Preliminary identifcation of differentially expressed tear proteins in keratoconus

Molecular Vision

Volumn 19, Issue , 2013, Pages 2124-2134

  Balasubramanian, Sivaraman A ^a,b,c   Wasinger, Valerie C ^a   Pye, David C ^a   Willcox, Mark D P ^a  

^a UNIVERSITY OF NEW SOUTH WALES   (Australia)

^b DEAKIN UNIVERSITY   (Australia)

^c UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CATHEPSIN B; CYSTATIN S; CYSTATIN SN; CYTOSKELETON 14 PROTEIN; CYTOSKELETON 5 PROTEIN; CYTOSKELETON PROTEIN; FIBRINOGEN; FIBRINOGEN ALPHA; IMMUNOGLOBULIN RECEPTOR; KERATIN TYPE I; KERATIN TYPE II; PROTEINASE INHIBITOR; TEAR PROTEIN; UNCLASSIFIED DRUG; EYE PROTEIN; TEAR PROTEINS;

ADULT; ARTICLE; CAPILLARY TUBE; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; FOURIER TRANSFORM MASS SPECTROMETRY; HUMAN; HUMAN TISSUE; KERATOCONUS; MALE; MOLECULAR MECHANICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; QUANTITATIVE ANALYSIS; SPECTRUM; TEAR FILM; TISSUE LEVEL; CASE CONTROL STUDY; GENE ONTOLOGY; KERATOMETRY; METABOLISM; PROTEOMICS;

ADULT; CASE-CONTROL STUDIES; CORNEAL TOPOGRAPHY; EYE PROTEINS; FEMALE; GENE ONTOLOGY; HUMANS; KERATOCONUS; MALE; PROTEOMICS;

EID: 84887154754     PISSN: None     EISSN: 10900535     Source Type: Journal    
DOI: None     Document Type: Article

References (42)

