-
1
-
-
79961173182
-
Direct reprogramming of adult human fibroblasts to functional neurons under defined conditions
-
R. Ambasudhan, M. Talantova, R. Coleman, X. Yuan, S. Zhu, S.A. Lipton, and S. Ding Direct reprogramming of adult human fibroblasts to functional neurons under defined conditions Cell Stem Cell 9 2011 113 118
-
(2011)
Cell Stem Cell
, vol.9
, pp. 113-118
-
-
Ambasudhan, R.1
Talantova, M.2
Coleman, R.3
Yuan, X.4
Zhu, S.5
Lipton, S.A.6
Ding, S.7
-
2
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
T.L. Bailey, M. Boden, F.A. Buske, M. Frith, C.E. Grant, L. Clementi, J. Ren, W.W. Li, and W.S. Noble MEME SUITE: tools for motif discovery and searching Nucleic Acids Res. 37 Web Server issue 2009 W202 W208
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.WEB SERVER ISSUE
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
3
-
-
0030478206
-
X-MyT1, a Xenopus C2HC-type zinc finger protein with a regulatory function in neuronal differentiation
-
E.J. Bellefroid, C. Bourguignon, T. Hollemann, Q. Ma, D.J. Anderson, C. Kintner, and T. Pieler X-MyT1, a Xenopus C2HC-type zinc finger protein with a regulatory function in neuronal differentiation Cell 87 1996 1191 1202
-
(1996)
Cell
, vol.87
, pp. 1191-1202
-
-
Bellefroid, E.J.1
Bourguignon, C.2
Hollemann, T.3
Ma, Q.4
Anderson, D.J.5
Kintner, C.6
Pieler, T.7
-
4
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
B.E. Bernstein, T.S. Mikkelsen, X. Xie, M. Kamal, D.J. Huebert, J. Cuff, B. Fry, A. Meissner, M. Wernig, and K. Plath A bivalent chromatin structure marks key developmental genes in embryonic stem cells Cell 125 2006 315 326
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
Cuff, J.6
Fry, B.7
Meissner, A.8
Wernig, M.9
Plath, K.10
-
5
-
-
0036631456
-
Proneural genes and the specification of neural cell types
-
N. Bertrand, D.S. Castro, and F. Guillemot Proneural genes and the specification of neural cell types Nat. Rev. Neurosci. 3 2002 517 530
-
(2002)
Nat. Rev. Neurosci.
, vol.3
, pp. 517-530
-
-
Bertrand, N.1
Castro, D.S.2
Guillemot, F.3
-
6
-
-
38149129457
-
A transcriptome database for astrocytes, neurons, and oligodendrocytes: A new resource for understanding brain development and function
-
J.D. Cahoy, B. Emery, A. Kaushal, L.C. Foo, J.L. Zamanian, K.S. Christopherson, Y. Xing, J.L. Lubischer, P.A. Krieg, and S.A. Krupenko A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function J. Neurosci. 28 2008 264 278
-
(2008)
J. Neurosci.
, vol.28
, pp. 264-278
-
-
Cahoy, J.D.1
Emery, B.2
Kaushal, A.3
Foo, L.C.4
Zamanian, J.L.5
Christopherson, K.S.6
Xing, Y.7
Lubischer, J.L.8
Krieg, P.A.9
Krupenko, S.A.10
-
7
-
-
82855170864
-
Old and new functions of proneural factors revealed by the genome-wide characterization of their transcriptional targets
-
D.S. Castro, and F. Guillemot Old and new functions of proneural factors revealed by the genome-wide characterization of their transcriptional targets Cell Cycle 10 2011 4026 4031
-
(2011)
Cell Cycle
, vol.10
, pp. 4026-4031
-
-
Castro, D.S.1
Guillemot, F.2
-
8
-
-
77951935861
-
Genome-wide MyoD binding in skeletal muscle cells: A potential for broad cellular reprogramming
-
Y. Cao, Z. Yao, D. Sarkar, M. Lawrence, G.J. Sanchez, M.H. Parker, K.L. MacQuarrie, J. Davison, M.T. Morgan, and W.L. Ruzzo Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming Dev. Cell 18 2010 662 674
-
(2010)
Dev. Cell
, vol.18
, pp. 662-674
-
-
Cao, Y.1
Yao, Z.2
Sarkar, D.3
Lawrence, M.4
Sanchez, G.J.5
Parker, M.H.6
Macquarrie, K.L.7
Davison, J.8
Morgan, M.T.9
Ruzzo, W.L.10
-
9
-
-
24944484633
-
Niche-independent symmetrical self-renewal of a mammalian tissue stem cell
-
L. Conti, S.M. Pollard, T. Gorba, E. Reitano, M. Toselli, G. Biella, Y. Sun, S. Sanzone, Q.L. Ying, E. Cattaneo, and A. Smith Niche-independent symmetrical self-renewal of a mammalian tissue stem cell PLoS Biol. 3 2005 e283
-
(2005)
PLoS Biol.
