The minichromosome maintenance replicative helicase

Cold Spring Harbor Perspectives in Biology

Volumn 5, Issue 11, 2013, Pages

  Bell, Stephen D ^a   Botchan, Michael R ^b  

^a INDIANA UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL PROTEIN; DNA HELICASE; MINICHROMOSOME MAINTENANCE PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN;

ANIMAL; ARCHAEON; CELL FREE SYSTEM; CHEMICAL STRUCTURE; DROSOPHILA MELANOGASTER; METABOLISM; METHANOBACTERIACEAE; PLASMID; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; REVIEW; SACCHAROMYCES CEREVISIAE; XENOPUS;

ANIMALS; ARCHAEA; ARCHAEAL PROTEINS; CELL-FREE SYSTEM; DNA HELICASES; DROSOPHILA MELANOGASTER; METHANOBACTERIACEAE; MINICHROMOSOME MAINTENANCE PROTEINS; MODELS, MOLECULAR; PLASMIDS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; XENOPUS;

EID: 84887175099     PISSN: None     EISSN: 19430264     Source Type: Journal    
DOI: 10.1101/cshperspect.a012807     Document Type: Article

References (54)

1. Bae B, Chen Y-H, Costa A, Onesti S, Brunzelle JS, Lin Y, Cann IKO, Nair SK. 2009. Insights into the architecture of the replicative helicase from the structure of an Archaeal MCM homolog. Structure 17: 211-222.
2. Barry ER, McGeoch AT, Kelman Z, Bell SD. 2007. Archaeal MCM has separable processivity, substrate choice and helicase domains. Nucleic Acids Res 35: 988-998.
3. Barry ER, Lovett JE, Costa A, Lea SM, Bell SD. 2009. Intersubunit allosteric communication mediated by a conserved loop in the MCM helicase. Proc Natl Acad Sci 106: 1051-1056.
4. Beattie TR, Bell SD. 2011. Molecular machines in Archaeal DNA replication. Curr Opin Chem Biol 15: 614-619.
5. Bell SP, Kaguni JM. 2013. Helicase loading at chromosomal origins of replication. Cold Spring Harb Perspect Biol doi: 10. 1101/cshperspect. a010124.
6. Bochman ML, Schwacha A. 2008. The Mcm2-7 complex has in vitro helicase activity. Mol Cell 31: 287-293.
7. Bochman ML, Schwacha A. 2009. The Mcm complex: Unwinding the mechanism of a replicative helicase. Microbiol Mol Biol Rev 73: 652-683.
8. Brewster AS, Wang G, Yu X, Greenleaf WB, Maria Carazo J, Tjajadia M, Klein MG, Chen XS. 2008. Crystal structure of a near-full-length archaeal MCM: Functional insights for an AAA plus hexameric helicase. Proc Natl Acad Sci 105: 20191-20196.
9. Chen YJ, Yu XO, Kasiviswanathan R, Shin JH, Kelman Z, Egelman EH. 2005. Structural polymorphism of Methanothermobacter thermautotrophicus MCM. J Mol Biol 346: 389-394.
10. Chong JPJ, Hayashi MK, Simon MN, Xu RM, Stillman B. 2000. A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase. Proc Natl Acad Sci 97: 1530-1535.
11. Costa A, Onesti S. 2009. Structural biology of MCM helicases. Crit Rev Biochem Mol Biol 44: 326-342.
12. Costa A, Ilves I, Tamberg N, Petojevic T, Nogales E, Botchan MR, Berger JM. 2011. The structural basis for MCM2-7 helicase activation by GINS and Cdc45. Nat Struct Mol Biol 18: 471-477.
13. Crampton DJ, Mukherjee S, Richardson CC. 2006. DNAinduced switch from independent to sequential dTTP hydrolysis in the bacteriophage T7 DNA helicase. Mol Cell 21: 165-174.
14. Crevel G, Ivetic A, Ohno K, Yamaguchi M, Cotterill S. 2001. Nearest neighbour analysis of MCM protein complexes in Drosophila melanogaster. Nucleic Acids Res 29: 4834-4842.
