Genetics: A New Landscape for Medical Geography

Annals of the Association of American Geographers

Volumn 103, Issue 6, 2013, Pages 1452-1467

  Carrel, Margaret ^a   Emch, Michael ^b  

^a UNIVERSITY OF IOWA   (United States)

^b University of North Carolina at Chapel Hill   (United States)

Author keywords

disease ecology; landscape genetics; medical geography; pathogenic evolution

Indexed keywords

DISEASE; DISEASE TREATMENT; LANDSCAPE; MEDICAL GEOGRAPHY; NATURE-SOCIETY RELATIONS; PATHOGEN; PUBLIC HEALTH;

EID: 84886402813     PISSN: 00045608     EISSN: 14678306     Source Type: Journal    
DOI: 10.1080/00045608.2013.784102     Document Type: Article

References (99)

1. Agnew, J. A., Livingstone, D. N. and Rogers, A. 1996. Human geography: An essential anthology, Oxford, UK: Wiley-Blackwell.
2. Alford, J. R., Funk, C. L. and Hibbing, J. R. 2005. Are political orientations genetically transmitted. American Political Science Review, 99: 153 - 67.
3. Archie, E. A., Luikart, G. and Ezenwa, V. O. 2009. Infecting epidemiology with genetics: A new frontier in disease ecology. Trends in Ecology & Evolution, 24: 21 - 30.
4. Audy, J. R. 1958. Medical ecology in relation to geography. British Journal, 12: 102 - 10.
5. Balkenhol, N., Gugerli, F., Cushman, S. A., Waits, L. P., Coulon, A., Arntzen, J. W., Holderegger, R. and Wagner, H. H. 2009. Identifying future research needs in landscape genetics: Where to from here?. Landscape Ecology, 24: 455 - 63.
6. Barrett, F. A. 2002. The role of French-language contributors to the development of medical geography (1782-1933). Social Science & Medicine, 55: 155 - 65.
7. Bearman, P. 2008. Exploring genetics and social structure. American Journal of Sociology, 114 (SUPPL.)
8. Biek, R. and Real, L. A. 2010. The landscape genetics of infectious disease emergence and spread. Molecular Ecology, 19: 3515
9. Carrel, M. A., Emch, M., Jobe, R. T., Moody, A. and Wan, X. F. 2010. Spatiotemporal structure of molecular evolution of H5N1 highly pathogenic avian influenza viruses in Vietnam. PloS One, 5: e8631
10. Carrel, M. A., Emch, M., Nguyen, T., Jobe, R. T. and Wan, X. F. 2012. Population-environment drivers of H5N1 avian influenza molecular change in Vietnam. Health & Place, 18 (5): 1122 - 31.
11. Carrel, M., Wan, X. F., Nguyen, T. and Emch, M. 2011. Genetic variation of highly pathogenic H5N1 avian influenza viruses in Vietnam shows both species-specific and spatiotemporal associations. Avian Diseases, 55: 659 - 66.
12. Carrel, M., Wan, X. F., Nguyen, T. and Emch, M. 2012. Highly pathogenic H5N1 avian influenza viruses exhibit few barriers to gene flow in Vietnam. EcoHealth, 9 (1): 60 - 69.
13. Cavalli-Sforza, L. L. and Feldman, M. W. 2003. The application of molecular genetic approaches to the study of human evolution. Nature Genetics, 33: 266 - 75.
14. Center for International Earth Science Information Network (CIESIN). 2010. Gridded population of the world, version 3 (GPWv3), Palisades, NY: CIESIN.
15. Cliff, A. and Haggett, P. 2004. Time, travel and infection. British Medical Bulletin, 69: 87 - 99.
16. Cliff, A. D., Haggett, P. and Graham, R. 1983. Reconstruction of diffusion processes at different geographical scales: The 1904 measles epidemic in northwest Iceland. Journal of Historical Geography, 9: 29 - 46.
17. Cliff, A., Haggett, P., Ord, J. and Versey, G. 1981. Spatial diffusion: An historical geography of epidemics in an island community, Cambridge, UK: Cambridge University Press.
18. Cosgrove, D. E. 1983. Towards a radical cultural geography: Problems of theory. Antipode, 15: 1 - 11.
19. Cosgrove, D. E. 1985. Prospect, perspective and the evolution of the landscape idea. Transactions of the Institute of British Geographers, 10: 45 - 62.