1. De Souza GA, Godoy LM, Mann M. Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors. Genome Biol 2006; 7:R72-[PMID: 169 01338].
2. Kao WW, Vergnes JP, Ebert J, Sundar-Raj CV, Brown SI. Increased collagenase and gelatinase activities in keratoconus. Biochem Biophys Res Commun 1982; 107:929-936. [PMID: 6291521].
3. Rehany U, Lahav M, Shoshan S. Collagenolytic activity in keratoconus. Ann Ophthalmol 1982; 14:751-754. [PMID: 6289719].
4. Kenney MC, Chwa M, Escobar M, Brown D. Altered gelatino- lytic activity by keratoconus corneal cells. Biochem Biophys Res Commun 1989; 161:353-357. [PMID: 2471530].
5. Fini ME, Yue BY, Sugar J. Collagenolytic/gelatinolytic metal- loproteinases in normal and keratoconus corneas. Curr Eye Res 1992; 11:849-862. [PMID: 1424728].
6. Zhou L, Sawaguchi S, Twining SS, Sugar J, Feder RS, Yue BY. Expression of degradative enzymes and protease inhibitors in corneas with keratoconus. Invest Ophthalmol Vis Sci 1998; 39: 1117-1124. [PMID: 9620070].
7. Kenney MC, Chwa M, Opbroek AJ, Brown DJ. Increased gelatinolytic activity in keratoconus keratocyte cultures. A correlation to an altered matrix metalloproteinase-2/tissue inhibitor of metalloproteinase ratio. Cornea 1994; 13:114-124. [PMID: 8156782].
8. Lema I, Brea D, Rodriguez-Gonzalez R, Diez-Feijoo E, Sobrino T. Proteomic analysis of the tear film in patients with keratoconus. Mol Vis 2010; 16:2055-2061. [PMID: 21042560].
9. Pannebaker C, Chandler HL, Nichols JJ. Tear proteomics in keratoconus. Mol Vis 2010; 16:1949-1957. [PMID: 21031023].
10. Acera A, Suarez T, Rodriguez-Agirretxe I, Vecino E, Duran JA. Changes in tear protein profile in patients with conjunc-tivochalasis. Cornea 2011; 30:42-49. [PMID: 2 0 861728].
11. Balasubramanian SA, Mohan S, Pye DC, Willcox MD. Proteases, proteolysis and inflammatory molecules in the tears of people with keratoconus. Acta Ophthalmol (Copenh) 2012; 90:e303-309. [PMID: 22413749].
12. Balasubramanian SA, Pye DC, Willcox MD. Levels of lacto- ferrin, secretory IgA and serum albumin in the tear film of people with keratoconus. Exp Eye Res 2012; 96:132-137. [PMID: 22197752].
13. Nguyen-Khuong T, Fitzgerald A, Zhao Z, Willcox M, Walsh BJ. Improvements for the visualization of low-molecular weight protein and peptides of human tears using MALDI. Proteomics 2008; 8:3424-3432. [PMID: 18686299].
14. Ly L, Wasinger VC. Peptide enrichment and protein fraction-ation using selective electrophoresis. Proteomics 2008; 8:4197-4208. [PMID: 18814323].
15. Horvath ZS, Corthals GL, Wrigley CW, Margolis J. Multifunc- tional apparatus for electrokinetic processing of proteins. Electrophoresis 1994; 15:968-971. [PMID: 7813403].
16. Syka JE, Marto JA, Bai DL, Horning S, Senko MW, Schwartz JC, Ueberheide B, Garcia B, Busby S, Muratore T, Shabanowitz J, Hunt DF. Novel linear quadrupole ion trap/ FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. J Proteome Res 2004; 3:621-626. [PMID: 15253445].
17. Rabinowitz YS. Keratoconus. Surv Ophthalmol 1998; 42:297-319. [PMID: 9493273].
18. Fullard RJ, Snyder C. Protein levels in nonstimulated and stim- ulated tears of normal human subjects. Invest Ophthalmol Vis Sci 1990; 31:1119-1126. [PMID: 2 35 4914].
19. Sitaramamma T, Shivaji S, Rao GN. HPLC analysis of closed, open, and reflex eye tear proteins. Indian J Ophthalmol 1998; 46:239-245. [PMID: 1021830 8].
20. Smith PK, Krohn RI, Hermanson GT, Mallia AK, Gartner FH, Provenzano MD, Fujimoto EK, Goeke NM, Olson BJ, Klenk DC. Measurement of protein using bicinchoninic acid. Anal Biochem 1985; 150:76-85. [PMID: 3843705].
21. Ishihama Y, Rappsilber J, Mann M. Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics. J Proteome Res 2006; 5:988-994. [PMID: 16602707].
22. Polson C, Sarkar P, Incledon B, Raguvaran V, Grant R. Optimization of protein precipitation based upon effectiveness of protein removal and ionization effect in liquid chromatography-tandem mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci 2003; 785:263-275. [PMID: 1 2 55 41 39].
23. Green-Church KB, Nichols KK, Kleinholz NM, Zhang L, Nichols JJ. Investigation of the human tear film proteome using multiple proteomic approaches. Mol Vis 2008; 14:456-470. [PMID: 18334958].
24. Old WM, Meyer-Arendt K, Aveline-Wolf L, Pierce KG, Mendoza A, Sevinsky JR, Resing KA, Ahn NG. Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol Cell Proteomics 2005; 4:1487-1502. [PMID: 15979981].
25. Liu Y, Peng X, Tan J, Darling DS, Kaplan HJ, Dean DC. Zeb1 mutant mice as a model of posterior corneal dystrophy. Invest Ophthalmol Vis Sci 2008; 49:1843-1849. [PMID: 18436818].
26. Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS, Scott HS, Speed TP. Statistical modeling of sequencing errors in SAGE libraries. Bioinformatics 2004; 20:Suppl 1i31-39. [PMID: 15262778].
27. Zhou S, Bailey MJ, Dunn MJ, Preedy VR, Emery PW. A quantitative investigation into the losses of proteins at different stages of a two-dimensional gel electrophoresis procedure. Proteomics 2005; 5:2739-47. [PMID: 15966007]
28. IM E, Kazlauskas A. The role of cathepsins in ocular physi-ology and pathology. Exp Eye Res 2007; 84:383-388. [PMID: 16893541].
29. Berquin IM, Sloane BF. Cathepsin B expression in human tumors. Adv Exp Med Biol 1996; 389:281-294. [PMID: 8861022].
30. Kaldawy RM, Wagner J, Ching S, Seigel GM. Evidence of apoptotic cell death in keratoconus. Cornea 2002; 21:206-209. [PMID: 118620 9 7].
31. Joseph R, Srivastava OP, Pfister RR. Differential epithelial and stromal protein profiles in keratoconus and normal human corneas. Exp Eye Res 2011; 92:282-298. [PMID: 212 81627].
32. Balasubramanian SA, Pye DC, Willcox MD. Effects of eye rubbing on the levels of protease, protease activity and cyto-kines in tears: relevance in keratoconus. Clin Exp Optom 2013; 96:214-218. [PMID: 23496656].
33. Mestecky J, McGhee JR, Immunoglobulin A. IgA): molecular and cellular interactions involved in IgA biosynthesis and immune response. Adv Immunol 1987; 40:153-245. [PMID: 3296685].
34. Song W, Apodaca G, Mostov K. Transcytosis of the polymeric immunoglobulin receptor is regulated in multiple intracel-lular compartments. J Biol Chem 1994; 269:29474-29480. [PMID: 7961930].
35. Millin JA, Golub BM, Foster CS. Human basement membrane components of keratoconus and normal corneas. Invest Ophthalmol Vis Sci 1986; 27:604-607. [PMID: 3514532].
36. Newsome DA, Foidart JM, Hassell JR, Krachmer JH, Rodrigues MM, Katz SI. Detection of specific collagen types in normal and keratoconus corneas. Invest Ophthalmol Vis Sci 1981; 20:738-750. [PMID: 7016805].
37. Kao WW, Kao CW, Kaufman AH, Kombrinck KW, Converse RL, Good WV, Bugge TH, Degen JL. Healing of corneal epithelial defects in plasminogen- and fibrinogen-deficient mice. Invest Ophthalmol Vis Sci 1998; 39:502-508. [PMID: 9 5 01859].
38. Barka T, Asbell PA, van der Noen H, Prasad A. Cystatins in human tear fluid. Curr Eye Res 1991; 10:25-34. [PMID: 2029847].
39. Wasinger VC, Locke VL, Raftery MJ, Larance M, Rothemund D, Liew A, Bate I, Guilhaus M. Two-dimensional liquid chromatography/tandem mass spectrometry analysis of Gradiflow fractionated native human plasma. Proteomics 2005; 5:3397-3401. [PMID: 1610 4 0 60].
40. Wasinger V, Ly L, Fitzgerald A, Walsh B. Prefractionation, enrichment, desalting and depleting of low volume and low abundance proteins and peptides using the MF10. Methods Mol Biol 2008; 424:257-275. [PMID: 18369868].
41. Azzarolo AM, Brew K, Kota S, Ponomareva O, Schwartz J, Zylberberg C. Presence of tear lipocalin and other major proteins in lacrimal fluid of rabbits. Comp Biochem Physiol B Biochem Mol Biol 2004; 138:111-117. [PMID: 15193265].
42. Ly L, Wasinger VC. Protein and peptide fractionation, enrichment and depletion: tools for the complex proteome. Proteomics 2011; 11:513-534. [PMID: 212 41016].