, vol.3
, pp. 283
-
-
Conti, L.1
Pollard, S.M.2
Gorba, T.3
Reitano, E.4
Toselli, M.5
Biella, G.6
Sun, Y.7
Sanzone, S.8
Ying, Q.L.9
Cattaneo, E.10
Smith, A.11
-
10
-
-
84875666878
-
POU-III transcription factors (Brn1, Brn2, and Oct6) influence neurogenesis, molecular identity, and migratory destination of upper-layer cells of the cerebral cortex
-
10.1093/cercor/bhs252 Published online August 14, 2012
-
M.H. Dominguez, A.E. Ayoub, and P. Rakic POU-III transcription factors (Brn1, Brn2, and Oct6) influence neurogenesis, molecular identity, and migratory destination of upper-layer cells of the cerebral cortex Cereb. Cortex 2012 10.1093/cercor/bhs252 Published online August 14, 2012
-
(2012)
Cereb. Cortex
-
-
Dominguez, M.H.1
Ayoub, A.E.2
Rakic, P.3
-
11
-
-
84857707318
-
ChromHMM: Automating chromatin-state discovery and characterization
-
J. Ernst, and M. Kellis ChromHMM: automating chromatin-state discovery and characterization Nat. Methods 9 2012 215 216
-
(2012)
Nat. Methods
, vol.9
, pp. 215-216
-
-
Ernst, J.1
Kellis, M.2
-
12
-
-
84859853893
-
Genetic and epigenetic determinants of neurogenesis and myogenesis
-
A.P. Fong, Z. Yao, J.W. Zhong, Y. Cao, W.L. Ruzzo, R.C. Gentleman, and S.J. Tapscott Genetic and epigenetic determinants of neurogenesis and myogenesis Dev. Cell 22 2012 721 735
-
(2012)
Dev. Cell
, vol.22
, pp. 721-735
-
-
Fong, A.P.1
Yao, Z.2
Zhong, J.W.3
Cao, Y.4
Ruzzo, W.L.5
Gentleman, R.C.6
Tapscott, S.J.7
-
13
-
-
0031034468
-
Two domains of MyoD mediate transcriptional activation of genes in repressive chromatin: A mechanism for lineage determination in myogenesis
-
A.N. Gerber, T.R. Klesert, D.A. Bergstrom, and S.J. Tapscott Two domains of MyoD mediate transcriptional activation of genes in repressive chromatin: a mechanism for lineage determination in myogenesis Genes Dev. 11 1997 436 450
-
(1997)
Genes Dev.
, vol.11
, pp. 436-450
-
-
Gerber, A.N.1
Klesert, T.R.2
Bergstrom, D.A.3
Tapscott, S.J.4
-
14
-
-
34250369627
-
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
-
P.G. Giresi, J. Kim, R.M. McDaniell, V.R. Iyer, and J.D. Lieb FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin Genome Res. 17 2007 877 885
-
(2007)
Genome Res.
