-
1
-
-
0033613219
-
Single Molecule Physics and Chemistry
-
Bai, C.; Wang, C.; Xie, X. S.; Wolynes, P. G. Single Molecule Physics and Chemistry Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 11075-11076
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 11075-11076
-
-
Bai, C.1
Wang, C.2
Xie, X.S.3
Wolynes, P.G.4
-
2
-
-
77952928661
-
Ribosome Structure and Dynamics during Translocation and Termination
-
Dunkle, J. A.; Cate, J. H. D.; Rees, D. C.; Dill, K. A.; Williamson, J. R. Ribosome Structure and Dynamics During Translocation and Termination Annu. Rev. Biophys. 2010, 39, 227-244
-
(2010)
Annu. Rev. Biophys.
, vol.39
, pp. 227-244
-
-
Dunkle, J.A.1
Cate, J.H.D.2
Rees, D.C.3
Dill, K.A.4
Williamson, J.R.5
-
3
-
-
47249110711
-
Translation at the Single-Molecule Level
-
Marshall, R. A.; Aitken, C. E.; Dorywalska, M.; Puglisi, J. D. Translation at the Single-Molecule Level Annu. Rev. Biochem. 2008, 77, 177-203
-
(2008)
Annu. Rev. Biochem.
, vol.77
, pp. 177-203
-
-
Marshall, R.A.1
Aitken, C.E.2
Dorywalska, M.3
Puglisi, J.D.4
-
4
-
-
34347266453
-
High-Resolution, Single-Molecule Measurements of Biomolecular Motion
-
Greenleaf, W. J.; Woodside, M. T.; Block, S. M. High-Resolution, Single-Molecule Measurements of Biomolecular Motion Annu. Rev. Biophys. Biomol. Struct. 2007, 36, 171-190
-
(2007)
Annu. Rev. Biophys. Biomol. Struct.
, vol.36
, pp. 171-190
-
-
Greenleaf, W.J.1
Woodside, M.T.2
Block, S.M.3
-
5
-
-
65549112634
-
Biology, One Molecule at a Time
-
Kapanidis, A. N.; Strick, T. Biology, One Molecule at a Time Trends Biochem. Sci. 2009, 34, 234-243
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 234-243
-
-
Kapanidis, A.N.1
Strick, T.2
-
6
-
-
84861374075
-
Single-Molecule Views of Protein Movement on Single-Stranded DNA
-
Ha, T.; Kozlov, A. G.; Lohman, T. M.; Rees, D. C. Single-Molecule Views of Protein Movement on Single-Stranded DNA Annu. Rev. Biophys. 2012, 41, 295-319
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 295-319
-
-
Ha, T.1
Kozlov, A.G.2
Lohman, T.M.3
Rees, D.C.4
-
7
-
-
33748614065
-
Single Molecule Studies of Enzyme Mechanisms
-
Smiley, R. D.; Hammes, G. G. Single Molecule Studies of Enzyme Mechanisms Chem. Rev. 2006, 106, 3080-3094
-
(2006)
Chem. Rev.
, vol.106
, pp. 3080-3094
-
-
Smiley, R.D.1
Hammes, G.G.2
-
9
-
-
84873527015
-
Single-Molecule Spectroscopy of Protein Folding Dynamics - Expanding Scope and Timescales
-
Schuler, B.; Hofmann, H. Single-Molecule Spectroscopy of Protein Folding Dynamics-Expanding Scope and Timescales Curr. Opin. Struct. Biol. 2013, 23, 36-47
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 36-47
-
-
Schuler, B.1
Hofmann, H.2
-
10
-
-
50649092124
-
Single-Molecule Studies of Protein Folding
-
Borgia, A.; Williams, P. M.; Clarke, J. Single-Molecule Studies of Protein Folding Annu. Rev. Biochem. 2008, 77, 101-125
-
(2008)
Annu. Rev. Biochem.
, vol.77
, pp. 101-125
-
-
Borgia, A.1
Williams, P.M.2
Clarke, J.3
-
12
-
-
77954641162
-
Accurate Single-Molecule FRET Studies Using Multiparameter Fluorescence Detection
-
Sisamakis, E.; Valeri, A.; Kalinin, S.; Rothwell, P. J.; Seidel, C. A. M. Accurate Single-Molecule FRET Studies Using Multiparameter Fluorescence Detection Methods Enzymol. 2010, 475, 455-514
-
(2010)
Methods Enzymol.
