메뉴 건너뛰기




Volumn 103, Issue 11, 2013, Pages 1103-1107

Potential of DNA barcoding for detecting quarantine fungi

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME C OXIDASE; FUNGAL DNA; RIBOSOMAL SPACER DNA;

EID: 84887043207     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-12-12-0321-R     Document Type: Article
Times cited : (22)

References (61)
  • 2
    • 65249137594 scopus 로고    scopus 로고
    • Sequence-based identification of Aspergillus, Fusarium, and Mucorales species in the clinical mycology laboratory: Where are we and where should we go from here?
    • Balajee, S. A., Borman, A. M., Brandt, M. E., Cano, J., Cuenca-Estrella, M., Dannaoui, E., Guarro, J., Haase, G., Kibbler, C. C., and Meyer, W. 2009. Sequence-based identification of Aspergillus, Fusarium, and Mucorales species in the clinical mycology laboratory: Where are we and where should we go from here? J. Clin. Microbiol. 47:877-884.
    • (2009) J. Clin. Microbiol. , vol.47 , pp. 877-884
    • Balajee, S.A.1    Borman, A.M.2    Brandt, M.E.3    Cano, J.4    Cuenca-Estrella, M.5    Dannaoui, E.6    Guarro, J.7    Haase, G.8    Kibbler, C.C.9    Meyer, W.10
  • 3
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S. L., Roger, A. J., Wenk-Siefert, I., and Doolittle, W. F. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290:972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 4
    • 17844389878 scopus 로고    scopus 로고
    • Characterisation of Phoma tracheiphila by RAPDPCR, microsatellite-primed PCR and ITS rDNA sequencing and development of specific primers for in planta PCR detection
    • Balmas, V., Scherm, B., Ghignone, S., Salem, A. O. M., Cacciola, S. O., and Migheli, Q. 2005. Characterisation of Phoma tracheiphila by RAPDPCR, microsatellite-primed PCR and ITS rDNA sequencing and development of specific primers for in planta PCR detection. Eur. J. Plant Pathol. 111:235-247.
    • (2005) Eur. J. Plant Pathol. , vol.111 , pp. 235-247
    • Balmas, V.1    Scherm, B.2    Ghignone, S.3    Salem, A.O.M.4    Cacciola, S.O.5    Migheli, Q.6
  • 5
    • 77952765171 scopus 로고    scopus 로고
    • Current state and perspectives of fungal DNA barcoding and rapid identification procedures
    • Begerow, D., Nilsson, H., Unterseher, M., and Maier, W. 2010. Current state and perspectives of fungal DNA barcoding and rapid identification procedures. Appl. Microbiol. Biotechnol. 87:99-108.
    • (2010) Appl. Microbiol. Biotechnol. , vol.87 , pp. 99-108
    • Begerow, D.1    Nilsson, H.2    Unterseher, M.3    Maier, W.4
  • 6
    • 84887080500 scopus 로고    scopus 로고
    • Canadian Food Inspection Agency. Pests Regulated by Canada. http://www.inspection. gc.ca/english/plaveg/protect/listpespare.shtml
  • 7
    • 77955014461 scopus 로고    scopus 로고
    • DNA barcoding: A six-question tour to improve users' awareness about the method
    • Casiraghi, M., Labra, M., Ferri, E., Galimberti, A., and De Mattia, F. 2010. DNA barcoding: A six-question tour to improve users' awareness about the method. Brief. Bioinform. 11:440-453.
    • (2010) Brief. Bioinform. , vol.11 , pp. 440-453
    • Casiraghi, M.1    Labra, M.2    Ferri, E.3    Galimberti, A.4    De Mattia, F.5
  • 9
    • 77649108109 scopus 로고    scopus 로고
    • Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species
    • Chen, S., Yao, H., Han, J., Liu, C., Song, J., Shi, L., Zhu, Y., Ma, X., Gao, T., and Pang, X. 2010. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PloS One 5:e8613.
    • (2010) PloS One , vol.5
    • Chen, S.1    Yao, H.2    Han, J.3    Liu, C.4    Song, J.5    Shi, L.6    Zhu, Y.7    Ma, X.8    Gao, T.9    Pang, X.10
  • 10
    • 7444232185 scopus 로고    scopus 로고
    • Identification of Monilinia fructigena, M. Fructicola, M. Laxa, and Monilia polystroma on inoculated and naturally infected fruit using multiplex PCR
    • Côté, M. J., Tardif, M. C., and Meldrum, A. J. 2004. Identification of Monilinia fructigena, M.fructicola, M. laxa, and Monilia polystroma on inoculated and naturally infected fruit using multiplex PCR. Plant Dis. 88:1219-1225.
