Genome architecture changes and major gene variations of Andrias davidianus ranavirus (ADRV)

Veterinary Research

Volumn 44, Issue 1, 2013, Pages

  Chen, Zhongyuan ^a   Gui, Jianfang ^a   Gao, Xiaochan ^a   Pei, Chao ^a   Hong, Yijiang ^b   Zhang, Qiya ^a  

^a INSTITUTE OF HYDROBIOLOGY   (China)

^b NANCHANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT DIARRHEAL ROTAVIRUS; AMBYSTOMA TIGRINUM STEBBENSI VIRUS; AMPHIBIA; ANDRIAS DAVIDIANUS; ANURA; EUKARYOTA; IRIDOVIRUS; RANAVIRUS; SALAMANDROIDEA;

AMINO ACID SEQUENCE; ANIMAL; ANIMAL DISEASE; ARTICLE; CHEMISTRY; DNA SEQUENCE; DNA VIRUS INFECTION; GENETICS; IRIDOVIRUS; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE ALIGNMENT; URODELA; VIROLOGY; VIRUS GENOME;

AMINO ACID SEQUENCE; ANIMALS; DNA VIRUS INFECTIONS; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RANAVIRUS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; URODELA;

EID: 84886672543     PISSN: 09284249     EISSN: 12979716     Source Type: Journal    
DOI: 10.1186/1297-9716-44-101     Document Type: Article

References (58)