, vol.475
, pp. 455-514
-
-
Sisamakis, E.1
Valeri, A.2
Kalinin, S.3
Rothwell, P.J.4
Seidel, C.A.M.5
-
13
-
-
84862076708
-
Quantifying Internal Friction in Unfolded and Intrinsically Disordered Proteins with Single Molecule Spectroscopy
-
Soranno, A.; Buchli, B.; Nettels, D.; Müller-Späth, S.; Cheng, R. R.; Pfeil, S. H.; Hoffmann, A.; Lipman, E. A.; Makarov, D. E.; Schuler, B. Quantifying Internal Friction in Unfolded and Intrinsically Disordered Proteins with Single Molecule Spectroscopy Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 17800-17806
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 17800-17806
-
-
Soranno, A.1
Buchli, B.2
Nettels, D.3
Müller-Späth, S.4
Cheng, R.R.5
Pfeil, S.H.6
Hoffmann, A.7
Lipman, E.A.8
Makarov, D.E.9
Schuler, B.10
-
14
-
-
36249028655
-
Single-Molecule FRET with Diffusion and Conformational Dynamics
-
Gopich, I. V.; Szabo, A. Single-Molecule FRET with Diffusion and Conformational Dynamics J. Phys. Chem. B 2007, 111, 12925-12932
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 12925-12932
-
-
Gopich, I.V.1
Szabo, A.2
-
15
-
-
78751670204
-
Theory of Photon Counting in Single-Molecule Spectroscopy
-
Barkai, E. Brown, F. L. H. Orrit, M. Yang, H. World Scientific Pub. Co. Singapore
-
Gopich, I. V.; Szabo, A. Theory of Photon Counting in Single-Molecule Spectroscopy. In Theory and Evaluation of Single-Molecule Signals; Barkai, E.; Brown, F. L. H.; Orrit, M.; Yang, H., Eds.; World Scientific Pub. Co.: Singapore, 2009; pp 1-64.
-
(2009)
Theory and Evaluation of Single-Molecule Signals
, pp. 1-64
-
-
Gopich, I.V.1
Szabo, A.2
-
16
-
-
69949124663
-
Protein Dynamics from Single-Molecule Fluorescence Intensity Correlation Functions
-
Gopich, I. V.; Nettels, D.; Schuler, B.; Szabo, A. Protein Dynamics from Single-Molecule Fluorescence Intensity Correlation Functions J. Chem. Phys. 2009, 131, 095102-095106
-
(2009)
J. Chem. Phys.
, vol.131
, pp. 095102-095106
-
-
Gopich, I.V.1
Nettels, D.2
Schuler, B.3
Szabo, A.4
-
17
-
-
68149166290
-
Decoding the Pattern of Photon Colors in Single-Molecule FRET
-
Gopich, I. V.; Szabo, A. Decoding the Pattern of Photon Colors in Single-Molecule FRET J. Phys. Chem. B 2009, 113, 10965-10973
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 10965-10973
-
-
Gopich, I.V.1
Szabo, A.2
-
18
-
-
78649596333
-
FRET Efficiency Distributions of Multistate Single Molecules
-
Gopich, I. V.; Szabo, A. FRET Efficiency Distributions of Multistate Single Molecules J. Phys. Chem. B 2010, 114, 15221-15226
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 15221-15226
-
-
Gopich, I.V.1
Szabo, A.2
-
19
-
-
77953415522
-
Detection of Structural Dynamics by FRET: A Photon Distribution and Fluorescence Lifetime Analysis of Systems with Multiple States
-
Kalinin, S.; Valeri, A.; Antonik, M.; Felekyan, S.; Seidel, C. A. Detection of Structural Dynamics by FRET: A Photon Distribution and Fluorescence Lifetime Analysis of Systems with Multiple States J. Phys. Chem. B 2010, 114, 7983-7995
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7983-7995
-
-
Kalinin, S.1
Valeri, A.2
Antonik, M.3
Felekyan, S.4
Seidel, C.A.5
-
20
-
-
84867884299
-
Hidden Complexity in the Isomerization Dynamics of Holliday Junctions
-
Hyeon, C.; Lee, J.; Yoon, J.; Hohng, S.; Thirumalai, D. Hidden Complexity in the Isomerization Dynamics of Holliday Junctions Nat. Chem. 2012, 4, 907-914
-
(2012)
Nat. Chem.