, vol.17
, pp. 877-885
-
-
Giresi, P.G.1
Kim, J.2
McDaniell, R.M.3
Iyer, V.R.4
Lieb, J.D.5
-
15
-
-
71449125977
-
Forcing cells to change lineages
-
T. Graf, and T. Enver Forcing cells to change lineages Nature 462 2009 587 594
-
(2009)
Nature
, vol.462
, pp. 587-594
-
-
Graf, T.1
Enver, T.2
-
16
-
-
0027420712
-
Mammalian achaete-scute homolog 1 is required for the early development of olfactory and autonomic neurons
-
F. Guillemot, L.C. Lo, J.E. Johnson, A. Auerbach, D.J. Anderson, and A.L. Joyner Mammalian achaete-scute homolog 1 is required for the early development of olfactory and autonomic neurons Cell 75 1993 463 476
-
(1993)
Cell
, vol.75
, pp. 463-476
-
-
Guillemot, F.1
Lo, L.C.2
Johnson, J.E.3
Auerbach, A.4
Anderson, D.J.5
Joyner, A.L.6
-
17
-
-
79960637387
-
Induction of functional hepatocyte-like cells from mouse fibroblasts by defined factors
-
P. Huang, Z. He, S. Ji, H. Sun, D. Xiang, C. Liu, Y. Hu, X. Wang, and L. Hui Induction of functional hepatocyte-like cells from mouse fibroblasts by defined factors Nature 475 2011 386 389
-
(2011)
Nature
, vol.475
, pp. 386-389
-
-
Huang, P.1
He, Z.2
Ji, S.3
Sun, H.4
Xiang, D.5
Liu, C.6
Hu, Y.7
Wang, X.8
Hui, L.9
-
18
-
-
77955321344
-
Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors
-
M. Ieda, J.D. Fu, P. Delgado-Olguin, V. Vedantham, Y. Hayashi, B.G. Bruneau, and D. Srivastava Direct reprogramming of fibroblasts into functional cardiomyocytes by defined factors Cell 142 2010 375 386
-
(2010)
Cell
, vol.142
, pp. 375-386
-
-
Ieda, M.1
Fu, J.D.2
Delgado-Olguin, P.3
Vedantham, V.4
Hayashi, Y.5
Bruneau, B.G.6
Srivastava, D.7
-
19
-
-
39149130361
-
Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming
-
R. Jaenisch, and R. Young Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming Cell 132 2008 567 582
-
(2008)
Cell
, vol.132
, pp. 567-582
-
-
Jaenisch, R.1
Young, R.2
-
20
-
-
0026468183
-
Novel member of the zinc finger superfamily: A C2-HC finger that recognizes a glia-specific gene
-
J.G. Kim, and L.D. Hudson Novel member of the zinc finger superfamily: A C2-HC finger that recognizes a glia-specific gene Mol. Cell. Biol. 12 1992 5632 5639
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 5632-5639
-
-
Kim, J.G.1
Hudson, L.D.2
-
21
-
-
84872130436
-
Structural and functional analysis of JMJD2D reveals molecular basis for site-specific demethylation among JMJD2 demethylases
-
S. Krishnan, and R.C. Trievel Structural and functional analysis of JMJD2D reveals molecular basis for site-specific demethylation among JMJD2 demethylases Structure 21 2013 98 108
-
(2013)
Structure
, vol.21
, pp. 98-108
-
-
Krishnan, S.1
Trievel, R.C.2
-
22
-
-
0026005061
-
Mammalian achaete-scute homolog 1 is transiently expressed by spatially restricted subsets of early neuroepithelial and neural crest cells
-
L.C. Lo, J.E. Johnson, C.W. Wuenschell, T. Saito, and D.J. Anderson Mammalian achaete-scute homolog 1 is transiently expressed by spatially restricted subsets of early neuroepithelial and neural crest cells Genes Dev. 5 1991 1524 1537
-
(1991)
Genes Dev.