1. Ecopathology of ranaviruses infecting amphibians. Miller D, Gray M, Storfer A, Viruses 2012 3 2351 2373
2. Molecular basis and genetic improvement of economically important traits in aquaculture animals. Gui JF, Zhu ZY, Chin Sci Bull 2012 57 1751 1760 10.1007/s11434-012-5213-0
3. Zhang QY, Gui JF, Atlas of aquatic viruses and viral diseases Beijing: Science Press 2012
4. Ranaviruses (family Iridoviridae): emerging cold-blooded killers. Chinchar VG, Arch Virol 2002 147 447 470 10.1007/s007050200000 11958449 (Pubitemid 34179622)
5. Iridovirus infections in finfish-critical review with emphasis on ranaviruses. Whittington RJ, Becker JA, Dennis MM, J Fish Dis 2010 33 95 122 10.1111/j.1365-2761.2009.01110.x 20050967
6. The molecular biology of frog virus 3 and other iridoviruses infecting cold-blooded vertebrates. Chinchar VG, Yu KH, Jancovich JK, Viruses 2011 3 1959 1985 10.3390/v3101959 22069524
7. Pathogenicity of frog virus 3-like virus in red-eared slider turtles (Trachemys scripta elegans) at two environmental temperatures. Allender MC, Mitchell MA, Torres T, Sekowska J, Driskell EA, J Comp Pathol 2013 149 356 367 10.1016/j.jcpa.2013.01.007 23582975
8. Family Iridoviridae. Jancovich JK, Chinchar VG, Hyatt A, Miyazaki T, Williams T, Zhang QY, Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses SanDiego, CA, USA: Elsevier, King AMQ, Lefkowitz E, Adams MJ, Carstens EB, 2011 193 210
9. The isolation and properties of viruses from Rana pipiens: their possible relationship to the renal adenocarcinoma of the leopard frog. Granoff A, Came PE, Rafferty KA, Ann N Y Acad Sci 1965 126 237 255 5220161
10. Frog virus 3 infection, cultured American bullfrogs. Miller DL, Rajeev S, Gray MJ, Baldwin CA, Emerg Infect Dis 2007 13 342 343 10.3201/eid1302.061073 17479910 (Pubitemid 46193190)
11. Isolation of a lethal virus from the endangered tiger salamander, Ambystoma tigrinum stebbinsi. Jancovich JK, Davidson EW, Morado JF, Jacobs BL, Collins JP, Dis Aquat Organ 1997 31 161 167 (Pubitemid 28084526)
12. Spatial and temporal patterns of Ambystoma tigrinum virus (ATV) prevalence in tiger salamanders Ambystoma tigrinum nebulosum. Greer AL, Brunner JL, Collins JP, Dis Aquat Organ 2009 85 1 6 19593927
13. Preliminary studies on virus isolation and cell infection from disease frog Rana grylio. Zhang QY, Li ZQ, Jiang YL, Liang SC, Gui JF, Acta Hydrobioliogica Sinica 1996 20 390 392 (in Chinese)
14. Characterization of an iridovirus from the cultured pig frog Rana grylio with lethal syndrome. Zhang QY, Xiao F, Li ZQ, Gui JF, Mao J, Chinchar VG, Dis Aquat Organ 2001 48 27 36 11843137 (Pubitemid 34115205)
15. Sequence analysis of the complete genome of an iridovirus isolated from the tiger frog. He JG, Lü L, Deng M, He HH, Weng SP, Wang XH, Zhou SY, Long QX, Wang XZ, Chan SM, Virology 2001 292 185 197
16. Pathology, isolation and molecular characterisation of a ranavirus from the common midwife toad Alytes obstetricans on the Iberian Peninsula. Balseiro A, Dalton KP, del Cerro A, Marquez I, Cunningham AA, Parra F, Prieto JM, Casais R, Dis Aquat Organ 2009 84 95 104 19476279
17. Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes. Eaton HE, Metcalf J, Penny E, Tcherepanov V, Upton C, Brunetti CR, Virol J 2007 4 11 10.1186/1743-422X-4-11 17239238 (Pubitemid 46201629)
18. Evidence for multiple recent host species shifts among the Ranaviruses (family Iridoviridae). Jancovich JK, Bremont M, Touchman JW, Jacobs BL, J Virol 2010 84 2636 2647 10.1128/JVI.01991-09 20042506
19. Sequencing and analysis of the complete genome of Rana grylio virus (RGV). Lei XY, Ou T, Zhu RL, Zhang QY, Arch Virol 2012 157 1559 1564 10.1007/s00705-012-1316-9 22543635
20. The genome sequence of the emerging common midwife toad virus identifies an evolutionary intermediate within ranaviruses. Mavian C, López-Bueno A, Balseiro A, Casais R, Alcamí A, Alejo A, J Virol 2012 86 3617 3625 10.1128/JVI.07108-11 22301140
