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Volumn 1005, Issue , 2013, Pages 25-38

Multidimensional protein identification technology for direct-tissue proteomics of heart

Author keywords

Biomarker discovery; Cytoscape; Heart; MudPIT; Profiling; Proteomics; Systems biology

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; ELECTROSPRAY; HEART; MULTIDIMENSIONAL PROTEIN IDENTIFICATION TECHNOLOGY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN PROTEIN INTERACTION; PROTEOMICS; SYSTEMS BIOLOGY; TANDEM MASS SPECTROMETRY; ALGORITHM; ANIMAL; CHEMISTRY; COMPUTER PROGRAM; GENE EXPRESSION; GENE EXPRESSION PROFILING; HEART MUSCLE; HUMAN; ISOLATION AND PURIFICATION; LIQUID CHROMATOGRAPHY; METABOLISM; METHODOLOGY; PROTEIN DATABASE; PROTEIN DEGRADATION;

EID: 84886889474     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-62703-386-2_3     Document Type: Article
Times cited : (12)

References (21)
  • 1
    • 79551474552 scopus 로고    scopus 로고
    • Protein and peptide fractionation, enrichment and depletion: Tools for the complex proteome
    • Ly L, Wasinger VC (2011) Protein and peptide fractionation, enrichment and depletion: tools for the complex proteome. Proteomics 11:513-534
    • (2011) Proteomics , vol.11 , pp. 513-534
    • Ly, L.1    Wasinger, V.C.2
  • 2
    • 77956304093 scopus 로고    scopus 로고
    • Mass spectrometry in high-throughput proteomics: Ready for the big time
    • Nilsson T, Mann M, Aebersold R et al (2010) Mass spectrometry in high-throughput proteomics:ready for the big time. Nat Methods 7:681
    • (2010) Nat Methods , vol.7 , pp. 681
    • Nilsson, T.1    Mann, M.2    Aebersold, R.3
  • 3
    • 34547159253 scopus 로고    scopus 로고
    • Sample size and replication in 2D gel electrophoresis studies
    • Horgan GW (2007) Sample size and replication in 2D gel electrophoresis studies. J Proteome Res 6:2884-2887
    • (2007) J Proteome Res , vol.6 , pp. 2884-2887
    • Horgan, G.W.1
  • 4
    • 67651173106 scopus 로고    scopus 로고
    • Proteomics by mass spectrometry: Approaches, advances, and applications
    • Yates JR, Ruse CI, Nakorchevsky A (2009) Proteomics by mass spectrometry: Approaches, advances, and applications. Annu Rev BiomedEng 11:49-79
    • (2009) Annu Rev BiomedEng , vol.11 , pp. 49-79
    • Yates, J.R.1    Ruse, C.I.2    Nakorchevsky, A.3
  • 5
    • 34748866570 scopus 로고    scopus 로고
    • Twodimensional electrophoresis of membrane proteins
    • Braun RJ, Kinkl N, Beer M et al (2007) Twodimensional electrophoresis of membrane proteins. Anal Bioanal Chem 389:1033-1045
    • (2007) Anal Bioanal Chem , vol.389 , pp. 1033-1045
    • Braun, R.J.1    Kinkl, N.2    Beer, M.3
  • 6
    • 67650602911 scopus 로고    scopus 로고
    • Multidimensional protein identification technology for clinical proteomic analysis
    • Mauri PL, Scigelova M (2009) Multidimensional protein identification technology for clinical proteomic analysis. Clin Chem Lab Med 47:636-646
    • (2009) Clin Chem Lab Med , vol.47 , pp. 636-646
    • Mauri, P.L.1    Scigelova, M.2
  • 7
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng JK, McCormack AL, Yates JR (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom5:976-989
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 8
    • 79956270018 scopus 로고    scopus 로고
    • A comparative MudPIT analysis identifies different expression profiles in heart compartments
    • Comunian C, Rusconi F, De Palma A et al (2011) A comparative MudPIT analysis identifies different expression profiles in heart compartments. Proteomics 11:2320-2328
    • (2011) Proteomics , vol.11 , pp. 2320-2328
    • Comunian, C.1    Rusconi, F.2    De Palma, A.3
  • 9
    • 58249093857 scopus 로고    scopus 로고
    • A proteomic approach to the analysis of RNA degradosome composition in Escherichia coli
    • Mauri P, Deho' G (2008) A proteomic approach to the analysis of RNA degradosome composition in Escherichia coli . Methods Enzymol 447:99-117
    • (2008) Methods Enzymol , vol.447 , pp. 99-117
    • Mauri, P.1    Deho, G.2
  • 10
    • 41549117597 scopus 로고    scopus 로고