15. Davey MJ, Indiani C, O'Donnell M. 2003. Reconstitution of theMcm2-7p heterohexamer, subunit arrangement, and ATP site architecture. J Biol Chem 278: 4491-4499.
16. Enemark EJ, Joshua-Tor L. 2006. Mechanism of DNA translocation in a replicative hexameric helicase. Nature 442: 270-275.
17. Enemark EJ, Joshua-Tor L. 2008. On helicases and other motor proteins. Curr Opin Struct Biol 18: 243-257.
18. Erzberger JP, Berger JM. 2006. Evolutionary relationships and structural mechanisms of AAA plus proteins. Annu Rev Biophys Biomol Struct 35: 93-114.
19. Fletcher RJ, Bishop BE, Leon RP, Sclafani RA, Ogata CM, Chen XJS. 2003. The structure and function of MCM from archaeal M. thermoautotrophicum. Nat Struct Biol 10: 160-167.
20. Fletcher RJ, Shen JP, Gomez-Llorente Y, San Martin C, Carazo JM, Chen XJS. 2005. Double hexamer disruption and biochemical activities of Methanobacterium thermoautotrophicum MCM. J Biol Chem 280: 42405-42410.
21. Fu YV, Yardimci H, Long DT, Ho TV, Guainazzi A, Bermudez VP, Hurwitz J, van Oijen A, Schaerer OD, Walter JC. 2011. Selective bypass of a lagging strand roadblock by the eukaryotic replicative DNA helicase. Cell 146: 930-940.
22. Gai DH, Zhao R, Li DW, Finkielstein CV, Chen XS. 2004. Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen. Cell 119: 47-60.
23. Graham BW, Schauer GD, Leuba SH, Trakselis MA. 2011. Steric exclusion and wrapping of the excluded DNA strand occurs along discrete external binding paths during MCM helicase unwinding. Nucleic Acids Res 39: 6585-6595.
24. Ilves I, Petojevic T, Pesavento JJ, Botchan MR. 2010. Activation of the MCM2-7 helicase by association with Cdc45 and GINS proteins. Mol Cell 37: 247-258.
25. Ishimi Y. 1997. A DNA helicase activity is associated with an MCM4,-6, and-7 protein complex. J Biol Chem 272: 24508-24513.
26. Ishino S, Fujino S, Tomita H, Ogino H, Takao K, Daiyasu H, Kanai T, Atomi H, Ishino Y. 2011. Biochemical and genetical analyses of the three mcm genes from the hyperthermophilic archaeon, Thermococcus kodakarensis. Genes Cells 16: 1176-1189.
27. Iyer LM, Leipe DD, Koonin EV, Aravind L. 2004. Evolutionary history and higher order classification of AAA plus ATPases. J Struct Biol 146: 11-31.
28. Jenkinson ER, Chong JPJ. 2006. Minichromosome maintenance helicase activity is controlled by N-and C-terminal motifs and requires the ATPase domain helix-2 insert. Proc Natl Acad Sci 103: 7613-7618.
29. Kasiviswanathan R, Shin JH, Melamud E, Kelman Z. 2004. Biochemical characterization of the Methanothermobacter thermautotrophicus minichromosome maintenance (MCM) helicase N-terminal domains. J Biol Chem 279: 28358-28366.
30. Kearsey SE, Labib K. 1998. MCM proteins: Evolution, properties, and role in DNA replication. Biochim Biophys Acta 1398: 113-136.
31. Labib K, Gambus A. 2007. A key role for the GINS complex at DNA replication forks. Trends Cell Biol 17: 271-278.
32. Labib K, Tercero JA, Diffley JFX. 2000. Uninterrupted MCM2-7 function required for DNA replication fork progression. Science 288: 1643-1647.
33. Li Z, Santangelo TJ, Cubonova Lu, Reeve JN, Kelman Z. 2010. Affinity purification of an Archaeal DNA replication protein network. MBio 1: e00221-10.
34. Li Z, Pan M, Santangelo TJ, Chemnitz W, Yuan W, Edwards JL, Hurwitz J, Reeve JN, Kelman Z. 2011. A novel DNA nuclease is stimulated by association with the GINS complex. Nucleic Acids Res 39: 6114-6123.