    • (2004) Plant Dis. , vol.88 , pp. 1219-1225
    • Côté, M.J.1    Tardif, M.C.2    Meldrum, A.J.3
  • 12
    • 84887038136 scopus 로고    scopus 로고
    • EPPO standards-diagnostic protocols for regulated pests-PM7/29 Tilletia indica
    • EPPO
    • EPPO. 2004. EPPO standards-diagnostic protocols for regulated pests-PM7/29 Tilletia indica. EPPO Bull. 34.
    • (2004) EPPO Bull. , pp. 34
  • 14
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes application to the identification of mycorrhizae and rusts
    • Gardes, M., and Bruns, T. D. 1993. ITS primers with enhanced specificity for basidiomycetes application to the identification of mycorrhizae and rusts. Mol. Ecol. 2:113-118.
    • (1993) Mol. Ecol. , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 17
    • 0028969372 scopus 로고
    • Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes
    • Glass, N. L., and Donaldson, G. C. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl. Environ. Microbiol. 61:1323-1330.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1323-1330
    • Glass, N.L.1    Donaldson, G.C.2
  • 18
    • 33947620069 scopus 로고    scopus 로고
    • DNA barcoding: How it complements taxonomy, molecular phylogenetics and population genetics
    • Hajibabaei, M., Singer, G. A. C., Hebert, P. D. N., and Hickey, D. A. 2007. DNA barcoding: How it complements taxonomy, molecular phylogenetics and population genetics. TRENDS Genet. 23:167-172.
    • (2007) TRENDS Genet. , vol.23 , pp. 167-172
    • Hajibabaei, M.1    Singer, G.A.C.2    Hebert, P.D.N.3    Hickey, D.A.4
  • 19
    • 22744458792 scopus 로고    scopus 로고
    • Reply to the comment by L. Prendini on "Identifying spiders through DNA barcodes"
    • Hebert, P. D. N., Rowan, D., and Barrett, H. 2005. Reply to the comment by L. Prendini on "Identifying spiders through DNA barcodes". Can. J. Zool. 83:505-506.
    • (2005) Can. J. Zool. , vol.83 , pp. 505-506
    • Hebert, P.D.N.1    Rowan, D.2    Barrett, H.3
  • 21
    • 31344432889 scopus 로고    scopus 로고
    • The promise of DNA barcoding for taxonomy
    • Hebert, P. D. N., and Gregory, T. R. 2005. The promise of DNA barcoding for taxonomy. Syst. Biol. 54:852-859.
    • (2005) Syst. Biol. , vol.54 , pp. 852-859
    • Hebert, P.D.N.1    Gregory, T.R.2
  • 27
    • 77951631088 scopus 로고    scopus 로고
    • A two-locus global DNA barcode for land plants: The coding rbcL gene complements the non-coding trnHpsbA spacer region
    • Kress, W. J., and Erickson, D. L. 2007. A two-locus global DNA barcode for land plants: The coding rbcL gene complements the non-coding trnHpsbA spacer region. PLoS One 2:e508.
    • (2007) PLoS One , vol.2
    • Kress, W.J.1    Erickson, D.L.2
  • 29
  • 30
    • 66649137511 scopus 로고    scopus 로고
    • DNAbased species level detection of Glomeromycota: One PCR primer set for all arbuscular mycorrhizal fungi
    • Krüger, M., Stockinger, H., Krüger, C., and Schüßler, A. 2009. DNAbased species level detection of Glomeromycota: One PCR primer set for all arbuscular mycorrhizal fungi. New Phytol. 183:212-223.
    • (2009) New Phytol. , vol.183 , pp. 212-223
    • Krüger, M.1    Stockinger, H.2    Krüger, C.3    Schüßler, A.4
  • 31
    • 84887125741 scopus 로고    scopus 로고
    • Using DNA barcoding for diagnostics and monitoring of plant pathogens and pests, a Canadian perspective
    • Haarlem, the Netherlands
    • Lévesque, C. A. 2012. Using DNA barcoding for diagnostics and monitoring of plant pathogens and pests, a Canadian perspective. In QBOLEPPO conference on DNA barcoding and diagnostic methods for plant pests. Haarlem, the Netherlands.
    • (2012) QBOLEPPO Conference on DNA Barcoding and Diagnostic Methods for Plant Pests.
    • Lévesque, C.A.1
  • 32
    • 70450231696 scopus 로고    scopus 로고
    • AFLP analysis of Fusarium circinatum and relative species
    • Liao, T., Ye, J., and Chen, J. 2009. AFLP analysis of Fusarium circinatum and relative species. Frontiers For. China 4:478-483.