, vol.4
, pp. 907-914
-
-
Hyeon, C.1
Lee, J.2
Yoon, J.3
Hohng, S.4
Thirumalai, D.5
-
21
-
-
84861216803
-
Theory of the Energy Transfer Efficiency and Fluorescence Lifetime Distribution in Single-Molecule FRET
-
Gopich, I. V.; Szabo, A. Theory of the Energy Transfer Efficiency and Fluorescence Lifetime Distribution in Single-Molecule FRET Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 7747-7752
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 7747-7752
-
-
Gopich, I.V.1
Szabo, A.2
-
22
-
-
28444431959
-
Probing Structural Heterogeneities and Fluctuations of Nucleic Acids and Denatured Proteins
-
Laurence, T. A.; Kong, X. X.; Jager, M.; Weiss, S. Probing Structural Heterogeneities and Fluctuations of Nucleic Acids and Denatured Proteins Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 17348-17353
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 17348-17353
-
-
Laurence, T.A.1
Kong, X.X.2
Jager, M.3
Weiss, S.4
-
23
-
-
33846099514
-
Mapping Protein Collapse with Single-Molecule Fluorescence and Kinetic Synchrotron Radiation Circular Dichroism Spectroscopy
-
Hoffmann, A.; Kane, A.; Nettels, D.; Hertzog, D. E.; Baumgärtel, P.; Lengefeld, J.; Reichardt, G.; Horsley, D. A.; Seckler, R.; Bakajin, O.; Schuler, B. Mapping Protein Collapse with Single-Molecule Fluorescence and Kinetic Synchrotron Radiation Circular Dichroism Spectroscopy Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 105-110
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 105-110
-
-
Hoffmann, A.1
Kane, A.2
Nettels, D.3
Hertzog, D.E.4
Baumgärtel, P.5
Lengefeld, J.6
Reichardt, G.7
Horsley, D.A.8
Seckler, R.9
Bakajin, O.10
Schuler, B.11
-
24
-
-
78649562607
-
Extracting Rate Coefficients from Single-Molecule Photon Trajectories and FRET Efficiency Histograms for a Fast-Folding Protein
-
Chung, H. S.; Gopich, I. V.; McHale, K.; Cellmer, T.; Louis, J. M.; Eaton, W. A. Extracting Rate Coefficients from Single-Molecule Photon Trajectories and FRET Efficiency Histograms for a Fast-Folding Protein J. Phys. Chem. A 2011, 115, 3642-3656
-
(2011)
J. Phys. Chem. A
, vol.115
, pp. 3642-3656
-
-
Chung, H.S.1
Gopich, I.V.2
McHale, K.3
Cellmer, T.4
Louis, J.M.5
Eaton, W.A.6
-
25
-
-
78751678107
-
Quantifying Heterogeneity and Conformational Dynamics from Single Molecule FRET of Diffusing Molecules: Recurrence Analysis of Single Particles (RASP)
-
Hoffmann, A.; Nettels, D.; Clark, J.; Borgia, A.; Radford, S. E.; Clarke, J.; Schuler, B. Quantifying Heterogeneity and Conformational Dynamics from Single Molecule FRET of Diffusing Molecules: Recurrence Analysis of Single Particles (RASP) Phys. Chem. Chem. Phys. 2011, 13, 1857-1871
-
(2011)
Phys. Chem. Chem. Phys.
, vol.13
, pp. 1857-1871
-
-
Hoffmann, A.1
Nettels, D.2
Clark, J.3
Borgia, A.4
Radford, S.E.5
Clarke, J.6
Schuler, B.7
-
26
-
-
33847254454
-
Ultrafast Dynamics of Protein Collapse from Single-Molecule Photon Statistics
-
Nettels, D.; Gopich, I. V.; Hoffmann, A.; Schuler, B. Ultrafast Dynamics of Protein Collapse from Single-Molecule Photon Statistics Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 2655-2660
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 2655-2660
-
-
Nettels, D.1
Gopich, I.V.2
Hoffmann, A.3
Schuler, B.4
-
27
-
-
39149087014
-
Protein Folding Studied by Single-Molecule FRET
-
Schuler, B.; Eaton, W. A. Protein Folding Studied by Single-Molecule FRET Curr. Opin. Struct. Biol. 2008, 18, 16-26
-
(2008)
Curr. Opin. Struct. Biol.
, vol.18
, pp. 16-26
-
-
Schuler, B.1
Eaton, W.A.2
-
28
-
-
67650069580
-
Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules
-
Doose, S.; Neuweiler, H.; Sauer, M. Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules ChemPhysChem 2009, 10, 1389-1398
-
(2009)
ChemPhysChem
, vol.10
, pp. 1389-1398
-
-
Doose, S.1
Neuweiler, H.2
Sauer, M.3
-
29
-
-
3042538758
-
Using Photoinduced Charge Transfer Reactions to Study Conformational Dynamics of Biopolymers at the Single-Molecule Level
-
Neuweiler, H.; Sauer, M. Using Photoinduced Charge Transfer Reactions to Study Conformational Dynamics of Biopolymers at the Single-Molecule Level Curr. Pharm. Biotechnol. 2004, 5, 285-298
-
(2004)
Curr. Pharm. Biotechnol.
