An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization

Journal of Chemical Physics

Volumn 139, Issue 14, 2013, Pages

  Hinckley, Daniel M ^a   Freeman, Gordon S ^a   Whitmer, Jonathan K ^b   De Pablo, Juan J ^b,c  

^a University of Wisconsin Madison   (United States)

^b ARGONNE NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANISOTROPIC POTENTIAL; BASE PAIR INTERACTIONS; COARSE GRAINED MODELS; DNA MELTING TEMPERATURES; ENGINEERING APPLICATIONS; FREE ENERGY SURFACE; METADYNAMICS SIMULATIONS; QUANTITATIVE AGREEMENT;

DNA; EXPERIMENTS; NUCLEOTIDES; RATE CONSTANTS; THERMODYNAMICS;

DNA SEQUENCES;

DNA; NUCLEOTIDE;

CHEMISTRY; CONFORMATION; MOLECULAR DYNAMICS; NUCLEIC ACID HYBRIDIZATION; THERMODYNAMICS; ARTICLE;

DNA; MOLECULAR DYNAMICS SIMULATION; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDES; THERMODYNAMICS;

EID: 84886920979     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4822042     Document Type: Article

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