Scheffersomyces parashehatae f.a., sp. nov., Scheffersomyces xylosifermentans f.a., sp. nov., Candida broadrunensis sp. nov. and Candida manassasensis sp. nov., novel yeasts associated with wood-ingesting insects, and their ecological and biofuel implications

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART 11, 2013, Pages 4330-4339

  Suh, Sung Oui ^a   Houseknecht, Janice L ^a   Gujjari, Pushpa ^a   Zhou, Jianlong J ^a  

^a AMERICAN TYPE CULTURE COLLECTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOFUEL; RIBOSOME RNA; XYLOSE;

ARTICLE; BEETLE; CANDIDA BROADRUNENSIS; CANDIDA GLAEBOSA; CANDIDA MANASSASENSIS; CANDIDA PALMIOLEOPHILA; CLADISTICS; DNA SEQUENCE; FERMENTATION; FUNGAL STRAIN; FUNGUS; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SCHEFFERSOMYCES COIPOMOENSIS; SCHEFFERSOMYCES ERGATENSIS; SCHEFFERSOMYCES ILLINOINENSIS; SCHEFFERSOMYCES PARASHEHATAE; SCHEFFERSOMYCES SHEHATAE; SCHEFFERSOMYCES STIPITIS; SCHEFFERSOMYCES XYLOSIFERMENTANS; SEQUENCE ANALYSIS; SISTER GROUP; SPECIES HABITAT; TAXONOMIC IDENTIFICATION; WOOD DECAY FUNGUS;

EID: 84887103920     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.053009-0     Document Type: Article