, vol.5
, pp. 1524-1537
-
-
Lo, L.C.1
Johnson, J.E.2
Wuenschell, C.W.3
Saito, T.4
Anderson, D.J.5
-
23
-
-
0028215362
-
Crystal structure of MyoD bHLH domain-DNA complex: Perspectives on DNA recognition and implications for transcriptional activation
-
P.C. Ma, M.A. Rould, H. Weintraub, and C.O. Pabo Crystal structure of MyoD bHLH domain-DNA complex: perspectives on DNA recognition and implications for transcriptional activation Cell 77 1994 451 459
-
(1994)
Cell
, vol.77
, pp. 451-459
-
-
Ma, P.C.1
Rould, M.A.2
Weintraub, H.3
Pabo, C.O.4
-
24
-
-
0033166408
-
Neurogenin1 and neurogenin2 control two distinct waves of neurogenesis in developing dorsal root ganglia
-
Q. Ma, C. Fode, F. Guillemot, and D.J. Anderson Neurogenin1 and neurogenin2 control two distinct waves of neurogenesis in developing dorsal root ganglia Genes Dev. 13 1999 1717 1728
-
(1999)
Genes Dev.
, vol.13
, pp. 1717-1728
-
-
Ma, Q.1
Fode, C.2
Guillemot, F.3
Anderson, D.J.4
-
25
-
-
80053900492
-
Direct lineage conversion of terminally differentiated hepatocytes to functional neurons
-
S. Marro, Z.P. Pang, N. Yang, M.C. Tsai, K. Qu, H.Y. Chang, T.C. Südhof, and M. Wernig Direct lineage conversion of terminally differentiated hepatocytes to functional neurons Cell Stem Cell 9 2011 374 382
-
(2011)
Cell Stem Cell
, vol.9
, pp. 374-382
-
-
Marro, S.1
Pang, Z.P.2
Yang, N.3
Tsai, M.C.4
Qu, K.5
Chang, H.Y.6
Südhof, T.C.7
Wernig, M.8
-
26
-
-
1842507209
-
Distinct domains within Mash1 and Math1 are required for function in neuronal differentiation versus neuronal cell-type specification
-
Y. Nakada, T.L. Hunsaker, R.M. Henke, and J.E. Johnson Distinct domains within Mash1 and Math1 are required for function in neuronal differentiation versus neuronal cell-type specification Development 131 2004 1319 1330
-
(2004)
Development
, vol.131
, pp. 1319-1330
-
-
Nakada, Y.1
Hunsaker, T.L.2
Henke, R.M.3
Johnson, J.E.4
-
27
-
-
79960854285
-
Induction of human neuronal cells by defined transcription factors
-
Z.P. Pang, N. Yang, T. Vierbuchen, A. Ostermeier, D.R. Fuentes, T.Q. Yang, A. Citri, V. Sebastiano, S. Marro, T.C. Südhof, and M. Wernig Induction of human neuronal cells by defined transcription factors Nature 476 2011 220 223
-
(2011)
Nature
, vol.476
, pp. 220-223
-
-
Pang, Z.P.1
Yang, N.2
Vierbuchen, T.3
Ostermeier, A.4
Fuentes, D.R.5
Yang, T.Q.6
Citri, A.7
Sebastiano, V.8
Marro, S.9
Südhof, T.C.10
Wernig, M.11
-
28
-
-
79961131135
-
Directed conversion of Alzheimer's disease patient skin fibroblasts into functional neurons
-
L. Qiang, R. Fujita, T. Yamashita, S. Angulo, H. Rhinn, D. Rhee, C. Doege, L. Chau, L. Aubry, and W.B. Vanti Directed conversion of Alzheimer's disease patient skin fibroblasts into functional neurons Cell 146 2011 359 371
-
(2011)
Cell
, vol.146
, pp. 359-371
-
-
Qiang, L.1
Fujita, R.2
Yamashita, T.3
Angulo, S.4
Rhinn, H.5
Rhee, D.6
Doege, C.7
Chau, L.8
Aubry, L.9
Vanti, W.B.10
-
29
-
-
33846025127
-
Dynamic regulation of histone lysine methylation by demethylases
-
Y. Shi, and J.R. Whetstine Dynamic regulation of histone lysine methylation by demethylases Mol. Cell 25 2007 1 14
-
(2007)
Mol. Cell
, vol.25
, pp. 1-14
-
-
Shi, Y.1
Whetstine, J.R.2
-
30
-
-
84870058502
-
Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome
-
A. Soufi, G. Donahue, and K.S. Zaret Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome Cell 151 2012 994 1004
-
(2012)
Cell
, vol.151
, pp. 994-1004
-
-
Soufi, A.1
Donahue, G.2
Zaret, K.S.3
-
31
-
-
0037099207
-
Brn-1 and Brn-2 share crucial roles in the production and positioning of mouse neocortical neurons
-
Y. Sugitani, S. Nakai, O. Minowa, M. Nishi, K. Jishage, H. Kawano, K. Mori, M. Ogawa, and T. Noda Brn-1 and Brn-2 share crucial roles in the production and positioning of mouse neocortical neurons Genes Dev. 16 2002 1760 1765
-
(2002)
Genes Dev.
