-
2
-
-
82555173710
-
-
Linak, M. C.; Tourdot, R.; Dorfman, K. D. J. Chem. Phys. 2011, 135, 205102-12
-
(2011)
J. Chem. Phys.
, vol.135
, pp. 205102-205112
-
-
Linak, M.C.1
Tourdot, R.2
Dorfman, K.D.3
-
3
-
-
79951994384
-
-
Knotts, T. A., IV; Rathore, N.; Schwartz, D. C.; de Pablo, J. J. J. Chem. Phys. 2007, 126
-
(2007)
J. Chem. Phys.
, pp. 126
-
-
Knotts, T.A.I.V.1
Rathore, N.2
Schwartz, D.C.3
De Pablo, J.J.4
-
4
-
-
77949889822
-
-
Morriss-Andrews, A.; Rottler, J.; Plotkin, S. S. J. Chem. Phys. 2010, 132, 035105-18
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 035105-035118
-
-
Morriss-Andrews, A.1
Rottler, J.2
Plotkin, S.S.3
-
5
-
-
63649131960
-
-
Sambriski, E. J.; Schwartz, D. C.; de Pablo, J. J. Biophys. J. 2009, 96, 1675-1690
-
(2009)
Biophys. J.
, vol.96
, pp. 1675-1690
-
-
Sambriski, E.J.1
Schwartz, D.C.2
De Pablo, J.J.3
-
6
-
-
55349123996
-
-
Poulain, P.; Saladin, A.; Hartmann, B.; Prévost, C. J. Comput. Chem. 2008, 29, 2582-2592
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 2582-2592
-
-
Poulain, P.1
Saladin, A.2
Hartmann, B.3
Prévost, C.4
-
10
-
-
3042683179
-
-
Srinivas, G.; Shelley, J. C.; Nielsen, S. O.; Discher, D. E.; Klein, M. L. J. Phys. Chem. B 2004, 108, 8153-8160
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 8153-8160
-
-
Srinivas, G.1
Shelley, J.C.2
Nielsen, S.O.3
Discher, D.E.4
Klein, M.L.5
-
14
-
-
79952091255
-
-
Ouldridge, T. E.; Louis, A. A.; Doye, J. P. K. J. Chem. Phys. 2011, 134, 085101-22
-
(2011)
J. Chem. Phys.
, vol.134
, pp. 085101-085122
-
-
Ouldridge, T.E.1
Louis, A.A.2
Doye, J.P.K.3
-
15
-
-
77952355398
-
-
Dans, P. D.; Zeida, A.; Machado, M. a. R.; Pantano, S. J. Chem. Theory Comput. 2010, 6, 1711-1725
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 1711-1725
-
-
Dans, P.D.1
Zeida, A.2
MacHado, A.M.R.3
Pantano, S.4
-
16
-
-
34548020295
-
-
Basdevant, N.; Borgis, D.; Ha-Duong, T. J. Phys. Chem. B 2007, 111, 9390-9399
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 9390-9399
-
-
Basdevant, N.1
Borgis, D.2
Ha-Duong, T.3
-
17
-
-
85168633957
-
-
Chen, Y. L.; Graham, M. D.; de Pablo, J. J.; Randall, G. C.; Gupta, M.; Doyle, P. S. Phys. Rev. E 2004, 70, 4
-
(2004)
Phys. Rev. e
, vol.70
, pp. 4
-
-
Chen, Y.L.1
Graham, M.D.2
De Pablo, J.J.3
Randall, G.C.4
Gupta, M.5
Doyle, P.S.6
-
18
-
-
33750980984
-
-
Venturoli, M.; Maddalena Sperotto, M.; Kranenburg, M.; Smit, B. Phys. Rep. 2006, 437, 1-54
-
(2006)
Phys. Rep.