    • A quantitative analysis software tool for mass spectrometry- based proteomics
    • Park SK, Venable JD, Xu T et al (2008) A quantitative analysis software tool for mass spectrometry- based proteomics. Nat Methods 5:319-322
    • (2008) Nat Methods , vol.5 , pp. 319-322
    • Park, S.K.1    Venable, J.D.2    Xu, T.3
  • 12
    • 21744435256 scopus 로고    scopus 로고
    • Identification of proteins released by pancreatic cancer cells by multidimensional protein identification technology: A strategy for identification of novel cancer markers
    • Mauri P, Scarpa A, Nascimbeni AC et al (2005) Identification of proteins released by pancreatic cancer cells by multidimensional protein identification technology: a strategy for identification of novel cancer markers. FASEB 19:1125-1127
    • (2005) FASEB , vol.19 , pp. 1125-1127
    • Mauri, P.1    Scarpa, A.2    Nascimbeni, A.C.3
  • 13
    • 27944504787 scopus 로고    scopus 로고
    • Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach
    • Regonesi ME, Del Favero M, Basilico F et al (2006) Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach. Biochimie 88:151-161
    • (2006) Biochimie , vol.88 , pp. 151-161
    • Regonesi, M.E.1    Del Favero, M.2    Basilico, F.3
  • 14
    • 79957459998 scopus 로고    scopus 로고
    • Placental stem cells pre-treated with a hyaluronan mixed ester of butyric and retinoic acid to cure infarcted pig hearts: A multimodal study
    • Simioniuc A, Campan M, Lionetti V et al (2011) Placental stem cells pre-treated with a hyaluronan mixed ester of butyric and retinoic acid to cure infarcted pig hearts: a multimodal study. Cardiovasc Res 90:546-556
    • (2011) Cardiovasc Res , vol.90 , pp. 546-556
    • Simioniuc, A.1    Campan, M.2    Lionetti, V.3
  • 16
    • 80052720895 scopus 로고    scopus 로고
    • Published and perished? The in fluence of the searched protein database on the long-term storage of proteomics data
    • Griss J, Côté RG, Gerner C et al (2011) Published and Perished? The In fluence of the Searched Protein Database on the Long-Term Storage of Proteomics Data. Mol Cell Proteomics 10:M111.008490
    • (2011) Mol Cell Proteomics , vol.10
    • Griss, J.1    Côté, R.G.2    Gerner, C.3
  • 17
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii AI, Keller A, Kolker E et al (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 75:4646-4658
    • (2003) Anal Chem , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3
  • 18
    • 33750987637 scopus 로고    scopus 로고
    • Detecting differential and correlated protein expression in label- free shotgun proteomics
    • Zhang B, VerBerkmoes NC, Michael A et al (2006) Detecting Differential and Correlated Protein Expression in Label- Free Shotgun Proteomics. J Proteome Res 5:2909-2918
    • (2006) J Proteome Res , vol.5 , pp. 2909-2918
    • Zhang, B.1    Verberkmoes, N.C.2    Michael, A.3
  • 19
    • 58149465395 scopus 로고    scopus 로고
    • Decoy methods for assessing false positives and false discovery rates in shotgun proteomics
    • Wang G, Wu WW, Zhang Z et al (2009) Decoy Methods for Assessing False Positives and False Discovery Rates in Shotgun Proteomics. AnalChem 81:146-159
    • (2009) AnalChem , vol.81 , pp. 146-159
    • Wang, G.1    Wu, W.W.2    Zhang, Z.3
  • 20
    • 47949130351 scopus 로고    scopus 로고
    • Identifying differences in protein expression levels by spectral counting and feature selection
    • Carvalho PC, Hewel J, Barbosa VC et al (2008) Identifying differences in protein expression levels by spectral counting and feature selection. Genet Mol Res 7:342-356
    • (2008) Genet Mol Res , vol.7 , pp. 342-356
    • Carvalho, P.C.1    Hewel, J.2    Barbosa, V.C.3
  • 21
    • 48249119082 scopus 로고    scopus 로고
    • PatternLab for proteomics: A tool for differential shotgun proteomics
    • Carvalho PC, Fischer JS, Chen EI et al (2008) PatternLab for proteomics: a tool for differential shotgun proteomics. BMC Bioinformatics9:316-329
    • (2008) BMC Bioinformatics , vol.9 , pp. 316-329
    • Carvalho, P.C.1    Fischer, J.S.2    Chen, E.I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.