21. Complete sequence determination of a novel reptile iridovirus isolated from soft-shelled turtle and evolutionary analysis of Iridoviridae. Huang YH, Huang XH, Liu H, Gong J, Ouyang ZL, Cui HC, Cao JH, Zhao YT, Wang XJ, Jiang YL, Qin QW, BMC Genomics 2009 10 224 10.1186/1471-2164-10-224 19439104
22. Iridovirus infection in Chinese giant salamanders, China, 2010. Dong W, Zhang X, Yang C, An J, Qin J, Song F, Zeng W, Emerg Infect Dis 2011 17 2388 2389 10.3201/eid1712.101758 22172343
23. First report of a ranavirus associated with morbidity and mortality in farmed Chinese giant salamanders (Andrias davidianus). Geng Y, Wang KY, Zhou ZY, Li CW, Wang J, He M, Yin ZQ, Lai WM, J Comp Pathol 2011 145 95 102 10.1016/j.jcpa.2010.11.012 21256507
24. Emerging infectious diseases of wildlife-threats to biodiversity and human health. Daszak P, Cunningham AA, Hyatt AD, Science 2000 287 443 449 10.1126/science.287.5452.443 10642539
25. Family Iridoviridae: poor viral relations no longer. Chinchar VG, Hyatt A, Miyazaki T, Williams T, Curr Top Microbiol Immunol 2009 328 123 170 10.1007/978-3-540-68618-7-4 19216437
26. Host range, host specificity and hypothesized host shift events among viruses of lower vertebrates. Bandín I, Dopazo CP, Vet Res 2011 42 67 10.1186/1297-9716-42-67 21592358
27. Viruses in reptiles. Ariel E, Vet Res 2011 42 100 10.1186/1297-9716-42- 100 21933449
28. Development and characterization of monoclonal antibodies to sping viraemia of carp virus. Chen ZY, Liu H, Li ZQ, Zhang QY, Vet Immunol Immunopathol 2008 123 266 276 10.1016/j.vetimm.2008.02.011 18378003
29. Isolation and characterization of Scophthalmus maximus rhabdovirus. Zhang QY, Tao JJ, Gui L, Zhou GZ, Ruan HM, Li ZQ, Gui JF, Dis Aquat Organ 2007 74 95 105 17432038 (Pubitemid 46447405)
30. Electron microscopic examination of viromatrix of Rana grylio virus in a fish cell line. Huang XH, Huang YH, Yuan XP, Zhang QY, J Virol Methods 2006 133 117 123 10.1016/j.jviromet.2005.10.029 16310866
31. Viral envelope protein 53R gene highly specific silencing and iridovirus resistance in fish cells by amiRNA. Kim YS, Ke F, Lei XY, Zhu R, Zhang QY, PLoS One 2010 5 10308 10.1371/journal.pone.0010308 20428238
32. Molecular characterization of three Rana grylio virus (RGV) isolates and Paralichthys olivaceus lymphocystis disease virus (LCDV-C) in iridoviruses. Zhang QY, Zhao Z, Xiao F, Li ZQ, Gui JF, Aquaculture 2006 251 1 10 10.1016/j.aquaculture.2005.05.012 (Pubitemid 41820939)
33. The antiviral defense mechanisms in mandarin fish induced by DNA vaccination against a rhabdovirus. Chen ZY, Lei XY, Zhang QY, Vet Microbiol 2012 157 264 275 10.1016/j.vetmic.2011.12.025 22243898
34. Complete genome sequence of lymphocystis disease virus isolated from China. Zhang QY, Xiao F, Xie J, Li ZQ, Gui JF, J Virol 2004 78 6982 6994 10.1128/JVI.78.13.6982-6994.2004 15194775 (Pubitemid 38781537)
35. Gene finding in viral genomes [ http://linux1.softberry.com/berry.phtml ]
36. ORF Finder (Open Reading Frame Finder) http://www.ncbi.nlm.nih.gov/gorf/ gorf.html
37. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. Krogh A, Larsson B, von Heijne G, Sonnhammer EL, J Mol Biol 2001 305 567 580 10.1006/jmbi.2000.4315 11152613 (Pubitemid 33032862)
38. The Jpred 3 secondary structure prediction server. Cole C, Barber JD, Barton GJ, Nucleic Acids Res 2008 36 197 W201 10.1093/nar/gkn238 18463136
39. The PredictProtein server. Rost B, Yachdav G, Liu J, Nucleic Acids Res 2004 32 321 W326 10.1093/nar/gkh377 15215403 (Pubitemid 39004075)
40. Analysis and prediction of leucine-rich nuclear export signals. la Cour T, Kiemer L, Mølgaard A, Gupta R, Skriver K, Brunak S, Protein Eng Des Sel 2004 17 527 536 10.1093/protein/gzh062 15314210 (Pubitemid 39487532)
41. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP, Syst Biol 2012 61 539 542 10.1093/sysbio/sys029 22357727
