fernández-Molinero, C., Schumann, P. & Martínez-Molina, E. (2007). Micromonospora lupine sp. nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius. Int J Syst Evol Microbiol 57, 2799-2804.
39. Trujillo, M. E., Alonso-Vega, P., Rodríguez, R., Carro, L., Cerda, E., Alonso, P. & Martínez-Molina, E. (2010). The genus Micromonospora is widespread in legume root nodules: the example of Lupinus angustifolius. ISME J 4, 1265-1281.
40. Vincent, J. M. (1970). The cultivation, isolation and maintenance of rhizobia. In A Manual for the Practical Study of Root Nodule Bacteria, pp. 1-13. Edited by J. M. Vincent. Oxford: Blackwell Scientific.
41. Wang, C., Xu, X. X., Qu, Z., Wang, H. L., Lin, H. P., Xie, Q. Y., Ruan, J. S. & Hong, K. (2011). Micromonospora rhizosphaerae sp. nov., isolated from mangrove rhizosphere soil. Int J Syst Evol Microbiol 61, 320-324.
42. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
43. Zhang, L., Xi, L., Ruan, J. & Huang, Y. (2012). Micromonospora yangpuensis sp. nov., isolated from a sponge. Int J Syst Evol Microbiol 62, 272-278.