General approach for engineering small-molecule-binding DNA split aptamers

Analytical Chemistry

Volumn 85, Issue 20, 2013, Pages 9916-9923

  Kent, Alexandra D ^a   Spiropulos, Nicholas G ^a   Heemstra, Jennifer M ^a  

^a UNIVERSITY OF UTAH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER SEQUENCES; BIOSENSING APPLICATIONS; GENERAL METHOD; POTENTIAL SUBSTRATE; RECOGNITION ELEMENT; RELIABLE METHODS; SELECTIVE ASSEMBLY; SMALL MOLECULES;

BINDING SITES; DNA; MOLECULES;

DNA SEQUENCES;

APTAMER; LIGAND; STEROID;

ARTICLE; COMBINATORIAL CHEMISTRY; GENETICS; METABOLISM; METHODOLOGY; NUCLEOTIDE SEQUENCE;

APTAMERS, NUCLEOTIDE; BASE SEQUENCE; LIGANDS; SELEX APTAMER TECHNIQUE; STEROIDS;

EID: 84886918180     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac402500n     Document Type: Article

References (29)

1. Huizenga, D. E.; Szostak, J. W. Biochemistry 1995, 34, 656-665
2. Stojanovic, M. N.; de, P. P.; Landry, D. W. J. Am. Chem. Soc. 2000, 122, 11547-11548
3. Yamamoto-Fujita, R.; Kumar, P. K. R. Anal. Chem. 2005, 77, 5460-5466
4. Chen, J.; Zhang, J.; Li, J.; Yang, H.-H.; Fu, F.; Chen, G. Biosens. Bioelectron. 2010, 25, 996-1000
5. Zuo, X.; Xiao, Y.; Plaxco, K. W. J. Am. Chem. Soc. 2009, 131, 6944-6945
6. Golub, E.; Pelossof, G.; Freeman, R.; Zhang, H.; Willner, I. Anal. Chem. 2009, 81, 9291-9298
7. Freeman, R.; Sharon, E.; Tel-Vered, R.; Willner, I. J. Am. Chem. Soc. 2009, 131, 5028-5029
8. Wen, Y.; Pei, H.; Wan, Y.; Su, Y.; Huang, Q.; Song, S.; Fan, C. Anal. Chem. 2011, 83, 7418-7423
9. Sharma, A. K.; Kent, A. D.; Heemstra, J. M. Anal. Chem. 2012, 84, 6104-6109
10. Zhang, J.; Wang, L.; Pan, D.; Song, S.; Boey, F. Y. C.; Zhang, H.; Fan, C. Small 2008, 4, 1196-1200
11. McKeague, M.; DeRosa, M. C. J. Nucleic Acids 2012, 2012, 748913
12. Uphoff, K. W.; Bell, S. D.; Ellington, A. D. Curr. Opin. Struct. Biol. 1996, 6, 281-288
13. Patel, D. J. Curr. Opin. Chem. Biol. 1997, 1, 32-46
14. Spiropulos, N. G.; Heemstra, J. M. Unpublished results.
15. Stojanovic, M. N.; de, P. P.; Landry, D. W. J. Am. Chem. Soc. 2001, 123, 4928-4931
16. Neves, M. A. D.; Reinstein, O.; Johnson, P. E. Biochemistry 2010, 49, 8478-8487
17. Yang, K.-A.; Pei, R.; Stefanovic, D.; Stojanovic, M. N. J. Am. Chem. Soc. 2012, 134, 1642-1647
18. Sharma, A. K.; Heemstra, J. M. J. Am. Chem. Soc. 2011, 133, 12426-12429
19. Brooks, T.; Keevil, C. W. Lett. Appl. Microbiol. 1997, 24, 203-206
20. Agard, N. J.; Baskin, J. M.; Prescher, J. A.; Lo, A.; Bertozzi, C. R. ACS Chem. Biol. 2006, 1, 644-648
21. Stoltenburg, R.; Reinemann, C.; Strehlitz, B. Biomol. Eng. 2007, 24, 381-403
22. Davis, J. H.; Szostak, J. W. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 11616-11621
23. Ruff, K. M.; Snyder, T. M.; Liu, D. R. J. Am. Chem. Soc. 2010, 132, 9453-9464
24. Neves, M. A.; Reinstein, O.; Saad, M.; Johnson, P. E. Biophys. Chem. 2010, 153, 9-16
25. Sletten, E. M.; Bertozzi, C. R. Angew. Chem., Int. Ed. 2009, 48, 6974-6998
26. Debets, M. F.; van, B. S. S.; Dommerholt, J.; Dirks, A. J.; Rutjes, F. P. J. T.; van, D. F. L. Acc. Chem. Res. 2011, 44, 805-815
27. Schildkraut, C.; Lifson, S. Biopolymers 1965, 3, 195-208
28. Gong, H.; Freed, K. F. Phys. Rev. Lett. 2009, 102, 057603-1-4
29. Payne, R. B.; Levell, M. J. Clin. Chem. 1968, 14, 172-178