42. Studies on morphogenesis and cellular interactions of Rana grylio virus in an infected fish cell line. Zhang QY, Li ZQ, Gui JF, Aquaculture 1999 175 185 197 10.1016/S0044-8486(99)00041-1 (Pubitemid 29245297)
43. Rana catesbeiana virus Z (RCV-Z): a novel pathogenic ranavirus. Majji S, LaPatra S, Long SM, Sample R, Bryan L, Sinning A, Chinchar VG, Dis Aquat Organ 2006 73 1 11 17240747 (Pubitemid 46026145)
44. Genomic sequence of a ranavirus (family Iridoviridae) associated with salamander mortalities in North America. Jancovich JK, Mao J, Chinchar VG, Wyatt C, Case ST, Kumar S, Valente G, Subramanian S, Davidson EW, Collins JP, Jacobs BL, Virology 2003 316 90 103 10.1016/j.virol.2003.08.001 14599794 (Pubitemid 37346312)
45. A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems. Zhang D, Iyer LM, Aravind L, Nucleic Acids Res 2011 39 4532 4552 10.1093/nar/gkr036 21306995
46. Complex formation among murine cytomegalovirus US22 proteins encoded by genes M139, M140, and M141. Karabekian Z, Hanson LK, Slater JS, Krishna NK, Bolin LL, Kerry JA, Campbell AE, J Virol 2005 79 3525 3535 10.1128/JVI.79.6. 3525-3535.2005 15731247 (Pubitemid 40327941)
47. Murine cytomegalovirus capsid assembly is dependent on US22 family gene M140 in infected macrophages. Hanson LK, Slater JS, Cavanaugh VJ, Newcomb WW, Bolin LL, Nelson CN, Fetters LD, Tang Q, Brown JC, Maul GG, Campbell AE, J Virol 2009 83 7449 7456 10.1128/JVI.00325-09 19458005
48. Antagonism of the protein kinase R pathway by the guinea pig cytomegalovirus US22-family gene gp145. Bierle CJ, Schleiss MR, Geballe AP, Virology 2012 433 157 166 10.1016/j.virol.2012.08.005 22917493
49. Characterization of a ranavirus inhibitor of the antiviral protein kinase PKR. Rothenburg S, Chinchar VG, Dever TE, BMC Microbiol 2011 11 56 10.1186/1471-2180-11-56 21418572
50. Immune evasion strategies of ranaviruses and innate immune responses to these emerging pathogens. Grayfer L, De Jesús Andino F, Chen G, Chinchar VG, Robert J, Viruses 2012 4 1075 1092 10.3390/v4071075 22852041
51. Improved knockout methodology reveals that frog virus 3 mutants lacking either the 18K immediate-early gene or the truncated vIF-2α gene are defective for replication and growth in vivo. Chen G, Ward BM, Yu KH, Chinchar VG, Robert J, J Virol 2011 85 11131 11138 10.1128/JVI.05589-11 21865381
52. Nuclear import and export of influenza virus nucleoprotein. Neumann G, Castrucci MR, Kawaoka Y, J Virol 1997 71 9690 9700 9371635 (Pubitemid 27492418)
53. Nuclear import and export pathways. Moroianu J, J Cell Biochem 1999 32-33 Suppl 76 83 (Pubitemid 30041813)
54. Functional exchangeability of the nuclear localization signal (NLS) of capsid protein between PCV1 and PCV2 in vitro: Implications for the role of NLS in viral replication. Shuai JB, Fu LL, Zhang XF, Zhu BL, Li XL, He Y, Fang W, Virol J 2011 8 341 10.1186/1743-422X-8-341 21733152
55. Contributions of two nuclear localization signals of influenza A virus nucleoprotein to viral replication. Ozawa M, Fujii K, Muramoto Y, Yamada S, Yamayoshi S, Takada A, Goto H, Horimoto T, Kawaoka Y, J Virol 2007 81 30 41 10.1128/JVI.01434-06 17050598 (Pubitemid 44975144)
56. Rana grylio virus (RGV) 50L is associated with viral matrix and exhibited two distribution patterns. Lei XY, Ou T, Zhang QY, PLoS One 2012 7 43033 10.1371/journal.pone.0043033 22912781
57. Characterization of virulent West Nile virus Kunjin strain, Australia, 2011. Frost MJ, Zhang J, Edmonds JH, Prow NA, Gu X, Davis R, Hornitzky C, Arzey KE, Finlaison D, Hick P, Read A, Hobson-Peters J, May FJ, Doggett SL, Haniotis J, Russell RC, Hall RA, Khromykh AA, Kirkland PD, Emerg Infect Dis 2011 18 792 800
58. Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Imai M, Watanabe T, Hatta M, Das SC, Ozawa M, Shinya K, Zhong G, Hanson A, Katsura H, Watanabe S, Li C, Kawakami E, Yamada S, Kiso M, Suzuki Y, Maher EA, Neumann G, Kawaoka Y, Nature 2012 486 420 428 22722205