Methods for strand-specific DNA detection with cationic conjugated polymers suitable for incorporation into DNA chips and microarrays

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 3, 2005, Pages 589-593

  Liu, Bin ^a   Bazan, Guillermo C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Fluorescence energy transfer; Peptide nucleic acid probe; Polyelectrolytes

Indexed keywords

BROMINE DERIVATIVE; POLY[9,9' BIS(6'' N,N,N TRIMETHYLAMMONIUM)HEXYL]FLUORENE CO ALT 4,7 (2,1,3 BENZOTHIADIAZOLE)DIBROMIDE; POLYMER; SINGLE STRANDED DNA; TRIMETHYLAMMONIUM SALT DERIVATIVE; UNCLASSIFIED DRUG;

ANALYTIC METHOD; ARTICLE; BINDING AFFINITY; CONJUGATION; DNA DETERMINATION; DNA HYBRIDIZATION; DNA MICROARRAY; DNA STRAND; FLUORESCENCE RESONANCE ENERGY TRANSFER; LIGHT; NONHUMAN; NUCLEIC ACID ANALYSIS; PEPTIDE ANALYSIS; POLYMERIZATION; PRIORITY JOURNAL; SIGNAL TRANSDUCTION; SOLID STATE; SOLUBILITY; SYNTHESIS;

DNA; DNA, SINGLE-STRANDED; FLUORENES; FLUORESCENCE RESONANCE ENERGY TRANSFER; METHODS; MOLECULAR PROBES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYAMINES; QUATERNARY AMMONIUM COMPOUNDS; THIADIAZOLES;

EID: 14144253462     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0408561102     Document Type: Article

References (33)

1. Gillespie, D. & Spiegelman, S. (1965) J. Mol. Biol. 12, 829-842.
2. Lipshutz, R. J., Fodor, S. P. A., Gingeras, T. R. & Lockart, D. J. (1999) Nat. Genet. 21, 20-24.
3. Wolcott, M. J. (1992) Clin. Microbiol. Rev. 5, 370-386.
4. Wang, J. (2000) Nucleic Acids Res. 28, 3011-3016.
5. Umek, R. M., Lin, S. W., Vielmetter, J., Terbrueggen, R. H., Irvine, B., Yu, C. J., Kayyem, J. F., Yowanto, H., Blackburn, G. F., Farkas, D. H. & Chen, Y. P. (2001) J. Mol. Diagn. 3, 74-84.
6. Schork N. J., Failin, D. & Lanchbury J. S. (2000) Clin. Genet. 58, 250-264.
7. Balakin, K. V., Korshun, V. A., Mikhalev, I. I., Maleev, G. V., Malakhov A. D., Prokhorenko, I. A. & Berlin, Yu. A. (1998) Biosens. Bioelectron. 13, 771-778.
8. Ranade, K., Chang, M. S., Ting, C. T., Pei, D., Hsiao, C. F., Olivier, M., Pesich, R., Hebert, J., Chen, Y. D., Dzau, V. J., et al. (2001) Genome Res. 11, 1262-1268.
9. Piatek, A. S., Tyagi, S., Pol, A. C., Telenti, A., Miller, L. P., Kramer, F. R. & Alland, D. (1998) Nat. Biotechnol. 16, 359-363.
10. Service, R. F. (1998) Science 282, 396-399.
11. Southern, E. M. (1996) Trends Genet. 12, 110-115.
12. Ramsay, G. (1998) Nat. Biotechnol. 16, 40-44.
13. Epstein, C. B. & Butow, R. A. (2000) Curr. Opin. Biotechnol. 11, 36-41.
14. Heeger, P. S. & Heeger, A. J. (1999) Proc. Natl. Acad. Sci. USA 96, 12219-12221.
15. Leclerc, M. (1999) Adv. Mater. 11, 1491-1498.
16. McQuade, D. T., Pullen, A. E. & Swager, T. M. (2000) Chem. Rev. (Washington, D.C.) 100, 2537-2574.
17. Chen, L., McBranch, D. W., Wang, H. L., Hegelson, R., Wudl, F. & Whitten, D. C. (1999) Proc. Natl. Acad. Sci. USA 96, 12287-12292.
18. Lakowicz, J. R. (1999) in Principles of Fluorescence Spectroscopy, (Kluwer Academic/Plenum New York), 2nd Ed.
19. Ho, H. A., Boissinot, M., Bergeron, M. G., Corbeil, G., Doré, K., Boudreau, D. & Leclerc, M. (2002) Angew. Chem. Int. Ed. 41, 1548-1551.
20. Leclerc, M., Ho, H. A. & Boissinot, M. (2002) World Patent WO 02/081735 A2, 1-46.
21. Nilsson, P. K. R. & Inganäs, O. (2003) Nat. Mater. 2, 419-424.
22. Dore, K., Dubus, S., Ho, H. A., Levesque, I., Brunette, M., Corbeil, G., Boissinot, M., Boivin, G., Bergeron, M. G., Boudreau, D. & Leclerc, M. (2004) J. Am. Chem. Soc. 126, 4240-4244.
23. Kabanov, A. V., Feigner, P. & Seymour, L. W., eds. (1998) Self-Assembling Complexes for Gene Delivery: From Laborotary to Clinical Trial (Wiley, Chichester, U.K.).
24. Gaylord, B. S., Heeger, A. J. & Bazan G. C. (2002) Proc. Natl. Acad. Sci. USA 99, 10954-10957.
25. Gaylord, B. S., Heeger A. J. & Bazan G. C. (2003) J. Am. Chem. Soc. 125, 896-900.
26. Wang, S. & Bazan, G. C. (2003) Adv. Mater. 15, 1425-1428.
27. Liu, B., Wang, S., Bazan, G. C. & Mikhailovsky, A. (2003) J. Am. Chem. Soc. 125, 13306-13307.
28. Liu, B. & Bazan, G. C. (2004) J. Am. Chem. Soc. 126, 1942-1943.
29. Liu, B. & Bazan, G. C. (2004) Chem. Mater. 16, 4467-4476.
30. Liu, B., Gaylord, B. S., Wang, S. & Bazan G. C. (2003) J. Am. Chem. Soc., 125, 6705-6714.
31. Stevens, M. A., Silva, C., Russell, D. M. & Friend, R. H. (2001) Phys. Rev. B 63, 165213-1-165213-18.
32. Huang, F., Hou, L. T., Wu, H. B., Wang, X. H., Shen, H. L., Cao, W., Yang, W. & Cao, Y. (2004) J. Am. Chem. Soc. 126, 9845-9853.
33. Beier, M. & Hoheisel, J. D. (1999) Nucleic Acids Res. 27, 1970-1977.