, vol.437
, pp. 1-54
-
-
Venturoli, M.1
Maddalena Sperotto, M.2
Kranenburg, M.3
Smit, B.4
-
19
-
-
77951534711
-
-
Sayar, M.; Avşaroğlu, B.; KabakçIoğlu, A. Phys. Rev. E 2010, 81, 041916
-
(2010)
Phys. Rev. e
, vol.81
, pp. 041916
-
-
Sayar, M.1
Avsìarogìlu, B.2
Kabakcìiogìlu, A.3
-
21
-
-
44449099745
-
-
Voltz, K.; Trylska, J.; Tozzini, V.; Kurkal-Siebert, V.; Langowski, J.; Smith, J. J. Comput. Chem. 2008, 29, 1429-1439
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 1429-1439
-
-
Voltz, K.1
Trylska, J.2
Tozzini, V.3
Kurkal-Siebert, V.4
Langowski, J.5
Smith, J.6
-
22
-
-
70350741672
-
-
Cuesta-López, S.; Peyrard, M.; Graham, D. J. Eur. Phys. J. E 2005, 16, 235-246
-
(2005)
Eur. Phys. J. e
, vol.16
, pp. 235-246
-
-
Cuesta-López, S.1
Peyrard, M.2
Graham, D.J.3
-
23
-
-
33846213672
-
-
Tozzini, V.; Rocchia, W.; McCammon, J. A. J. Chem. Theory Comput. 2006, 2, 667-673
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 667-673
-
-
Tozzini, V.1
Rocchia, W.2
McCammon, J.A.3
-
25
-
-
0042783950
-
-
Reith, D.; Pütz, M.; Müller-Plathe, F. J. Comput. Chem. 2003, 24, 1624-1636
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1624-1636
-
-
Reith, D.1
Pütz, M.2
Müller-Plathe, F.3
-
26
-
-
3042632970
-
-
Balaeff, A.; Koudella, C. R.; Mahadevan, L.; Schulten, K. Phil. Trans. R. Soc. Lond 2004, 362, 1355-1371
-
(2004)
Phil. Trans. R. Soc. Lond
, vol.362
, pp. 1355-1371
-
-
Balaeff, A.1
Koudella, C.R.2
Mahadevan, L.3
Schulten, K.4
-
31
-
-
27344436659
-
-
Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kalé, L.; Schulten, K. J. Comput. Chem. 2005, 26, 1781-1802
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kalé, L.9
Schulten, K.10
-
32
-
-
77149152994
-
-
version 2.7 b1; Theoretical Biophysics Group, University of Illinois and Beckman Institute: Urbana, IL.
-
Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kalé, L.; Schulten, K. NAMD, version 2.7 b1; Theoretical Biophysics Group, University of Illinois and Beckman Institute: Urbana, IL, 2009.
-
(2009)
NAMD
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kalé, L.9
Schulten, K.10
-
33
-
-
32644434270
-
-
Yakovchuk, P.; Protozanova, E.; Frank-Kamenetskii, M. D. Nucleic Acids Res. 2006, 34, 564-574
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 564-574
-
-
Yakovchuk, P.1
Protozanova, E.2
Frank-Kamenetskii, M.D.3
-
35
-
-
0035850731
-
-
Olson, W. K.; Bansal, M.; Burley, S. K.; Dickerson, R. E.; Gerstein, M.; Harvey, S. C.; Heinemann, U.; Lu, X.-J.; Neidle, S.; Shakked, Z. M.; Sklenar, H.; Suzuki, M.; Tung, C. S.; Westhof, E.; Wolberger, C.; Berman, H. M. J. Mol. Biol. 2001, 313, 229-237
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 229-237
-
-
Olson, W.K.1
Bansal, M.2
Burley, S.K.3
Dickerson, R.E.4
Gerstein, M.5
Harvey, S.C.6
Heinemann, U.7
Lu, X.-J.8
Neidle, S.9
Shakked, Z.M.10
Sklenar, H.11
Suzuki, M.12
Tung, C.S.13
Westhof, E.14
Wolberger, C.15
Berman, H.M.16
-
36
-
-
0028071373
-
-
Bustamante, C.; Marko, J. F.; Siggia, E. D.; Smith, S. Science 1994, 265, 1599-600
-
(1994)
Science
, vol.265
, pp. 1599-1600
-
-
Bustamante, C.1
Marko, J.F.2
Siggia, E.D.3
Smith, S.4
-
37
-
-
0030024985
-
-
Smith, S. B.; Cui, Y.; Bustamante, C. Science 1996, 271, 795-799
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
39
-
-
0019556972
-
-
Olsthoorn, C. S. M.; Bostelaar, L. J.; De Rooij, J. F. M.; Van Boom, J. H.; Altona, C. Eur. J. Biochem. 1981, 115, 309-321
-
(1981)
Eur. J. Biochem.
, vol.115
, pp. 309-321
-
-
Olsthoorn, C.S.M.1
Bostelaar, L.J.2
De Rooij, J.F.M.3
Van Boom, J.H.4
Altona, C.5
|