    • (2009) Frontiers For. China , vol.4 , pp. 478-483
    • Liao, T.1    Ye, J.2    Chen, J.3
  • 33
    • 84887060549 scopus 로고    scopus 로고
    • List of Quarantine or Regulated Pests and conditions for import of major commodities to Mozambique. http://members.wto.org/crnattachments/2012/sps/MOZ/ 12-1490-00-e.pdf
  • 34
    • 77953303125 scopus 로고    scopus 로고
    • Mitochondrial heteroplasmy and DNA barcoding in Hawaiian Hylaeus (Nesoprosopis) bees (Hymenoptera: Colletidae)
    • Magnacca, K. N., and Brown, M. J. F. 2010. Mitochondrial heteroplasmy and DNA barcoding in Hawaiian Hylaeus (Nesoprosopis) bees (Hymenoptera: Colletidae). BMC Evol. Biol. 10:174.
    • (2010) BMC Evol. Biol. , vol.10 , pp. 174
    • Magnacca, K.N.1    Brown, M.J.F.2
  • 35
    • 77951224779 scopus 로고    scopus 로고
    • Comparative performances of DNA barcoding across insect orders
    • Massimiliano, V., Thierry, B., Bruno, N., and Marc, D. M. 2010. Comparative performances of DNA barcoding across insect orders. BMC Bioinform. 11:206.
    • (2010) BMC Bioinform. , vol.11 , pp. 206
    • Massimiliano, V.1    Thierry, B.2    Bruno, N.3    Marc, D.M.4
  • 38
    • 77954742750 scopus 로고    scopus 로고
    • Assessing the effects of primer specificity on eliminating numt coamplification in DNA barcoding: A case study from Orthoptera (Arthropoda: Insecta)
    • Moulton, M. J., Song, H., and Whiting, M. F. 2010. Assessing the effects of primer specificity on eliminating numt coamplification in DNA barcoding: A case study from Orthoptera (Arthropoda: Insecta). Mol. Ecol. Resour. 10:615-627.
    • (2010) Mol. Ecol. Resour. , vol.10 , pp. 615-627
    • Moulton, M.J.1    Song, H.2    Whiting, M.F.3
  • 40
    • 84887125201 scopus 로고    scopus 로고
    • Plant Protection Station of Japan. (Current) Quarantine Pest List. http://www.pps.go.jp/english/law/list1.html
  • 41
    • 84887051492 scopus 로고    scopus 로고
    • Plant Protection Station of Japan. (Current) Provisional Quarantine Pest List. http://www.pps.go.jp/english/law/pqp-list-2012.pdf
  • 43
    • 84887097757 scopus 로고    scopus 로고
    • Queensland Government. Department of Agriculture, Fisheries, and Forestry
    • Queensland Government. Department of Agriculture, Fisheries, and Forestry. A-Z list of significant plant pest and diseases. http://www.daff.qld. gov. au/plants/health-pests-diseases/a-z-significant
    • A-Z List of Significant Plant Pest and Diseases
  • 45
    • 78650424081 scopus 로고    scopus 로고
    • Multilocus species identification and fungal DNA barcoding: Insights from blue stain fungal symbionts of the mountain pine beetle
    • Roe, A. D., Rice, A. V., Bromilow, S. E., Cooke, J. E. K., and Sperling, F. A. H. 2010. Multilocus species identification and fungal DNA barcoding: Insights from blue stain fungal symbionts of the mountain pine beetle. Mol. Ecol. Resour. 10:946-959.
    • (2010) Mol. Ecol. Resour. , vol.10 , pp. 946-959
    • Roe, A.D.1    Rice, A.V.2    Bromilow, S.E.3    Cooke, J.E.K.4    Sperling, F.A.H.5
  • 46
    • 41849149675 scopus 로고    scopus 로고
    • Testing the reliability of genetic methods of species identification via simulation
    • Ross, H. A., Murugan, S., and Li, W. L. S. 2008. Testing the reliability of genetic methods of species identification via simulation. Syst. Biol. 57:216-230.
    • (2008) Syst. Biol. , vol.57 , pp. 216-230
    • Ross, H.A.1    Murugan, S.2    Li, W.L.S.3
  • 47
    • 71049175652 scopus 로고    scopus 로고
    • Molecular identification of Phytophthora spp affecting some economically important crops in Eastern India through ITS-RFLP and sequencing of the ITS region
    • Roy, S. G., Bhattacharyya, S., Mukherjee, S. K., and Khatua, D. C. 2009. Molecular identification of Phytophthora spp. affecting some economically important crops in Eastern India through ITS-RFLP and sequencing of the ITS region. J. Phytopathol. 157:666-674.