20. Criscione, C. D., Anderson, J. D., Sudimack, D., Subedi, J., Upadhayay, R. P., Jha, B., Williams, K. D., Williams-Blangero, S. and Anderson, T. J. C. 2010. Landscape genetics reveals focal transmission of a human macroparasite. PLoS Neglected Tropical Diseases, 4: 308 - 32.
21. Duan, L., Bahl, J., Smith, G. J., Wang, J., Vijaykrishna, D., Zhang, L. J. Zhang, J. X. 2008. The development and genetic diversity of H5N1 influenza virus in China, 1996-2006. Virology, 380: 243 - 54.
22. Dubos, R. J. 1965. Man adapting, New Haven, CT: Yale University Press.
23. Dubos, R. J. 1987. Mirage of health: Utopias, progress and biological change, New Brunswick, NJ: Rutgers University Press.
24. Dung Nguyen, T., Vinh Nguyen, T., Vijaykrishna, D., Webster, R. G., Guan, Y., Malik Peiris, J. S. and Smith, G. J. 2008. Multiple sublineages of influenza A virus (H5N1), Vietnam, 2005-2007. Emerging Infectious Diseases, 14: 632 - 36.
25. Forster, P. and Matsumura, S. 2005. Did early humans go north or south?. Science, 308: 965
26. Fowler, J. H., Baker, L. A. and Dawes, C. T. 2008. Genetic variation in political participation. American Political Science Review, 102: 233 - 48.
27. Gilbert, M., Chaitaweesub, P., Parakamawongsa, T., Premashthira, S., Tiensin, T., Kalpravidh, W., Wagner, H. and Slingenbergh, J. 2006. Free-grazing ducks and highly pathogenic avian influenza, Thailand. Emerging Infectious Diseases, 12: 227 - 34.
28. Gilbert, M., Xiao, X., Pfeiffer, D. U., Epprecht, M., Boles, S., Czarnecki, C. Chaitaweesub, P. 2008. Mapping H5N1 highly pathogenic avian influenza risk in Southeast Asia. Proceedings of the National Academy of Sciences of the United States of America, 105: 4769 - 74.
29. Guillot, G., Estoup, A., Mortier, F. and Cosson, J. F. 2005. A spatial statistical model for landscape genetics. Genetics, 170: 1261 - 80.
30. Hansen, M., DeFries, R., Townshend, J. R. G. and Sohlberg, R. 1998. UMD global land cover classification, 1 kilometer, 1.0, College Park: Department of Geography, University of Maryland, College Park.
31. Hartshorne, R. 1939. The nature of geography: A critical survey of current thought in the light of the past. Annals of the Association of American Geographers, 29: 173 - 412.
32. Henning, K. A., Henning, J., Morton, J., Long, N. T., Ha, N. T. and Meers, J. 2009. Farm-and flock-level risk factors associated with highly pathogenic avian influenza outbreaks on small holder duck and chicken farms in the Mekong Delta of Viet Nam. Preventive Veterinary Medicine, 91: 179 - 88.
33. Holderegger, R., Kamm, U. and Gugerli, F. 2006. Adaptive vs. neutral genetic diversity: Implications for landscape genetics. Landscape Ecology, 21: 797 - 807.
34. Holderegger, R. and Wagner, H. H. 2006. A brief guide to landscape genetics. Landscape Ecology, 21: 793 - 96.
35. Hunter, J. M. 1974. The challenge of medical geography. The geography of health & disease, J. M. Hunter, 1-31. Chapel Hill, NC: Department of Geography, University of North Carolina
36. Janies, D., Hill, A. W., Guralnick, R., Habib, F., Waltari, E. and Wheeler, W. C. 2007. Genomic analysis and geographic visualization of the spread of avian influenza (H5N1). Systematic Biology, 56: 321 - 29.
37. Kwan, M. P. 2012. The uncertain geographic context problem. Annals of the Association of American Geographers, 102: 958 - 68.
38. Le Menach, A, Tatem, A. J., Cohen, J. M., Hay, S. I., Randell, H., Patil, A. P. and Smith, D. L. 2011. Travel risk, malaria importation and malaria transmission in Zanzibar. Scientific Reports, 1: 93
39. Li, J. Z., Absher, D. M., Tang, H., Southwick, A. M., Casto, A. M., Ramachandran, S., Cann, H. M., Barsh, G. S., Feldman, M. and Cavalli-Sforza, L. L. 2008. Worldwide human relationships inferred from genome-wide patterns of variation. Science, 319: 1100