References (42)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Barnett, J. A., Payne, R. W. & Yarrow, D. (2000). Yeasts: Characteristics and Identification, 3rd edn. Cambridge: Cambridge University Press.
3. Dowd, P. F. (1992). Insect fungal symbionts: a promising source of detoxifying enzymes. J Ind Microbiol 9, 149-161.
4. Felsenstein, J. (2009). PHYLIP (Phylogeny Inference Package) version 3.69. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
5. Gujjari, P., Suh, S.-O., Lee, C.-F. & Zhou, J. J. (2011). Trichosporon xylopini sp. nov., a hemicellulose-degrading yeast isolated from the wood-inhabiting beetle Xylopinus saperdioides. Int J Syst Evol Microbiol 61, 2538-2542.
6. Houseknecht, J. L., Hart, E. L., Suh, S.-O. & Zhou, J. J. (2011). Yeasts in the Sugiyamaella clade associated with wood-ingesting beetles and the proposal of Candida bullrunensis sp. nov. Int J Syst Evol Microbiol 61, 1751-1756.
7. Jeffries, T. W. (2006). Engineering yeasts for xylose metabolism. Curr Opin Biotechnol 17, 320-326.
8. Jeffries, T. W. & Shi, N. Q. (1999). Genetic engineering for improved xylose fermentation by yeasts. Adv Biochem Eng Biotechnol 65, 117-161.
9. Jeffries, T. W., Grigoriev, I. V., Grimwood, J., Laplaza, J. M., Aerts, A., Salamov, A., Schmutz, J., Lindquist, E., Dehal, P. & other authors (2007). Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25, 319-326.
10. Kurtzman, C. P. (1990). Candida shehatae-genetic diversity and phylogenetic relationships with other xylose-fermenting yeasts. Antonie van Leeuwenhoek 57, 215-222.
11. Kurtzman, C. P. (2006). Yeast species recognition from gene sequence analyses and other molecular methods. Mycoscience 47, 65-71.
12. Kurtzman, C. P. (2011). Scheffersomyces Kurtzman & M. Suzuki (2010). In The Yeasts, a Taxonomic Study, 5th edn, pp. 773-777. Edited by C. P. Kurtzman, J. W. Fell & T. Boekhout. London: Elsevier.
13. Kurtzman, C. P. & Robnett, C. J. (1998). Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73, 331-371.
14. Kurtzman, C. P. & Robnett, C. J. (2003). Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses. FEMS Yeast Res 3, 417-432.
15. Kurtzman, C. P. & Robnett, C. J. (2013). Relationships among genera of the Saccharomycotina (Ascomycota) from multigene phylogenetic analysis of type species. FEMS Yeast Res 13, 23-33.
16. Kurtzman, C. P. & Suzuki, M. (2010). Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces, and Scheffersomyces. Mycoscience 51, 2-14.
17. Kurtzman, C. P., Fell, J. W., Boekhout, T. & Robert, V. (2011). Methods for isolation, phenotypic characterization and maintenance of yeasts. In The Yeasts, a Taxonomic Study, 5th edn, pp. 87-110. Edited by C. P. Kurtzman, J. W. Fell & T. Boekhout. London: Elsevier.
18. Lachance, M.-A., Boekhout, T., Scorzetti, G., Fell, J. W. & Kurtzman, C. P. (2011). Candida Berkhout (1923). In The Yeasts, a Taxonomic Study, 5th edn, pp. 987-1278. Edited by C. P. Kurtzman, J. W. Fell & T. Boekhout. London: Elsevier.
19. Lichtwardt, R. W., White, M. M., Cafaro, M. J. & Misra, J. K. (1999). Fungi associated with passalid beetles and their mites. Mycologia 91, 694-702.
20. Matheny, P. B., Liu, Y. J., Ammirati, J. F. & Hall, B. D. (2002). Using RPB1 sequences to improve phylogenetic inference among mush-rooms (Inocybe, Agaricales). Am J Bot 89, 688-698.
21. Nardi, J. B., Bee, C. M., Miller, L. A., Nguyen, N. H., Suh, S.-O. & Blackwell, M. (2006). Communities of microbes that inhabit the changing hindgut landscape of a subsocial beetle. Arthropod Struct Dev 35, 57-68.
22. Nguyen, N. H., Suh, S.-O., Marshall, C. J. & Blackwell, M. (2006). Morphological and ecological similarities: wood-boring beetles associated with novel xylose-fermenting yeasts, Spathaspora passali-darum gen. sp. nov. and Candida jeffriesii sp. nov. Mycol Res 110, 1232-1241.
23. Perlack, R. D., Wright, L. L., Turhollow, A. F., Graham, R. L., Stokes, B. J. & Erbach, D. C. (2005). Biomass as feedstock for a bioenergy and bioproducts industry: the technical feasibility of a billion-ton annual supply. DOE/GO-102995-2135. ORNL/TM-2005. Oak Ridge, TN: US Department of Energy and Oak Ridge National Laboratory. http://www1.eere.energy.gov/biomass/pdfs/final_billionton_vision_ report2.pdf
24. Pointing, S. B. (1999). Qualitative methods for the determination of lignocellulolytic enzyme production by tropical fungi. Fungal Divers 2, 17-33.
25. Prillinger, H., Messner, R., Konig, H., Bauer, R., Lopandic, K., Molnar, O., Dangel, P., Weigang, F., Kirisits, T. & other authors (1996). Yeasts associated with termites: a phenotypic and genotypic characterization and use of coevolution for dating evolutionary radiations in asco-and basidiomycetes. Syst Appl Microbiol 19, 265-283.
26. Rehner, S. A. & Buckley, E. (2005). A Beauveria phylogeny inferred from nuclear ITS and EF1-a sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs. Mycologia 97, 84-98.
27. Ronquist, F. & Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
28. Schafer, A., Konrad, R., Kuhnigk, T., Kampfer, P., Hertel, H. & Konig, H. (1996). Hemicellulose-degrading bacteria and yeasts from the termite gut. J Appl Bacteriol 80, 471-478.
29. Schoch, C. L., Seifert, K. A., Huhndorf, S., Robert, V., Spouge, J. L., Levesque, C. A., Chen, W. & Fungal Barcoding Consortium (2012). Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci U S A 109, 6241-6246.
30. Stiller, J. W. & Hall, B. D. (1997). The origin of red algae: implications for plastid evolution. Proc Natl Acad Sci U S A 94, 4520-4525.
31. Suh, S.-O. & Zhou, J. J. (2010). Methylotrophic yeasts near Ogataea (Hansenula) polymorpha: a proposal of Ogataea angusta comb. nov. and Candida parapolymorpha sp. nov. FEMS Yeast Res 10, 631-638.
32. Suh, S.-O. & Zhou, J. J. (2011). Kazachstania intestinalis sp. nov., an ascosporogenous yeast from the gut of passalid beetle Odontotaenius disjunctus. Antonie van Leeuwenhoek 100, 109-115.
33. Suh, S.-O., Marshall, C. J., McHugh, J. V. & Blackwell, M. (2003). Wood ingestion by passalid beetles in the presence of xylosefermenting gut yeasts. Mol Ecol 12, 3137-3145.
34. Suh, S.-O., White, M. M., Nguyen, N. H. & Blackwell, M. (2004). The status and characterization of Enteroramus dimorphus: a xylosefermenting yeast attached to the gut of beetles. Mycologia 96, 756-760.
35. Suh, S.-O., McHugh, J. V., Pollock, D. D. & Blackwell, M. (2005). The beetle gut: a hyperdiverse source of novel yeasts. Mycol Res 109, 261-265.
36. Swofford, D. L. (2002). PAUP. Phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sunderland, MA: Sinauer Associates.
37. Tatusova, T. A. & Madden, T. L. (1999). BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174, 247-250.
38. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
39. Urbina, H. & Blackwell, M. (2012). Multilocus phylogenetic study of the Scheffersomyces yeast clade and characterization of the N-terminal region of xylose reductase gene. PLoS ONE 7, e39128.
40. Urbina, H., Frank, R. & Blackwell, M. (2013). Scheffersomyces cryptocercus: a new xylose-fermenting yeast associated with the gut of wood roaches and new combinations in the Sugiyamaella yeast clade. Mycologia 105, 650-660.
41. Vega, E. F. & Dowd, P. E. (2005). The role of yeast as insect endosymbionts. In Insect-Fungal Associations: Ecology and Evolution, pp. 211-243. Edited by F. E. Vega & M. Blackwell. New York: Oxford University Press.
42. Zhang, N., Suh, S. O. & Blackwell, M. (2003). Microorganisms in the gut of beetles: evidence from molecular cloning. J Invertebr Pathol 84, 226-233.