Anion-exchanged nanosolid support of magnetic nanoparticle in combination with PNA probes for DNA sequence analysis

Journal of Nanoparticle Research

Volumn 15, Issue 12, 2013, Pages

  Theppaleak, T ^a   Rutnakornpituk, M ^a   Wichai, U ^a   Vilaivan, T ^b   Rutnakornpituk, B ^a  

^a NARESUAN UNIVERSITY   (Thailand)

^b CHULALONGKORN UNIVERSITY   (Thailand)

Author keywords

AcpcPNA probe; DNA sequence; Instrumentation; Magnetite; Nanomedicine; Nanoparticle

Indexed keywords

DNA; GRAFTING (CHEMICAL); ION EXCHANGERS; MAGNETITE; MAGNETITE NANOPARTICLES; MASS SPECTROMETRY; MEDICAL NANOTECHNOLOGY; NANOMAGNETICS; NANOPARTICLES; PARTICLE SIZE ANALYSIS; PROBES;

ANION EXCHANGERS; DNA SEQUENCE ANALYSIS; ETHYL METHACRYLATES; INSTRUMENTATION; MAGNETIC NANO-PARTICLES; MATRIX ASSISTED LASER DESORPTION IONIZATION; PEPTIDE NUCLEIC ACID; POSITIVELY CHARGED SURFACES;

DNA SEQUENCES;

CARBOXYLIC ACID; DNA; MAGNETIC NANOPARTICLE; NUCLEOTIDE; PEPTIDE NUCLEIC ACID; POLY(ETHYL METHACRYLATE); POLY[(2 DIETHYLAMINO)ETHYL METHACRYLATE]; UNCLASSIFIED DRUG;

ADSORPTION; ANION EXCHANGE; ARTICLE; BASE MISPAIRING; DNA DETERMINATION; DNA PROBE; DNA SEQUENCE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; ONCOGENE K RAS; PARTICLE SIZE; PRIORITY JOURNAL;

EID: 84886819953     PISSN: 13880764     EISSN: 1572896X     Source Type: Journal    
DOI: 10.1007/s11051-013-2106-3     Document Type: Article

References (43)