40. Liang, L., Xu, B., Chen, Y., Liu, Y., Cao, W., Fang, L., Feng, L., Goodchild, M. F., Gong, P. and Li, W. 2010. Combining spatial-temporal and phylogenetic analysis approaches for improved understanding on global H5N1 transmission. PloS One, 5: e13575
41. Linard, C., Gilbert, M. and Tatem, A. J. 2010. Assessing the use of global land cover data for guiding large area population distribution modelling. GeoJourna1, 76: 525 - 38.
42. Manel, S., Schwartz, M. K., Luikart, G. and Taberlet, P. 2003. Landscape genetics: Combining landscape ecology and population genetics. Trends in Ecology & Evolution, 18: 189 - 97.
43. Martin, V., Pfeiffer, D. U., Zhou, X., Xiao, X., Prosser, D. J., Guo, F. and Gilbert, M. 2011. Spatial distribution and risk factors of highly pathogenic avian influenza (HPAI) H5N1 in China. PLoS Pathogens, 7: e1001308
44. May, J. M. 1950. Medical geography: Its methods and objectives. Geographical Review, 40: 9 - 41.
45. May, J. M. 1958. The ecology of human disease: Studies in medical geography, New York: MD Publications.
46. Mayer, J. D. 2000. Geography, ecology and emerging infectious diseases. Social Science & Medicine, 50: 937 - 52.
47. Mayer, J. D. and Meade, M. S. 1994. A reformed medical geography reconsidered. The Professional Geographer, 46: 103 - 06.
48. Meade, M. S. 1977. Medical geography as human ecology: The dimension of population movement. The Geographical Review, 67: 379 - 93.
49. Meade, M. S. and Emch, M. 2010. Medical geography, New York: Guilford.
50. Mehta, S. R., Delport, W., Brouwer, K. C., Espitia, S., Patterson, T., Pond, S. K., Strathdee, S. A. and Smith, D. M. 2010. The relatedness of HIV epidemics in the United States-Mexico border region. AIDS Research and Human Retroviruses, 26: 1273 - 77.
51. Mock, K. E., Bentz, B., O'Neill, E., Chong, J., Orwin, J. and Pfrender, M. 2007. Landscape-scale genetic variation in a forest outbreak species, the mountain pine beetle (Dendroctonus ponderosae). Molecular Ecology, 16: 553 - 68.
52. Naveh, Z. 2007. " Biocybernetic perspectives of landscape ecology and management ". In Foundation papers in landscape ecology, Edited by: Weins, J. A., Moss, M. R., Turner, M. G. and Mladenoff, D. J. 274 - 85. New York: Columbia University Press.
53. Noulas, A., Scellato, S., Lambiotte, R., Pontil, M. and Mascolo, C. 2012. A tale of many cities: Universal patterns in human urban mobility. PloS One, 7: e37027
54. Patterson, K. D. and Pyle, G. F. 1983. The diffusion of influenza in sub-Saharan Africa during the 1918-1919 pandemic. Social Science & Medicine, 17: 1299 - 1307.
55. Paul, M., Tavornpanich, S., Abrial, D., Gasqui, P., Charras-Garrido, M., Thanapongtharm, W., Xiao, X., Gilbert, M., Roger, F. and Ducrot, C. 2010. Anthropogenic factors and the risk of highly pathogenic avian influenza H5N1: Prospects from a spatial-based model. Veterinary Research, 41 (3): 28
56. Pavlovsky, E. N. 1966. Natural nidality of transmissible diseases with special reference to the landscape epidemiology of zooanthroponoses, Champaign: University of Illinois Press.
57. Pearce, R. J., Pota, H., Evehe, M. S. B., Bâ, E. H., Mombo-Ngoma, G., Malisa, A. L., Ord, R., Inojosa, W., Matondo, A. and Diallo, D. A. 2009. Multiple origins and regional dispersal of resistant dhps in African Plasmodium falciparum malaria. PLoS Medicine, 6: e1000055
58. Peterson, A. T. and Williams, R. A. J. 2008. Risk mapping of highly pathogenic avian influenza distribution and spread. Ecology & Society, 13: 15
59. Pfeiffer, D. U., Minh, P. Q., Martin, V., Epprecht, M. and Otte, M. J. 2007. An analysis of the spatial and temporal patterns of highly pathogenic avian influenza occurrence in Vietnam using national surveillance data. The Veterinary Journal, 174: 302 - 09.