, vol.5
, pp. 285-298
-
-
Neuweiler, H.1
Sauer, M.2
-
30
-
-
0029964867
-
Diffusion-Limited Contact Formation in Unfolded Cytochrome c: Estimating the Maximum Rate of Protein Folding
-
Hagen, S. J.; Hofrichter, J.; Szabo, A.; Eaton, W. A. Diffusion-Limited Contact Formation in Unfolded Cytochrome c: Estimating the Maximum Rate of Protein Folding Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 11615-11617
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 11615-11617
-
-
Hagen, S.J.1
Hofrichter, J.2
Szabo, A.3
Eaton, W.A.4
-
31
-
-
0033578370
-
The Speed Limit for Protein Folding Measured by Triplet-Triplet Energy Transfer
-
Bieri, O.; Wirz, J.; Hellrung, B.; Schutkowski, M.; Drewello, M.; Kiefhaber, T. The Speed Limit for Protein Folding Measured by Triplet-Triplet Energy Transfer Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 9597-9601
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 9597-9601
-
-
Bieri, O.1
Wirz, J.2
Hellrung, B.3
Schutkowski, M.4
Drewello, M.5
Kiefhaber, T.6
-
32
-
-
0034691198
-
Measuring the Rate of Intramolecular Contact Formation in Polypeptides
-
Lapidus, L. J.; Eaton, W. A.; Hofrichter, J. Measuring the Rate of Intramolecular Contact Formation in Polypeptides Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 7220-7225
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 7220-7225
-
-
Lapidus, L.J.1
Eaton, W.A.2
Hofrichter, J.3
-
33
-
-
79953167530
-
Dynamical Fingerprints for Probing Individual Relaxation Processes in Biomolecular Dynamics with Simulations and Kinetic Experiments
-
Noe, F.; Doose, S.; Daidone, I.; Lollmann, M.; Sauer, M.; Chodera, J. D.; Smith, J. C. Dynamical Fingerprints for Probing Individual Relaxation Processes in Biomolecular Dynamics with Simulations and Kinetic Experiments Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 4822-4827
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 4822-4827
-
-
Noe, F.1
Doose, S.2
Daidone, I.3
Lollmann, M.4
Sauer, M.5
Chodera, J.D.6
Smith, J.C.7
-
34
-
-
33845656521
-
Dynamics of Unfolded Polypeptide Chains in Crowded Environment Studied by Fluorescence Correlation Spectroscopy
-
Neuweiler, H.; Lollmann, M.; Doose, S.; Sauer, M. Dynamics of Unfolded Polypeptide Chains in Crowded Environment Studied by Fluorescence Correlation Spectroscopy J. Mol. Biol. 2007, 365, 856-869
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 856-869
-
-
Neuweiler, H.1
Lollmann, M.2
Doose, S.3
Sauer, M.4
-
35
-
-
78650639374
-
Kinetics of Chain Motions within a Protein-Folding Intermediate
-
Neuweiler, H.; Banachewicz, W.; Fersht, A. R. Kinetics of Chain Motions within a Protein-Folding Intermediate Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 22106-22110
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 22106-22110
-
-
Neuweiler, H.1
Banachewicz, W.2
Fersht, A.R.3
-
36
-
-
73249133356
-
Direct Observation of Ultrafast Folding and Denatured State Dynamics in Single Protein Molecules
-
Neuweiler, H.; Johnson, C. M.; Fersht, A. R. Direct Observation of Ultrafast Folding and Denatured State Dynamics in Single Protein Molecules Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 18569-18574
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 18569-18574
-
-
Neuweiler, H.1
Johnson, C.M.2
Fersht, A.R.3
-
37
-
-
0033437006
-
Analyzing Single Molecule Trajectories on Complex Energy Landscapes Using Replica Correlation Functions
-
Onuchic, J. N.; Wang, J.; Wolynes, P. G. Analyzing Single Molecule Trajectories on Complex Energy Landscapes Using Replica Correlation Functions Chem. Phys. 1999, 247, 175-184
-
(1999)
Chem. Phys.
, vol.247
, pp. 175-184
-
-
Onuchic, J.N.1
Wang, J.2
Wolynes, P.G.3
-
38
-
-
4143071283
-
Single-Molecule Three-Color FRET
-
Hohng, S.; Joo, C.; Ha, T. Single-Molecule Three-Color FRET Biophys. J. 2004, 87, 1328-1337
-
(2004)
Biophys. J.