1. Ananthanawat C, Vilaivan T, Hoven VP, Su X (2010) Comparison of DNA, aminoethylglycyl PNA and pyrrolidinyl PNA as probes for detection of DNA hybridization using surface plasmon resonance technique. Biosens Bioelectron 25:1064-1069
2. Beyaz S, Tanrisever T, Kockar H (2010) Emulsifier-free emulsion polymerization of methyl methacrylate containing hydrophilic magnetite nanoparticles. Macromol Res 18:1154-1159
3. Boontha B, Nakkuntod J, Hirankarn N, Chaumpluk P, Vilaivan T (2008) Multiplex mass spectrometric genotyping of single nucleotide polymorphisms employing pyrrolidinyl peptide nucleic acid in combination with ion-exchange capture. Anal Chem 80:8178-8186
4. Cai J, Guo J, Ji M, Yang W, Wang C, Fu S (2007) Preparation and characterization of multiresponsive polymer composite microspheres with core-shell structure. Colloid Polym Sci 285:1607-1615
5. Chiang CL, Sung CS (2006) Purification of transfection-grade plasmid DNA from bacterial cells with superparamagnetic nanoparticles. J Magn Magn Mater 302:7-13
6. Chiang CL, Sung CS, Chen CY (2006) Application of silica-magnetite nanocomposites to the isolation of ultrapure plasmid DNA from bacterial cells. J Magn Magn Mater 305:483-490
7. 4/polystyrene latexes with narrow size distribution and high magnetite content. J Polym Sci Part A 45:5285-5295
8. Davis CD, Uthus EO (2004) DNA Methylation, cancer susceptibility, and nutrient interactions. Exp Biol Med 229:988-995
9. Dong H, Huang J, Koepsel RR, Ye P, Russell AJ, Matyjaszewsk K (2011) Recyclable antibacterial magnetic nanoparticles grafted with quaternized poly(2-(dimethylamino)ethyl methacrylate) brushes. Biomacromolecules 12:1305-1311
10. Giovannangéli C, Thuong NT, Héléne C (1992) Oligodeox-ynucleotide-directed photo-induced cross-linking of HIV proviral DNA via triple-helix formation. Nucleic Acids Res 20:4275-4281
11. Guo M, Yan Y, Liu X, Yan H, Liu K, Zhang H, Cao Y (2010) Multilayer nanoparticles with a magnetite core and a polycation inner shell as pH-responsive carriers for drug delivery. Nanoscale 2:434-441
12. Herrera AP, Rodríguez M, Lugo MT, Rinaldi C (2008) Multifunctional magnetite nanoparticles coated with fluorescent thermo-responsive polymeric shells. J Mater Chem 18: 855-858
13. Hsing IM, Xu Y, Zhao W (2007) Micro- and nano-magnetic particles for applications in biosensing. Electroanalysis 19:755-768
14. Jiang C, Xu S, Zhang S, Jia L (2012) Chitosan functionalized magnetic particle-assisted detection of genetically modified soybeans based on polymerase chain reaction and capillary electrophoresis. Anal Biochem 420:20-35
15. Kanjanawarut R, Su X (2009) Colorimetric detection of DNA using unmodified metallic nanoparticles and peptide nucleic acid probes. Anal Chem 81:6122-6129
16. 4 nanoparticles as heating agents for magnetically activated drug delivery and hyperthermia. J Magn Magn Mater 320:2390-2396
17. Komiyama M, Ye S, Xingguo YY, Tomita T, Zhou JM, Aburatani H (2003) PNA for one-base differentiating protection of DNA from nuclease and its use for SNPs detection. J Am Chem Soc 125:3758-3762
18. Koripelly G, Meguellati K, Ladame S (2010) Dual sensing of hairpin and quadruplex DNA structures using multicolored peptide nucleic acid fluorescent probes. Bioconjug Chem 21:2103-2109
19. Laopa PS, Vilaivan T, Hoven VP (2013) Positively charged polymer brush-functionalized filter paper for DNA sequence determination following dot blot hybridization employing a pyrrolidinyl peptide nucleic acid probe. Analyst 138:269-277
20. Lee K, Bae KH, Lee Y, Lee SH, Ahn CH, Park TG (2010) Pluronic/ polyethylenimine shell crosslinked nanocapsules with embedded magnetite nanocrystals for magnetically triggered delivery of siRNA. Macromol Biosci 10:239-245
21. Lie'vre A, Bachet JB, Corre DL, Boige V, Landi B, Emile JF, Côté JF, Tomasic G, Penna C, Ducreux M, Rougier P, Llorca FP, Puig PL (2006) KRAS mutation status is predictive of response to cetuximab therapy in colorectal cancer. Cancer Res 66:3992-3995
22. Liu B, Bazan GC (2005) Methods for strand-specific DNA detection with cationic conjugated polymers suitable for incorporation into DNA chips and microarrays. PNAS 102:589-593