60. Pfeiffer, J., Pantin-Jackwood, M., To, T. L., Nguyen, T. and Suarez, D. L. 2009. Phylogenetic and biological characterization of highly pathogenic H5N1 avian influenza viruses (Vietnam 2005) in chickens and ducks. Virus Research, 142: 108 - 20.
61. Piertney, S. B., Maccoll, A. D. C., Bacon, P. J. and Dallas, J. F. 1998. Local genetic structure in red grouse (Lagopus lagopus scoticus): Evidence from microsatellite DNA markers. Molecular Ecology, 7: 1645 - 54.
62. Prothero, R. M. 1961. Population movements and problems of malaria eradication in Africa. Bulletin of the World Health Organization, 24: 405
63. Prothero, R. M. 1963. Population mobility and trypanosomiasis in Africa. Bulletin of the World Health Organization, 28: 615
64. Pyle, G. F. 1969. The diffusion of cholera in the United States in the nineteenth century. Geographical Analysis, 1: 59 - 75.
65. R Development Core Team. 2011. R: A language and environment for statistical computing, Vienna, Austria: R Development Core Team.
66. Rebaudet, S., Bogreau, H., Silaï, R., Lepère, J. F., Bertaux, L., Pradines, B., Delmont, J., Gautret, P., Parola, P. and Rogier, C. 2010. Genetic structure of Plasmodium falciparum and elimination of malaria, Comoros Archipelago. Emerging Infectious Diseases, 16: 1686 - 94.
67. Riddle, B. R., Dawson, M. N., Hadly, E. A., Hafner, D. J., Hickerson, M. J., Mantooth, S. J. and Yoder, A. D. 2008. The role of molecular genetics in sculpting the future of integrative biogeography. Progress in Physical Geography, 32: 173
68. Rogers, A. R. 1995. Genetic evidence for a Pleistocene population explosion. Evolution, 49: 608 - 15.
69. Roundy, R. W. 1978. A model for combining human behavior and disease ecology to assess disease hazard in a community: Rural Ethiopia as a model. Social Science & Medicine Part D: Medical Geography, 12: 121 - 30.
70. Sauer, C. O. 1925. The morphology of landscape. University of California Publications in Geography, 2 (2): 19 - 53.
71. Schnittker, J. 2008. Happiness and success: Genes, families, and the psychological effects of socioeconomic position and social support. American Journal of Sociology, 114: S233 - 59.
72. Scott, C. A., Robbins, P. F. and Comrie, A. C. 2012. The mutual conditioning of humans and pathogens: Implications for integrative geographical scholarship. Annals of the Association of American Geographers, 102: 977 - 85.
73. Shaw, D. J. B. and Oldfield, J. D. 2007. Landscape science: A Russian geographical tradition. Annals of the Association of American Geographers, 97: 111 - 26.
74. Sloan, C. D., Duell, E. J., Shi, X., Irwin, R., Andrew, A. S., Williams, S. M. and Moore, J. H. 2009. Ecogeographic genetic epidemiology. Genetic Epidemiology, 33: 281 - 89.
75. Small, M., Walker, D. M. and Tse, C. K. 2007. Scale-free distribution of avian influenza outbreaks. Physical Review Letters, 99: 188702
76. Smith, G. J., Naipospos, T. S., Nguyen, T. D., de Jong, M. D., Vijaykrishna, D., Usman, T. B. Hassan, S. S. 2006. Evolution and adaptation of H5N1 influenza virus in avian and human hosts in Indonesia and Vietnam. Virology, 350: 258 - 68.
77. Sork, V. L., Nason, J., Campbell, D. R. and Fernandez, J. F. 1999. Landscape approaches to historical and contemporary gene flow in plants. Trends in Ecology & Evolution, 14: 219 - 24.
78. Sorre, M. 1933. Complexes pathogènes et géographie médicale [Pathogenic complexes and medical geography]. Annales de Géographie, 42: 1 - 18.
79. Steinauer, M. L., Blouin, M. S. and Criscione, C. D. 2010. Applying evolutionary genetics to schistosome epidemiology. Infection, Genetics and Evolution, 10: 433 - 43.
80. Stock, R. F. 1976. Cholera in Africa: Diffusion of the disease 1970-1975 with particular emphasis on West Africa, African Environment Special Report 3. London: International African Institute.