, vol.87
, pp. 1328-1337
-
-
Hohng, S.1
Joo, C.2
Ha, T.3
-
39
-
-
13444291091
-
Three-Color Single-Molecule Fluorescence Resonance Energy Transfer
-
Clamme, J. P.; Deniz, A. A. Three-Color Single-Molecule Fluorescence Resonance Energy Transfer ChemPhysChem 2005, 6, 74-77
-
(2005)
ChemPhysChem
, vol.6
, pp. 74-77
-
-
Clamme, J.P.1
Deniz, A.A.2
-
40
-
-
33846028172
-
Three-Color Alternating-Laser Excitation of Single Molecules: Monitoring Multiple Interactions and Distances
-
Lee, N. K.; Kapanidis, A. N.; Koh, H. R.; Korlann, Y.; Ho, S. O.; Kim, Y.; Gassman, N.; Kim, S. K.; Weiss, S. Three-Color Alternating-Laser Excitation of Single Molecules: Monitoring Multiple Interactions and Distances Biophys. J. 2007, 92, 303-312
-
(2007)
Biophys. J.
, vol.92
, pp. 303-312
-
-
Lee, N.K.1
Kapanidis, A.N.2
Koh, H.R.3
Korlann, Y.4
Ho, S.O.5
Kim, Y.6
Gassman, N.7
Kim, S.K.8
Weiss, S.9
-
41
-
-
78650272919
-
Single-Molecule Four-Color FRET
-
Lee, J.; Lee, S.; Ragunathan, K.; Joo, C.; Ha, T.; Hohng, S. Single-Molecule Four-Color FRET Angew. Chem., Int. Ed. 2010, 49, 9922-9925
-
(2010)
Angew. Chem., Int. Ed.
, vol.49
, pp. 9922-9925
-
-
Lee, J.1
Lee, S.2
Ragunathan, K.3
Joo, C.4
Ha, T.5
Hohng, S.6
-
42
-
-
1342281633
-
The Protein Folding 'Speed Limit'
-
Kubelka, J.; Hofrichter, J.; Eaton, W. A. The Protein Folding 'Speed Limit' Curr. Opin. Struct. Biol. 2004, 14, 76-88
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 76-88
-
-
Kubelka, J.1
Hofrichter, J.2
Eaton, W.A.3
-
43
-
-
0028947257
-
Funnels, Pathways, and the Energy Landscape of Protein Folding: A Synthesis
-
Bryngelson, J. D.; Onuchic, J. N.; Socci, N. D.; Wolynes, P. G. Funnels, Pathways, and the Energy Landscape of Protein Folding: A Synthesis Proteins 1995, 21, 167-195
-
(1995)
Proteins
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
44
-
-
0030628825
-
Theory of Protein Folding: The Energy Landscape Perspective
-
Onuchic, J. N.; Luthey Schulten, Z.; Wolynes, P. G. Theory of Protein Folding: The Energy Landscape Perspective Annu. Rev. Phys. Chem. 1997, 48, 545-600
-
(1997)
Annu. Rev. Phys. Chem.
, vol.48
, pp. 545-600
-
-
Onuchic, J.N.1
Luthey Schulten, Z.2
Wolynes, P.G.3
-
45
-
-
33747592347
-
The Experimental Survey of Protein-Folding Energy Landscapes
-
Oliveberg, M.; Wolynes, P. G. The Experimental Survey of Protein-Folding Energy Landscapes Q. Rev. Biophys. 2005, 38, 245-288
-
(2005)
Q. Rev. Biophys.
, vol.38
, pp. 245-288
-
-
Oliveberg, M.1
Wolynes, P.G.2
-
46
-
-
48249134448
-
The Protein Folding Problem
-
Dill, K. A.; Ozkan, S. B.; Shell, M. S.; Weikl, T. R. The Protein Folding Problem Annu. Rev. Biophys. 2008, 37, 289-316
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 289-316
-
-
Dill, K.A.1
Ozkan, S.B.2
Shell, M.S.3
Weikl, T.R.4
-
47
-
-
33646931471
-
Protein Folding Thermodynamics and Dynamics: Where Physics, Chemistry, and Biology Meet
-
Shakhnovich, E. Protein Folding Thermodynamics and Dynamics: Where Physics, Chemistry, and Biology Meet Chem. Rev. 2006, 106, 1559-1588
-
(2006)
Chem. Rev.
, vol.106
, pp. 1559-1588
-
-
Shakhnovich, E.1
-
48
-
-
77952931294
-
Theoretical Perspectives on Protein Folding
-
Thirumalai, D.; O'Brien, E. P.; Morrison, G.; Hyeon, C. Theoretical Perspectives on Protein Folding Annu. Rev. Biophys. 2010, 39, 159-183
-
(2010)
Annu. Rev. Biophys.