    • (2009) J. Phytopathol. , vol.157 , pp. 666-674
    • Roy, S.G.1    Bhattacharyya, S.2    Mukherjee, S.K.3    Khatua, D.C.4
  • 48
    • 10644271884 scopus 로고    scopus 로고
    • Phylogenetic analysis of Penicillium subgenus Penicillium using partial ß-tubulin sequences
    • Samson, R. A., Seifert, K. A., Kuijpers, A. F. A., Houbraken, J., and Frisvad, J. C. 2004. Phylogenetic analysis of Penicillium subgenus Penicillium using partial ß-tubulin sequences. Stud. Mycol. 49:175-200.
    • (2004) Stud. Mycol. , vol.49 , pp. 175-200
    • Samson, R.A.1    Seifert, K.A.2    Kuijpers, A.F.A.3    Houbraken, J.4    Frisvad, J.C.5
  • 51
    • 65349088516 scopus 로고    scopus 로고
    • Progress towards DNA barcoding of fungi
    • Seifert, K. A. 2009. Progress towards DNA barcoding of fungi. Mol. Ecol. Resour. 9:83-89.
    • (2009) Mol. Ecol. Resour. , vol.9 , pp. 83-89
    • Seifert, K.A.1
  • 54
    • 60049096145 scopus 로고    scopus 로고
    • A one-tube fluorescent assay for the quarantine detection and identification of Tilletia indica and other grass bunts in wheat
    • Tan, M. K., Ghalayini, A., Sharma, I., Yi, J., Shivas, R., Priest, M., and Wright, D. 2009. A one-tube fluorescent assay for the quarantine detection and identification of Tilletia indica and other grass bunts in wheat. Austral. Plant Pathol. 38:101-109.
    • (2009) Austral. Plant Pathol. , vol.38 , pp. 101-109
    • Tan, M.K.1    Ghalayini, A.2    Sharma, I.3    Yi, J.4    Shivas, R.5    Priest, M.6    Wright, D.7
  • 55
    • 77953172245 scopus 로고    scopus 로고
    • An enhanced protocol for the quarantine detection of Tilletia indica and economic comparison with the current standard. Austral
    • Tan, M. K., Brennan, J. P., Wright, D., and Murray, G. M. 2010. An enhanced protocol for the quarantine detection of Tilletia indica and economic comparison with the current standard. Austral. Plant Pathol. 39:334-342.
    • (2010) Plant Pathol. , vol.39 , pp. 334-342
    • Tan, M.K.1    Brennan, J.P.2    Wright, D.3    Murray, G.M.4
  • 56
    • 32044441841 scopus 로고    scopus 로고
    • On-site DNA extraction and real-time PCR for detection of Phytophthora ramorum in the field
    • Tomlinson, J. A., Boonham, N., Hughes, K. J. D., Griffin, R. L., and Barker, I. 2005. On-site DNA extraction and real-time PCR for detection of Phytophthora ramorum in the field. Appl. Environ. Microbiol. 71:6702-6710.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 6702-6710
    • Tomlinson, J.A.1    Boonham, N.2    Hughes, K.J.D.3    Griffin, R.L.4    Barker, I.5
  • 59
    • 47249113020 scopus 로고    scopus 로고
    • Exophiala spinifera and its allies: Diagnostics from morphology to DNA barcoding
    • Zeng, J. S., and De Hoog, G. S. 2008. Exophiala spinifera and its allies: Diagnostics from morphology to DNA barcoding. Med. Mycol. 46:193-208.
    • (2008) Med. Mycol. , vol.46 , pp. 193-208
    • Zeng, J.S.1    De Hoog, G.S.2
  • 60
    • 84856747252 scopus 로고    scopus 로고
    • Selection of a DNA barcode for Nectriaceae from fungal whole-genomes
    • Zeng, Z. Q., Zhao, P., Luo, J., Zhuang, W. Y., and Yu, Z. H. 2012. Selection of a DNA barcode for Nectriaceae from fungal whole-genomes. Sci. China Life Sci. 55:80-88.
    • (2012) Sci. China Life Sci. , vol.55 , pp. 80-88
    • Zeng, Z.Q.1    Zhao, P.2    Luo, J.3    Zhuang, W.Y.4    Yu, Z.H.5
  • 61
    • 79955803223 scopus 로고    scopus 로고
    • Practice towards DNA barcoding of the nectriaceous fungi
    • Zhao, P., Luo, J., and Zhuang, W. Y. 2011. Practice towards DNA barcoding of the nectriaceous fungi. Fungal Divers. 46:183-191.
    • (2011) Fungal Divers. , vol.46 , pp. 183-191
    • Zhao, P.1    Luo, J.2    Zhuang, W.Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.