81. Storfer, A., Murphy, M. A., Evans, J. S., Goldberg, C. S., Robinson, S., Spear, S. F., Dezzani, R., Delmelle, E., Vierling, L. and Waits, L. P. 2007. Putting the "landscape" in landscape genetics. Heredity, 98: 128 - 42.
82. Tatem, A. J., Noor, A. M., Von Hagen, C., Di Gregorio, A. and Hay, S. I. 2007. High resolution population maps for low income nations: Combining land cover and census in East Africa. PLoS One, 2: e1298
83. Tiensin, T., Ahmed, S., Rojanasthien, S., Songserm, T., Ratanakorn, P., Chaichoun, K. Kalpravidh, W. 2009. Ecologic risk factor investigation of clusters of avian influenza A (H5N1) virus infection in Thailand. Journal of Infectious Diseases, 199: 1735 - 43.
84. Tiensin, T., Nielen, M., Songserm, T., Kalpravidh, W., Chaitaweesub, P., Amonsin, A. Chotiprasatintara, S. 2007. Geographic and temporal distribution of highly pathogenic avian influenza A virus (H5N1) in Thailand, 2004-2005: An overview. Avian Diseases, 51: 182 - 88.
85. Turner, M. G. 2005. Landscape ecology: What is the state of the science?. Annual Review of Ecology, Evolution, and Systematics, 36: 319 - 44.
86. Urban, D. L., O'Neill, R. V. and Shugart, H. H. Jr. 1987. Landscape ecology: A hierarchical perspective can help scientists understand spatial patterns. Bioscience, 37: 119 - 27.
87. Vazquez-Prokopec, G. M., Stoddard, S. T., Paz-Soldan, V., Morrison, A. C., Elder, J. P., Kochel, T. J., Scott, T. W. and Kitron, U. 2009. Usefulness of commercially available GPS data-loggers for tracking human movement and exposure to dengue virus. International Journal of Health Geographics, 8: 68
88. Vidal de La Blache, P. 1903. Tableau de la géographie de la France [Picture of the geography of France], Paris: Hachette.
89. Vidal de La Blache, P. 1922. Principes de géographie humaine [Principles of human geography], Paris: Colin.
90. Wallace, R. G. and Fitch, W. M. 2008. Influenza A H5N1 immigration is filtered out at some international borders. PLoS One, 3: e1697
91. Wallace, R. G., Hodac, H., Lathrop, R. H. and Fitch, W. M. 2007. A statistical phylogeography of influenza A H5N1. Proceedings of the National Academy of Sciences of the United States of America, 104: 4473 - 78.
92. Wan, X. F., Nguyen, T., Davis, C. T., Smith, C. B., Zhao, Z. M., Carrel, M. Inui, K. 2008. Evolution of highly pathogenic H5N1 avian influenza viruses in Vietnam between 2001 and 2007. PLoS One, 3: e3462
93. Wang, J., Vijaykrishna, D., Duan, L., Bahl, J., Zhang, J. X., Webster, R. G., Peiris, J. S., Chen, H., Smith, G. J. and Guan, Y. 2008. Identification of the progenitors of Indonesian and Vietnamese avian influenza A (H5N1) viruses from southern China. Journal of Virology, 82: 3405 - 14.
94. Wheeler, D. C. and Waller, L. A. 2008. Mountains, valleys, and rivers: The transmission of raccoon rabies over a heterogeneous landscape. Journal of Agricultural, Biological, and Environmental Statistics, 13: 388 - 406.
95. Wiens, J. A., Moss, M. R., Turner, M. G. and Mladenoff, D. J. 2007. Foundation papers in landscape ecology, New York: Columbia University Press.
96. Williams, R. A. J., Fasina, F. O. and Peterson, A. T. 2008. Predictable ecology and geography of avian influenza (H5N1) transmission in Nigeria and West Africa. Transactions of the Royal Society of Tropical Medicine and Hygiene, 102: 471 - 79.
97. Wright, S. 1965. The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution, 19: 395 - 420.
98. Zelinsky, W. 1971. The hypothesis of the mobility transition. Geographical Review, 61: 219 - 49.
99. Zhao, Z. M., Shortridge, K. F., Garcia, M., Guan, Y. and Wan, X. F. 2008. Genotypic diversity of H5N1 highly pathogenic avian influenza viruses. The Journal of General Virology, 89: 2182 - 93.