, vol.39
, pp. 159-183
-
-
Thirumalai, D.1
O'Brien, E.P.2
Morrison, G.3
Hyeon, C.4
-
49
-
-
44949240469
-
Unfolded Protein and Peptide Dynamics Investigated with Single-Molecule FRET and Correlation Spectroscopy from Picoseconds to Seconds
-
Nettels, D.; Hoffmann, A.; Schuler, B. Unfolded Protein and Peptide Dynamics Investigated with Single-Molecule FRET and Correlation Spectroscopy from Picoseconds to Seconds J. Phys. Chem. B 2008, 112, 6137-6146
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 6137-6146
-
-
Nettels, D.1
Hoffmann, A.2
Schuler, B.3
-
51
-
-
33747869510
-
Correlation between Photons in Two Coherent Beams of Light
-
Hanbury Brown, R.; Twiss, R. Q. Correlation between Photons in Two Coherent Beams of Light Nature 1956, 177, 27-29
-
(1956)
Nature
, vol.177
, pp. 27-29
-
-
Hanbury Brown, R.1
Twiss, R.Q.2
-
52
-
-
34547554494
-
Theory of the Statistics of Kinetic Transitions with Application to Single-Molecule Enzyme Catalysis
-
Gopich, I. V.; Szabo, A. Theory of the Statistics of Kinetic Transitions with Application to Single-Molecule Enzyme Catalysis J. Chem. Phys. 2006, 124, 154712-154732
-
(2006)
J. Chem. Phys.
, vol.124
, pp. 154712-154732
-
-
Gopich, I.V.1
Szabo, A.2
-
53
-
-
0142025376
-
Photon Antibunching and Collective Effects in the Fluorescence of Single Bichromophoric Molecules
-
Hübner, C. G.; Zumofen, G.; Renn, A.; Herrmann, A.; Müllen, K.; Basché, T. Photon Antibunching and Collective Effects in the Fluorescence of Single Bichromophoric Molecules Phys. Rev. Lett. 2003, 91, 093903-093906
-
(2003)
Phys. Rev. Lett.
, vol.91
, pp. 093903-093906
-
-
Hübner, C.G.1
Zumofen, G.2
Renn, A.3
Herrmann, A.4
Müllen, K.5
Basché, T.6
-
54
-
-
0003849347
-
-
Eds. Wiley-VCH: Berlin.
-
Single Molecule Detection in Solution, Methods and Applications; Zander, C.; Enderlein, J.; Keller, R. A., Eds.; Wiley-VCH: Berlin, 2002.
-
(2002)
Single Molecule Detection in Solution, Methods and Applications
-
-
Zander, C.1
Enderlein, J.2
Keller, R.A.3
-
55
-
-
0347748069
-
Nonclassical Photon Statistics in Single-Molecule Fluorescence at Room Temperature
-
Fleury, L.; Segura, J. M.; Zumofen, G.; Hecht, B.; Wild, U. P. Nonclassical Photon Statistics in Single-Molecule Fluorescence at Room Temperature Phys. Rev. Lett. 2000, 84, 1148-1151
-
(2000)
Phys. Rev. Lett.
, vol.84
, pp. 1148-1151
-
-
Fleury, L.1
Segura, J.M.2
Zumofen, G.3
Hecht, B.4
Wild, U.P.5
-
56
-
-
0000397420
-
Statistical Accuracy in Fluorescence Correlation Spectroscopy
-
Koppel, D. E. Statistical Accuracy in Fluorescence Correlation Spectroscopy Phys. Rev. A 1974, 10, 1938-1945
-
(1974)
Phys. Rev. A
, vol.10
, pp. 1938-1945
-
-
Koppel, D.E.1
-
57
-
-
0003667151
-
-
VCH Publishers, Inc. New York.
-
Van Der Meer, B. W.; Coker, G., III; Chen, S. Y. S. Resonance Energy Transfer: Theory and Data; VCH Publishers, Inc.: New York, 1994.
-
(1994)
Resonance Energy Transfer: Theory and Data
-
-
Van Der Meer, B.W.1
Coker III, G.2
Chen, S.Y.S.3
-
58
-
-
39049187155
-
Application of Single Molecule Förster Resonance Energy Transfer to Protein Folding
-
Schuler, B. Application of Single Molecule Förster Resonance Energy Transfer to Protein Folding Methods Mol. Biol. 2007, 350, 115-138
-
(2007)
Methods Mol. Biol.