23. Liu XM, Fu SY, Xiao HM (2006) Fabrication of octahedral magnetite microcrystals. Mater Lett 60:2979-2983
24. Mansawat W, Vilaivan C, Balázs Á, Aitken DJ, Vilaivan T (2012) Pyrrolidinyl peptide nucleic acid homologues: effect of ring size on hybridization properties. Org Lett 14:1440-1443
25. Marutani E, Yamamoto S, Ninjbadgar T, Tsujii Y, Fukuda T, Takano M (2004) Surface-initiated atom transfer radical polymerization of methyl methacrylate on magnetite nanoparticles. Polymer 45:2231-2235
26. Mattes A, Seitz O (2001) Mass-spectrometric monitoring of a PNA-based ligation reaction for the multiplex detection of DNA single-nucleotide polymorphisms. Angew Chem Int Ed 40:3178-3181
27. Meerod S, Tumcharern G, Wichai U, Rutnakornpituk M (2008) Magnetite nanoparticles stabilized with polymeric bilayer of poly(ethylene glycol) methyl ether-poly(ε-caprolactone) copolymers. Polymer 49:3950-3956
28. Papaphilippou P, Christodoulou M, Marinica OM, Taculescu A, Vekas L, Chrissafis K, Christoforou TK (2012) Multiresponsive polymer conetworks capable of responding to changes in pH, temperature, and magnetic field: synthesis, characterization, and evaluation of their ability for controlled uptake and release of solutes. ACS Appl Mater Interfaces 4:2139-2147
29. Prai-in Y, Tankanya K, Rutnakornpituk B, Wichai U, Montembault V, Pascual S, Fontaine L, RutnakornpitukM(2012) Azlactone functionalization of magnetic nanoparticles using ATRP and their bioconjugation. Polymer 53:113-120
30. Rockenbauer E, Peterson K, Vogel U, Bolund L, Kølvraa S, Nielsen KV, Nexø BA (2005) SNP genotyping using microsphere-linked PNA and flow cytometric detection. Cytom Part A 64:80-86
31. Ross PL, Lee K, Belgrader P (1997) Discrimination of singlenucleotide polymorphisms in human DNA using peptide nucleic acid probes detected by MALDI-TOF mass spectrometry. Anal Chem 69:4197-4202
32. Rutnakornpituk B, Wichai U, Vilaivan T, Rutnakornpituk M (2011a) Surface-initiated atom transfer radical polymerization of poly(4-vinyl pyridine) from magnetite nanoparticle. J Nanopart Res 13:6487-6857
33. Rutnakornpituk M, Puangsin N, Theamdee P, Rutnakornpituk B, Wichai U (2011b) Poly(acrylic acid)-grafted magnetic nanoparticle for conjugation with folic acid. Polymer 52:987-995
34. Schatz P, Distler J, Berlin K, Schuster M (2006) Novel method for high throughput DNA methylation marker evaluation using PNA-probe library hybridization and MALDI-TOF detection. Nucleic Acids Res 24:e59/1-e59/8
35. Sen T, Sebastianelli A, Bruce IJ (2006) Mesoporous silica magnetite nanocomposite: fabrication and applications in magnetic bioseparations. J Am Chem Soc 128:7130-7131
36. Shinkai M (2002) Functional magnetic particles for medical application. J Biosci Bioeng 94:606-613
37. Suparpprom C, Srisuwannaket C, Sangvanich P, Vilaivan T (2005) Synthesis and oligodeoxynucleotide binding properties of pyrrolidinyl peptide nucleic acids bearing prolyl-2-aminocyclopentanecarboxylic acid (ACPC) backbones. Tetrahedron Lett 46:2833-2837
38. Svanvik N, Westman G, Wang D, Kubista M (2000) Light-up probes: thiazole orange-conjugated peptide nucleic acid for detection of target nucleic acid in homogeneous solution. Anal Biochem 281:26-35
39. Theppaleak T, Rutnakornpituk B, Wichai U, Vilaivan T, Rutnakornpituk M (2013) Magnetite nanoparticle with positively charged surface for immobilization of PNA and DNA. J Biomed Nanotechnol 9:1509-1520. doi:10.1166/jbn2013.1645
40. Vilaivan T, Srisuwannaket C (2006) Hybridization of pyrrolidinyl peptide nucleic acids and DNA: selectivity, basepairing specificity, and direction of binding. Org Lett 8:1897-1900
41. Wilhelmsson LM, Nordén B, Mukherjee K, Dulay MT, Zare RN (2002) Genetic screening using the colour change of a PNA-DNA hybrid-binding cyanine dye. Nucleic Acids Res 30:e3
42. Zhang J, Sun W, Bergman L, Rosenholm JM, Lindén M, Wu G, Xu H, Gu HC (2012) Magnetic mesoporous silica nanospheres as DNA/drug carrier. Mater Lett 67:379-382
43. Zhou L, Yuan J, Yuan W, Sui X, Wu S, Li Z, Shen D (2009) Synthesis, characterization, and controllable drug release of pH-sensitive hybrid magnetic nanoparticles. J Magn Magn Mater 321:2799-2804