, vol.16
, pp. 1760-1765
-
-
Sugitani, Y.1
Nakai, S.2
Minowa, O.3
Nishi, M.4
Jishage, K.5
Kawano, H.6
Mori, K.7
Ogawa, M.8
Noda, T.9
-
32
-
-
84866780162
-
Molecular roadblocks for cellular reprogramming
-
T. Vierbuchen, and M. Wernig Molecular roadblocks for cellular reprogramming Mol. Cell 47 2012 827 838
-
(2012)
Mol. Cell
, vol.47
, pp. 827-838
-
-
Vierbuchen, T.1
Wernig, M.2
-
33
-
-
77649162059
-
Direct conversion of fibroblasts to functional neurons by defined factors
-
T. Vierbuchen, A. Ostermeier, Z.P. Pang, Y. Kokubu, T.C. Südhof, and M. Wernig Direct conversion of fibroblasts to functional neurons by defined factors Nature 463 2010 1035 1041
-
(2010)
Nature
, vol.463
, pp. 1035-1041
-
-
Vierbuchen, T.1
Ostermeier, A.2
Pang, Z.P.3
Kokubu, Y.4
Südhof, T.C.5
Wernig, M.6
-
34
-
-
80054726357
-
Direct lineage conversions: Unnatural but useful?
-
T. Vierbuchen, and M. Wernig Direct lineage conversions: unnatural but useful? Nat. Biotechnol. 29 2011 892 907
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 892-907
-
-
Vierbuchen, T.1
Wernig, M.2
-
35
-
-
0030970877
-
Png-1, a nervous system-specific zinc finger gene, identifies regions containing postmitotic neurons during mammalian embryonic development
-
J.A. Weiner, and J. Chun Png-1, a nervous system-specific zinc finger gene, identifies regions containing postmitotic neurons during mammalian embryonic development J. Comp. Neurol. 381 1997 130 142
-
(1997)
J. Comp. Neurol.
, vol.381
, pp. 130-142
-
-
Weiner, J.A.1
Chun, J.2
-
36
-
-
33646124469
-
Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases
-
J.R. Whetstine, A. Nottke, F. Lan, M. Huarte, S. Smolikov, Z. Chen, E. Spooner, E. Li, G. Zhang, M. Colaiacovo, and Y. Shi Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases Cell 125 2006 467 481
-
(2006)
Cell
, vol.125
, pp. 467-481
-
-
Whetstine, J.R.1
Nottke, A.2
Lan, F.3
Huarte, M.4
Smolikov, S.5
Chen, Z.6
Spooner, E.7
Li, E.8
Zhang, G.9
Colaiacovo, M.10
Shi, Y.11
-
37
-
-
80051684096
-
MicroRNA-mediated conversion of human fibroblasts to neurons
-
A.S. Yoo, A.X. Sun, L. Li, A. Shcheglovitov, T. Portmann, Y. Li, C. Lee-Messer, R.E. Dolmetsch, R.W. Tsien, and G.R. Crabtree MicroRNA-mediated conversion of human fibroblasts to neurons Nature 476 2011 228 231
-
(2011)
Nature
, vol.476
, pp. 228-231
-
-
Yoo, A.S.1
Sun, A.X.2
Li, L.3
Shcheglovitov, A.4
Portmann, T.5
Li, Y.6
Lee-Messer, C.7
Dolmetsch, R.E.8
Tsien, R.W.9
Crabtree, G.R.10
-
38
-
-
80455144479
-
Pioneer transcription factors: Establishing competence for gene expression
-
K.S. Zaret, and J.S. Carroll Pioneer transcription factors: establishing competence for gene expression Genes Dev. 25 2011 2227 2241
-
(2011)
Genes Dev.