, vol.350
, pp. 115-138
-
-
Schuler, B.1
-
59
-
-
77952872928
-
Mechanisms of Quenching of Alexa Fluorophores by Natural Amino Acids
-
Chen, H. M.; Ahsan, S. S.; Santiago-Berrios, M. B.; Abruna, H. D.; Webb, W. W. Mechanisms of Quenching of Alexa Fluorophores by Natural Amino Acids J. Am. Chem. Soc. 2010, 132, 7244-7245
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 7244-7245
-
-
Chen, H.M.1
Ahsan, S.S.2
Santiago-Berrios, M.B.3
Abruna, H.D.4
Webb, W.W.5
-
60
-
-
27844487609
-
A Close Look at Fluorescence Quenching of Organic Dyes by Tryptophan
-
Doose, S.; Neuweiler, H.; Sauer, M. A Close Look at Fluorescence Quenching of Organic Dyes by Tryptophan ChemPhysChem 2005, 6, 2277-2285
-
(2005)
ChemPhysChem
, vol.6
, pp. 2277-2285
-
-
Doose, S.1
Neuweiler, H.2
Sauer, M.3
-
62
-
-
0344012145
-
Fluorescence Quenching of Dyes by Tryptophan: Interactions at Atomic Detail from Combination of Experiment and Computer Simulation
-
Vaiana, A. C.; Neuweiler, H.; Schulz, A.; Wolfrum, J.; Sauer, M.; Smith, J. C. Fluorescence Quenching of Dyes by Tryptophan: Interactions at Atomic Detail from Combination of Experiment and Computer Simulation J. Am. Chem. Soc. 2003, 125, 14564-14572
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 14564-14572
-
-
Vaiana, A.C.1
Neuweiler, H.2
Schulz, A.3
Wolfrum, J.4
Sauer, M.5
Smith, J.C.6
-
63
-
-
79952731301
-
Unfolding Dynamics of Cytochrome c Revealed by Single-Molecule and Ensemble-Averaged Spectroscopy
-
Choi, J.; Kim, S.; Tachikawa, T.; Fujitsuka, M.; Majima, T. Unfolding Dynamics of Cytochrome c Revealed by Single-Molecule and Ensemble-Averaged Spectroscopy Phys. Chem. Chem. Phys. 2011, 13, 5651-5658
-
(2011)
Phys. Chem. Chem. Phys.
, vol.13
, pp. 5651-5658
-
-
Choi, J.1
Kim, S.2
Tachikawa, T.3
Fujitsuka, M.4
Majima, T.5
-
64
-
-
14544283620
-
Polyproline and the "spectroscopic Ruler" Revisited with Single Molecule Fluorescence
-
Schuler, B.; Lipman, E. A.; Steinbach, P. J.; Kumke, M.; Eaton, W. A. Polyproline and the "Spectroscopic Ruler" Revisited with Single Molecule Fluorescence Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 2754-2759
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 2754-2759
-
-
Schuler, B.1
Lipman, E.A.2
Steinbach, P.J.3
Kumke, M.4
Eaton, W.A.5
-
65
-
-
37649015345
-
Effect of Flexibility and Cis Residues in Single Molecule FRET Studies of Polyproline
-
Best, R.; Merchant, K.; Gopich, I. V.; Schuler, B.; Bax, A.; Eaton, W. A. Effect of Flexibility and Cis Residues in Single Molecule FRET Studies of Polyproline Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 18964-18969
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 18964-18969
-
-
Best, R.1
Merchant, K.2
Gopich, I.V.3
Schuler, B.4
Bax, A.5
Eaton, W.A.6
-
66
-
-
36849083388
-
Probing Polyproline Structure and Dynamics by Photoinduced Electron Transfer Provides Evidence for Deviations from a Regular Polyproline Type II Helix
-
Doose, S.; Neuweiler, H.; Barsch, H.; Sauer, M. Probing Polyproline Structure and Dynamics by Photoinduced Electron Transfer Provides Evidence for Deviations from a Regular Polyproline Type II Helix Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 17400-17405
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 17400-17405
-
-
Doose, S.1
Neuweiler, H.2
Barsch, H.3
Sauer, M.4
-
67
-
-
14944346760
-
Effect of Proline and Glycine Residues on Dynamics and Barriers of Loop Formation in Polypeptide Chains
-
Krieger, F.; Moglich, A.; Kiefhaber, T. Effect of Proline and Glycine Residues on Dynamics and Barriers of Loop Formation in Polypeptide Chains J. Am. Chem. Soc. 2005, 127, 3346-3352
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 3346-3352
-
-