35. Liew LP, Bell SD. 2011. The interplay of DNA binding, ATP hydrolysis and helicase activities of the archaeal MCM helicase. Biochem J 436: 409-414.
36. Makarova KS, Wolf YI, Mekhedov SL, Mirkin BG, Koonin EV. 2005. Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell. Nucleic Acids Res 33: 4626-4638.
37. Marinsek N, Barry ER, Makarova KS, Dionne I, Koonin EV, Bell SD. 2006. GINS, a central nexus in the archaeal DNA replication fork. EMBO Rep 7: 539-545.
38. Martin A, Baker TA, Sauer RT. 2005. Rebuilt AAA plus motors reveal operating principles forATP-fuelled machines. Nature 437: 1115-1120.
39. McGeoch AT, Trakselis MA, Laskey RA, Bell SD. 2005. Organization of the Archaeal MCM complex on DNA and implications for the helicase mechanism. Nat Struct Mol Biol 12: 756-762.
40. Moreau MJ, McGeoch AT, Lowe AR, Itzhaki LS, Bell SD. 2007. ATPase site architecture and helicase mechanism of an Archaeal MCM. Mol Cell 28: 304-314.
41. Moyer SE, Lewis PW, Botchan MR. 2006. Isolation of the Cdc45/Mcm2-7/GINS (CMG) complex, a candidate for the eukaryotic DNA replication fork helicase. Proc Natl Acad Sci 103: 10236-10241.
42. Pape T, Meka H, Chen SX, Vicentini G, van Heel M, Onesti S. 2003. Hexameric ring structure of the full-length archaeal MCM protein complex. EMBO Rep 4: 1079-1083.
43. Poplawski A, Grabowski B, Long SF, Kelman Z. 2001. The zinc finger domain of the archaeal minichromosome maintenance protein is required for helicase activity. J Biol Chem 276: 49371-49377.
44. Remus D, Beuron F, Tolun G, Griffith JD, Morris EP, Diffley JFX. 2009. Concerted loading ofMcm2-7 double hexamers around DNA during DNA replication origin licensing. Cell 139: 719-730.
45. 0-tail. J Biol Chem 282: 34229-34234.
46. Sakakibara N, Kasiviswanathan R, Melamud E, Han M, Schwarz FP, Kelman Z. 2008. Coupling of DNA binding and helicase activity is mediated by a conserved loop in the MCM protein. Nucleic Acids Res 36: 1309-1320.
47. Sakakibara N, Kelman LM, Kelman Z. 2009. Unwinding the structure and function of the archaeal MCM helicase. Mol Microbiol 72: 286-296.
48. Sanchez-Pulido L, Ponting CP. 2011. Cdc45: The missing RecJ ortholog in eukaryotes? Bioinformatics 27: 1885-1888.
49. Schwacha A, Bell SP. 2001. Interactions between two catalytically distinct MCM subgroups are essential for coordinated ATP hydrolysis and DNA replication. Mol Cell 8: 1093-1104.
50. Shin J-H, Heo G-Y, Kelman Z. 2009. The Methanothermobacter thermautotrophicus MCM helicase is active as a hexameric ring. J Biol Chem 284: 540-546.
51. Siddiqui K, On KF, Diffley JFX. 2013. Regulating DNA replication in eukarya. Cold Spring Harb Perspect Biol doi: 10. 1101/cshperspect. a012930.
52. Tanaka S, Araki H. 2013. Helicase activation and establishment of replication forks at chromosomal origins of replication. Cold Spring Harb Perspect Biol doi: 10. 1101/ cshperspect. a010371.
53. Yoshimochi T, Fujikane R, Kawanami M, Matsunaga F, Ishino Y. 2008. The GINS complex from Pyrococcus furiosus stimulates the MCM helicase activity. J Biol Chem 283: 1601-1609.
54. Yu X, VanLoock MS, Poplawski A, Kelman Z, Xiang T, Tye BK, Egelman EH. 2002. The Methanobacterium thermoautotrophicum MCM protein can form heptameric rings. EMBO Rep 3: 792-797.