, vol.25
, pp. 2227-2241
-
-
Zaret, K.S.1
Carroll, J.S.2
-
39
-
-
80051564877
-
Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions
-
G.E. Zentner, P.J. Tesar, and P.C. Scacheri Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions Genome Res. 21 2011 1273 1283
-
(2011)
Genome Res.
, vol.21
, pp. 1273-1283
-
-
Zentner, G.E.1
Tesar, P.J.2
Scacheri, P.C.3
-
40
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Y. Zhang, T. Liu, C.A. Meyer, J. Eeckhoute, D.S. Johnson, B.E. Bernstein, C. Nusbaum, R.M. Myers, M. Brown, W. Li, and X.S. Liu Model-based analysis of ChIP-Seq (MACS) Genome Biol. 9 2008 R137
-
(2008)
Genome Biol.
, vol.9
, pp. 137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
41
-
-
32344453096
-
Efficient method to generate single-copy transgenic mice by site-specific integration in embryonic stem cells
-
C. Beard, K. Hochedlinger, K. Plath, A. Wutz, and R. Jaenisch Efficient method to generate single-copy transgenic mice by site-specific integration in embryonic stem cells Genesis 44 2006 23 28
-
(2006)
Genesis
, vol.44
, pp. 23-28
-
-
Beard, C.1
Hochedlinger, K.2
Plath, K.3
Wutz, A.4
Jaenisch, R.5
-
42
-
-
0031710033
-
A third-generation lentivirus vector with a conditional packaging system
-
T. Dull, R. Zufferey, M. Kelly, R.J. Mandel, M. Nguyen, D. Trono, and L. Naldini A third-generation lentivirus vector with a conditional packaging system J. Virol. 72 1998 8463 8471
-
(1998)
J. Virol.
, vol.72
, pp. 8463-8471
-
-
Dull, T.1
Zufferey, R.2
Kelly, M.3
Mandel, R.J.4
Nguyen, M.5
Trono, D.6
Naldini, L.7
-
43
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
W. Huang, B.T. Sherman, and R.A. Lempicki Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Nucleic Acids Res. 37 2009 1 13
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
44
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
W. Huang, B.T. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nat. Protoc. 4 2009 44 57
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
45
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
B. Langmead, C. Trapnell, M. Pop, and S.L. Salzberg Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biol. 10 2009 R25
-
(2009)
Genome Biol.
, vol.10
, pp. 25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
46
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
J.Z. Levin, M. Yassour, X. Adiconis, C. Nusbaum, D.A. Thompson, N. Friedman, A. Gnirke, and A. Regev Comprehensive comparative analysis of strand-specific RNA sequencing methods Nat. Methods 7 2010 709 715
-
(2010)
Nat. Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
Yassour, M.2
Adiconis, X.3
Nusbaum, C.4
Thompson, D.A.5
Friedman, N.6
Gnirke, A.7
Regev, A.8
-
47
-
-
80054729999
-
Using ChIP-seq technology to generate high-resolution profiles of histone modifications
-
H. O'Geen, L. Echipare, and P.J. Farnham Using ChIP-seq technology to generate high-resolution profiles of histone modifications Methods Mol. Biol. 791 2011 265 286
-
(2011)
Methods Mol. Biol.
, vol.791
, pp. 265-286
-
-
O'Geen, H.1
Echipare, L.2
Farnham, P.J.3
-
48
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
C. Trapnell, L. Pachter, and S.L. Salzberg TopHat: discovering splice junctions with RNA-Seq Bioinformatics 25 2009 1105 1111
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
49
-
-
84861429489
-
Cell-type-specific control of enhancer activity by H3K9 trimethylation
-
Y. Zhu, D. van Essen, and S. Saccani Cell-type-specific control of enhancer activity by H3K9 trimethylation Mol. Cell 46 2012 408 423
-
(2012)
Mol. Cell
, vol.46
, pp. 408-423
-
-
Zhu, Y.1
Van Essen, D.2
Saccani, S.3
|