Krieger, F.1
Moglich, A.2
Kiefhaber, T.3
-
68
-
-
0043237588
-
Dynamics of Unfolded Polypeptide Chains as Model for the Earliest Steps in Protein Folding
-
Krieger, F.; Fierz, B.; Bieri, O.; Drewello, M.; Kiefhaber, T. Dynamics of Unfolded Polypeptide Chains as Model for the Earliest Steps in Protein Folding J. Mol. Biol. 2003, 332, 265-274
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 265-274
-
-
Krieger, F.1
Fierz, B.2
Bieri, O.3
Drewello, M.4
Kiefhaber, T.5
-
69
-
-
0037038514
-
Effects of Chain Stiffness on the Dynamics of Loop Formation in Polypeptides. Appendix: Testing a 1-Dimensional Diffusion Model for Peptide Dynamics
-
Lapidus, L. J.; Steinbach, P. J.; Eaton, W. A.; Szabo, A.; Hofrichter, J. Effects of Chain Stiffness on the Dynamics of Loop Formation in Polypeptides. Appendix: Testing a 1-Dimensional Diffusion Model for Peptide Dynamics J. Phys. Chem. B 2002, 106, 11628-11640
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 11628-11640
-
-
Lapidus, L.J.1
Steinbach, P.J.2
Eaton, W.A.3
Szabo, A.4
Hofrichter, J.5
-
70
-
-
0029010695
-
Kinetics of Protein-Folding - Nucleation Mechanism, Time Scales, and Pathways
-
Guo, Z. Y.; Thirumalai, D. Kinetics of Protein-Folding-Nucleation Mechanism, Time Scales, and Pathways Biopolymers 1995, 36, 83-102
-
(1995)
Biopolymers
, vol.36
, pp. 83-102
-
-
Guo, Z.Y.1
Thirumalai, D.2
-
71
-
-
0028941444
-
Theoretical Predictions of Folding Pathways by Using the Proximity Rule, with Applications to Bovine Pancreatic Trypsin-Inhibitor
-
Camacho, C. J.; Thirumalai, D. Theoretical Predictions of Folding Pathways by Using the Proximity Rule, with Applications to Bovine Pancreatic Trypsin-Inhibitor Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 1277-1281
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 1277-1281
-
-
Camacho, C.J.1
Thirumalai, D.2
-
72
-
-
0000114379
-
Time Scales for the Formation of the Most Probable Tertiary Contacts in Proteins with Applications to Cytochrome c
-
Thirumalai, D. Time Scales for the Formation of the Most Probable Tertiary Contacts in Proteins with Applications to Cytochrome c J. Phys. Chem. B 1999, 103, 608-610
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 608-610
-
-
Thirumalai, D.1
-
73
-
-
33846438226
-
End-to-End vs Interior Loop Formation Kinetics in Unfolded Polypeptide Chains
-
Fierz, B.; Kiefhaber, T. End-to-End vs Interior Loop Formation Kinetics in Unfolded Polypeptide Chains J. Am. Chem. Soc. 2007, 129, 672-679
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 672-679
-
-
Fierz, B.1
Kiefhaber, T.2
-
74
-
-
84857251457
-
Combining MFD and PIE for Accurate Single-Pair Förster Resonance Energy Transfer Measurements
-
Kudryavtsev, V.; Sikor, M.; Kalinin, S.; Mokranjac, D.; Seidel, C. A. M.; Lamb, D. C. Combining MFD and PIE for Accurate Single-Pair Förster Resonance Energy Transfer Measurements ChemPhysChem 2012, 13, 1060-1078
-
(2012)
ChemPhysChem
, vol.13
, pp. 1060-1078
-
-
Kudryavtsev, V.1
Sikor, M.2
Kalinin, S.3
Mokranjac, D.4
Seidel, C.A.M.5
Lamb, D.C.6
-
75
-
-
84870835154
-
Localizing Internal Friction Along the Reaction Coordinate of Protein Folding by Combining Ensemble and Single Molecule Fluorescence Spectroscopy
-
Borgia, A.; Wensley, B. G.; Soranno, A.; Nettels, D.; Borgia, M.; Hoffmann, A.; Pfeil, S. H.; Lipman, E. A.; Clarke, J.; Schuler, B. Localizing Internal Friction Along the Reaction Coordinate of Protein Folding by Combining Ensemble and Single Molecule Fluorescence Spectroscopy Nat. Commun. 2012, 2, 1195
-
(2012)
Nat. Commun.
, vol.2
, pp. 1195
-
-
Borgia, A.1
Wensley, B.G.2
Soranno, A.3
Nettels, D.4
Borgia, M.5
Hoffmann, A.6
Pfeil, S.H.7
Lipman, E.A.8
Clarke, J.9
Schuler, B.10
|